Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0004072

Physical Location & Seq

Genomic Coordinates Forward (+)

10250929 .. 10251522

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1133900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCAATTCAACATGAATGACGTGTGCCTGGTTGACGAGTTTGATAATTCCTTTGTAGGATTCCACATGCAATGTGAGAGCGTCTTTGGCAAGAAGAGCATTGGAAAAGTCCGGGTGCCATTCGTGGACTTGATCGATGAACAGTGCAATGAGGCAGTCCGGTTTGTGAGCTACCAGGTTCGGAGTAGCCTTGGTAAGCCTAATGGGGTCCTGAATTTTTCTTACAAGGTGATCAAGGACAACAACAACAGTAGAGTTGGAATCTATGATTCCCAGGAATCCGATTCCTCGTCTGAATTAACCACAGCCAGTGTTTCTCCTGATCCGGCTGTTAATACAGTCCAATCTCTTTACCCCGCCTTGGACGTGGAACTCCTGTCCCGGGATATAAACATATCCTATCCTTTGCTATCCGGTGTTCGGGCTCCTTTGCCGAGAATTTCAGTTCCTTCTCCAAAGTTCAATTGCCATTGGAGACCAAACCCCTATGATATCACATGGCTGCCATCTCTGCTGCTGTTTTCTCTGCCAGCAACTGGGCCTAAAGGTGTGGAGGGTTGGGAACACGACACCAAGTGTTATAATACAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

198

Amino Acids

22.0

Weight (kDa)

5.16

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20050
fragaria_vesca	FvH4_4g22200 FvH4_4g22210
malus_domestica	MD13G1133800.v1.1 MD13G1133900.v1.1 MD16G1144400.v1.1 MD16G1144500.v1.1
prunus_persica	Prupe.1G211700_v2.0.a1 Prupe.1G211800_v2.0.a1 Prupe.1G211800_v2.0.a1
pyrus_communis	pycom13g11660 pycom16g11370 pycom16g11380
rosa_chinensis	RchiOBHm_Chr4g0428431 RchiOBHm_Chr4g0428441
rosa_laevigata	RLG00000007151
rosa_multiflora	Rmu_sc0006844.1_g000002 Rmu_sc0006844.1_g000003 Rmu_sc0010468.1_g000001 Rmu_sc0010468.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370100 Rroxscaffold_5G00370110
rosa_rugosa	Rorug04G0225300 Rorug04G0225300
rosa_samantha	Rh4AG282700 Rh4AG282800 Rh4BG288400 Rh4BG288500 Rh4CG304100 Rh4DG285500 Rh4DG285600
rosa_wichuraiana	Rw4G024540 Rw4G024550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	582
AccB1I	GGYRCC	1 cut(s)	115
AccB7I	CCANNNNNTGG	1 cut(s)	536
AciI	CCGC	1 cut(s)	357
AclWI	GGATC	1 cut(s)	317
AcsI	RAATTY	2 cut(s)	214, 438
AdeI	CACNNNGTG	1 cut(s)	576
AfiI	CCNNNNNNNGG	4 cut(s)	361, 382, 420, 536
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	2 cut(s)	10, 463
AjiI	CACGTC	2 cut(s)	22, 367
AjnI	CCWGG	3 cut(s)	27, 174, 273
AluBI	AGCT	1 cut(s)	171
AluI	AGCT	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	469
AlwI	GGATC	1 cut(s)	317
AlwNI	CAGNNNCTG	1 cut(s)	536
Ama87I	CYCGRG	1 cut(s)	381
AoxI	GGCC	1 cut(s)	539
ApeKI	GCWGC	2 cut(s)	502, 514
ApoI	RAATTY	2 cut(s)	214, 438
AspS9I	GGNCC	2 cut(s)	208, 539
AsuC2I	CCSGG	3 cut(s)	113, 382, 383
AsuHPI	GGTGA	1 cut(s)	241
AvaI	CYCGRG	1 cut(s)	381
AvaII	GGWCC	1 cut(s)	208
BanI	GGYRCC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	427
BbvI	GCAGC	2 cut(s)	489, 501
BccI	CCATC	1 cut(s)	514
BciT130I	CCWGG	3 cut(s)	29, 176, 275
BclI	TGATCA	1 cut(s)	231
BcnI	CCSGG	3 cut(s)	113, 382, 383
BcoDI	GTCTC	1 cut(s)	469
BisI	GCNGC	2 cut(s)	503, 515
BlsI	GCNGC	2 cut(s)	504, 516
Bme1390I	CCNGG	6 cut(s)	29, 113, 176, 275, 382, 383
Bme18I	GGWCC	1 cut(s)	208
BmeT110I	CYCGRG	1 cut(s)	381
BmgBI	CACGTC	2 cut(s)	22, 367
BmgT120I	GGNCC	2 cut(s)	208, 539
BmiI	GGNNCC	3 cut(s)	117, 209, 426
BmrFI	CCNGG	6 cut(s)	29, 113, 176, 275, 382, 383
BmrI	ACTGGG	1 cut(s)	546
BmuI	ACTGGG	1 cut(s)	546
BpuMI	CCSGG	3 cut(s)	113, 382, 383
Bsa29I	ATCGAT	1 cut(s)	135
BsaI	GGTCTC	1 cut(s)	469
BsaJI	CCNNGG	4 cut(s)	190, 273, 360, 381
BsaWI	WCCGGW	2 cut(s)	159, 413
Bsc4I	CCNNNNNNNGG	4 cut(s)	361, 382, 420, 536
Bse1I	ACTGG	2 cut(s)	309, 541
Bse3DI	GCAATG	2 cut(s)	77, 154
BseBI	CCWGG	3 cut(s)	29, 176, 275
BseCI	ATCGAT	1 cut(s)	135
BseDI	CCNNGG	4 cut(s)	190, 273, 360, 381
BseLI	CCNNNNNNNGG	4 cut(s)	361, 382, 420, 536
BseMI	GCAATG	2 cut(s)	77, 154
BseNI	ACTGG	2 cut(s)	309, 541
BseXI	GCAGC	2 cut(s)	489, 501
BshFI	GGCC	1 cut(s)	541
BshNI	GGYRCC	1 cut(s)	115
BshVI	ATCGAT	1 cut(s)	135
BsiHKCI	CYCGRG	1 cut(s)	381
BsiSI	CCGG	5 cut(s)	112, 160, 326, 382, 414
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	4 cut(s)	361, 382, 420, 536
BsmAI	GTCTC	1 cut(s)	469
BsmFI	GGGAC	1 cut(s)	364
BsnI	GGCC	1 cut(s)	541
Bso31I	GGTCTC	1 cut(s)	469
BsoBI	CYCGRG	1 cut(s)	381
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp143I	GATC	3 cut(s)	132, 231, 322
BspACI	CCGC	1 cut(s)	357
BspANI	GGCC	1 cut(s)	541
BspDI	ATCGAT	1 cut(s)	135
BspLI	GGNNCC	3 cut(s)	117, 209, 426
BspPI	GGATC	1 cut(s)	317
BspQI	GCTCTTC	1 cut(s)	89
BspT107I	GGYRCC	1 cut(s)	115
BspTNI	GGTCTC	1 cut(s)	469
BsrDI	GCAATG	2 cut(s)	77, 154
BsrI	ACTGG	2 cut(s)	309, 541
BssECI	CCNNGG	4 cut(s)	190, 273, 360, 381
BssMI	GATC	3 cut(s)	132, 231, 322
BssT1I	CCWWGG	2 cut(s)	190, 360
Bst2UI	CCWGG	3 cut(s)	29, 176, 275
Bst4CI	ACNGT	3 cut(s)	144, 251, 340
Bst6I	CTCTTC	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	531
BstKTI	GATC	3 cut(s)	135, 234, 325
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	3 cut(s)	132, 231, 322
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 96, 511
BstNI	CCWGG	3 cut(s)	29, 176, 275
BstNSI	RCATGY	1 cut(s)	70
BstSCI	CCNGG	6 cut(s)	27, 111, 174, 273, 380, 381
BstV1I	GCAGC	2 cut(s)	489, 501
Bsu15I	ATCGAT	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	541
BsuTUI	ATCGAT	1 cut(s)	135
BtrI	CACGTC	2 cut(s)	22, 367
BtsIMutI	CAGTG	2 cut(s)	149, 316
Cac8I	GCNNGC	1 cut(s)	531
CaiI	CAGNNNCTG	1 cut(s)	536
Cfr13I	GGNCC	2 cut(s)	208, 539
Cfr9I	CCCGGG	1 cut(s)	381
ClaI	ATCGAT	1 cut(s)	135
CseI	GACGC	1 cut(s)	70
CsiI	ACCWGGT	1 cut(s)	174
CviAII	CATG	3 cut(s)	13, 67, 498
CviJI	RGCY	8 cut(s)	171, 189, 199, 308, 329, 425, 502, 541
CviKI_1	RGCY	8 cut(s)	171, 189, 199, 308, 329, 425, 502, 541
DpnI	GATC	3 cut(s)	134, 233, 324
DpnII	GATC	3 cut(s)	132, 231, 322
DraIII	CACNNNGTG	1 cut(s)	576
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco130I	CCWWGG	2 cut(s)	190, 360
Eco24I	GRGCYC	1 cut(s)	427
Eco31I	GGTCTC	1 cut(s)	469
Eco32I	GATATC	1 cut(s)	493
Eco47I	GGWCC	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	381
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRII	CCWGG	3 cut(s)	27, 174, 273
EcoRV	GATATC	1 cut(s)	493
EcoT14I	CCWWGG	2 cut(s)	190, 360
EcoT38I	GRGCYC	1 cut(s)	427
ErhI	CCWWGG	2 cut(s)	190, 360
FaeI	CATG	3 cut(s)	16, 70, 501
FaiI	YATR	8 cut(s)	14, 68, 267, 389, 395, 489, 499, 582
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	3 cut(s)	12, 66, 497
FauI	CCCGC	1 cut(s)	364
FbaI	TGATCA	1 cut(s)	231
Fnu4HI	GCNGC	2 cut(s)	503, 515
FriOI	GRGCYC	1 cut(s)	427
Fsp4HI	GCNGC	2 cut(s)	503, 515
GluI	GCNGC	2 cut(s)	503, 515
HaeIII	GGCC	1 cut(s)	541
HapII	CCGG	5 cut(s)	112, 160, 326, 382, 414
HgaI	GACGC	1 cut(s)	70
Hin1II	CATG	3 cut(s)	16, 70, 501
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	5 cut(s)	60, 261, 269, 278, 284
HpaII	CCGG	5 cut(s)	112, 160, 326, 382, 414
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	2 cut(s)	34, 127
Hpy188I	TCNGA	3 cut(s)	183, 283, 295
Hpy188III	TCNNGA	2 cut(s)	211, 320
Hpy8I	GTNNAC	2 cut(s)	34, 127
HpyAV	CCTTC	1 cut(s)	459
HpyCH4III	ACNGT	3 cut(s)	144, 251, 340
HpyCH4IV	ACGT	2 cut(s)	21, 366
HpyCH4V	TGCA	3 cut(s)	4, 70, 147
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 96, 511
HpySE526I	ACGT	2 cut(s)	21, 366
Hsp92II	CATG	3 cut(s)	16, 70, 501
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	3 cut(s)	132, 231, 322
LguI	GCTCTTC	1 cut(s)	89
LmnI	GCTCC	1 cut(s)	430
Lsp1109I	GCAGC	2 cut(s)	489, 501
MabI	ACCWGGT	1 cut(s)	174
MaeII	ACGT	2 cut(s)	21, 366
MalI	GATC	3 cut(s)	134, 233, 324
MboI	GATC	3 cut(s)	132, 231, 322
MboII	GAAGA	1 cut(s)	106
MfeI	CAATTG	1 cut(s)	463
MhlI	GDGCHC	1 cut(s)	427
MluCI	AATT	6 cut(s)	5, 46, 214, 296, 438, 463
MmeI	TCCRAC	1 cut(s)	238
MnlI	CCTC	3 cut(s)	145, 298, 547
MseI	TTAA	2 cut(s)	299, 333
MspI	CCGG	5 cut(s)	112, 160, 326, 382, 414
MspR9I	CCNGG	6 cut(s)	29, 113, 176, 275, 382, 383
MunI	CAATTG	1 cut(s)	463
MvaI	CCWGG	3 cut(s)	29, 176, 275
MwoI	GCNNNNNNNGC	3 cut(s)	87, 96, 511
NciI	CCSGG	3 cut(s)	113, 382, 383
NdeII	GATC	3 cut(s)	132, 231, 322
NlaIII	CATG	3 cut(s)	16, 70, 501
NlaIV	GGNNCC	3 cut(s)	117, 209, 426
NmeAIII	GCCGAG	1 cut(s)	459
NspI	RCATGY	1 cut(s)	70
PciSI	GCTCTTC	1 cut(s)	89
PfeI	GAWTC	5 cut(s)	60, 261, 269, 278, 284
PflMI	CCANNNNNTGG	1 cut(s)	536
PkrI	GCNGC	2 cut(s)	504, 516
PpuMI	RGGWCCY	1 cut(s)	208
PsiI	TTATAA	1 cut(s)	582
Psp5II	RGGWCCY	1 cut(s)	208
Psp6I	CCWGG	3 cut(s)	27, 174, 273
PspGI	CCWGG	3 cut(s)	27, 174, 273
PspN4I	GGNNCC	3 cut(s)	117, 209, 426
PspPI	GGNCC	2 cut(s)	208, 539
PspPPI	RGGWCCY	1 cut(s)	208
PstNI	CAGNNNCTG	1 cut(s)	536
SapI	GCTCTTC	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	299, 333
SatI	GCNGC	2 cut(s)	503, 515
Sau3AI	GATC	3 cut(s)	132, 231, 322
Sau96I	GGNCC	2 cut(s)	208, 539
ScrFI	CCNGG	6 cut(s)	29, 113, 176, 275, 382, 383
SduI	GDGCHC	1 cut(s)	427
SetI	ASST	6 cut(s)	24, 173, 180, 231, 369, 550
SexAI	ACCWGGT	1 cut(s)	174
SinI	GGWCC	1 cut(s)	208
SmaI	CCCGGG	1 cut(s)	383
Sse9I	AATT	6 cut(s)	5, 46, 214, 296, 438, 463
SsiI	CCGC	1 cut(s)	357
StyD4I	CCNGG	6 cut(s)	27, 111, 174, 273, 380, 381
StyI	CCWWGG	2 cut(s)	190, 360
TaaI	ACNGT	3 cut(s)	144, 251, 340
TaiI	ACGT	2 cut(s)	24, 369
TaqI	TCGA	1 cut(s)	135
TasI	AATT	6 cut(s)	5, 46, 214, 296, 438, 463
TfiI	GAWTC	5 cut(s)	60, 261, 269, 278, 284
Tru1I	TTAA	2 cut(s)	299, 333
Tru9I	TTAA	2 cut(s)	299, 333
TscAI	CASTG	2 cut(s)	149, 316
TseI	GCWGC	2 cut(s)	502, 514
TspDTI	ATGAA	2 cut(s)	29, 153
TspMI	CCCGGG	1 cut(s)	381
TspRI	CASTG	2 cut(s)	149, 316
Van91I	CCANNNNNTGG	1 cut(s)	536
VpaK11BI	GGWCC	1 cut(s)	208
XapI	RAATTY	2 cut(s)	214, 438
XceI	RCATGY	1 cut(s)	70
XmaI	CCCGGG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.