Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004072

Physical Location & Seq

Genomic Coordinates Reverse (-)

51800487 .. 51802134

Gene Structure 1648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00370110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTGTTGGTGGGCTTTCACGGGCCTCACGCATTTGATACTTGAAGGTTATTTTGCATTCTCGCCCGAGTTTTACAAGGATAAGACTGCTTGTTACCTGGCTGAAGTCTGGAAAGAATACAGCAAAGGTGATTCAAGATACGCATTTAGGGATGCAGGAGTTGTTGCTGTTGAAGGATTGACTGCAGTTATAGAGGGACCGGCTTGCCTTCTTGCAGTGTATGCAATAGCTAAAGGCAAGTCATATAGCTATGTGCTCCAGCTTGCCATTTCTTTGGGGCAGCTCTACGGAACTGCTGTATATTTCATTACAGCCTTCTTGGAAGGTGACCACTTTGCTGCAAGTCCACTCTACTACTATGAATACTACATTGCTGCTAATGCTTCATGGGTCGTTATACCCACACTCATTTCAATCCGGAGTTGGAAGAGGATTTGTGCAGCAGTACAGGCTCAAGGCCAGAAGAAGAACAAAACTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000247 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0016020 GO:0016125 GO:0016126 GO:0016853 GO:0016860 GO:0016863 GO:0044238 GO:0044464 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko00195 ko01100 ko01110 map00100 map00195 map01100 map01110

Pfam Domains

Protein Families

EBP

Protein Analysis

160

Amino Acids

17.95

Weight (kDa)

8.58

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EBP	PF05241	33 - 141	8e-24	EXPERA (EXPanded EBP superfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20050
fragaria_vesca	FvH4_4g22200 FvH4_4g22210
malus_domestica	MD13G1133800.v1.1 MD13G1133900.v1.1 MD16G1144400.v1.1 MD16G1144500.v1.1
prunus_persica	Prupe.1G211700_v2.0.a1 Prupe.1G211800_v2.0.a1 Prupe.1G211800_v2.0.a1
pyrus_communis	pycom13g11660 pycom16g11370 pycom16g11380
rosa_chinensis	RchiOBHm_Chr4g0428431 RchiOBHm_Chr4g0428441
rosa_laevigata	RLG00000007151
rosa_multiflora	Rmu_sc0006844.1_g000002 Rmu_sc0006844.1_g000003 Rmu_sc0010468.1_g000001 Rmu_sc0010468.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370100 Rroxscaffold_5G00370110
rosa_rugosa	Rorug04G0225300 Rorug04G0225300
rosa_samantha	Rh4AG282700 Rh4AG282800 Rh4BG288400 Rh4BG288500 Rh4CG304100 Rh4DG285500 Rh4DG285600
rosa_wichuraiana	Rw4G024540 Rw4G024550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	417
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	1 cut(s)	447
AgsI	TTSAA	4 cut(s)	44, 135, 173, 414
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	4 cut(s)	230, 249, 262, 283
AluI	AGCT	4 cut(s)	230, 249, 262, 283
Alw21I	GWGCWC	1 cut(s)	258
Ama87I	CYCGRG	1 cut(s)	65
Aor13HI	TCCGGA	1 cut(s)	417
AoxI	GGCC	2 cut(s)	22, 457
ApeKI	GCWGC	4 cut(s)	280, 338, 374, 440
AspS9I	GGNCC	2 cut(s)	22, 197
AsuHPI	GGTGA	2 cut(s)	140, 338
AvaI	CYCGRG	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	4 cut(s)	292, 325, 361, 452
BciT130I	CCWGG	1 cut(s)	98
BfmI	CTRYAG	1 cut(s)	183
BisI	GCNGC	4 cut(s)	281, 339, 375, 441
BlsI	GCNGC	4 cut(s)	282, 340, 376, 442
Bme1390I	CCNGG	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	197
BmeT110I	CYCGRG	1 cut(s)	65
BmgT120I	GGNCC	2 cut(s)	22, 197
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	98
BmsI	GCATC	1 cut(s)	142
BpmI	CTGGAG	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	438
BsaWI	WCCGGW	1 cut(s)	417
Bse118I	RCCGGY	1 cut(s)	199
Bse3DI	GCAATG	1 cut(s)	369
BseAI	TCCGGA	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	98
BseGI	GGATG	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	369
BseXI	GCAGC	4 cut(s)	292, 325, 361, 452
BsgI	GTGCAG	1 cut(s)	459
BshFI	GGCC	2 cut(s)	24, 459
BsiHKAI	GWGCWC	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	2 cut(s)	200, 418
BslFI	GGGAC	1 cut(s)	210
BsmFI	GGGAC	1 cut(s)	210
BsmI	GAATGC	1 cut(s)	56
BsnI	GGCC	2 cut(s)	24, 459
BsoBI	CYCGRG	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp13I	TCCGGA	1 cut(s)	417
BspANI	GGCC	2 cut(s)	24, 459
BspEI	TCCGGA	1 cut(s)	417
BspLI	GGNNCC	1 cut(s)	198
BspMAI	CTGCAG	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	369
BsrFI	RCCGGY	1 cut(s)	199
BssAI	RCCGGY	1 cut(s)	199
Bst2UI	CCWGG	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	422
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstC8I	GCNNGC	2 cut(s)	205, 264
BstEII	GGTNACC	1 cut(s)	326
BstF5I	GGATG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 380, 449
BstNI	CCWGG	1 cut(s)	98
BstPI	GGTNACC	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	96
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	4 cut(s)	292, 325, 361, 452
BstXI	CCANNNNNNTGG	1 cut(s)	274
BsuRI	GGCC	2 cut(s)	24, 459
BtsCI	GGATG	1 cut(s)	157
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	2 cut(s)	205, 264
Cfr10I	RCCGGY	1 cut(s)	199
Cfr13I	GGNCC	2 cut(s)	22, 197
Csp6I	GTAC	1 cut(s)	446
CviAII	CATG	1 cut(s)	387
CviQI	GTAC	1 cut(s)	446
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
Eco47I	GGWCC	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	65
Eco91I	GGTNACC	1 cut(s)	326
EcoO65I	GGTNACC	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	96
FaeI	CATG	1 cut(s)	390
FaiI	YATR	9 cut(s)	191, 222, 244, 246, 252, 301, 360, 388, 398
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	1 cut(s)	386
Fnu4HI	GCNGC	4 cut(s)	281, 339, 375, 441
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	4 cut(s)	281, 339, 375, 441
GluI	GCNGC	4 cut(s)	281, 339, 375, 441
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	2 cut(s)	24, 459
HapII	CCGG	2 cut(s)	200, 418
Hin1II	CATG	1 cut(s)	390
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	2 cut(s)	200, 418
HphI	GGTGA	2 cut(s)	140, 338
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188III	TCNNGA	3 cut(s)	109, 135, 418
Hpy8I	GTNNAC	1 cut(s)	347
HpyAV	CCTTC	5 cut(s)	38, 167, 218, 317, 325
HpyCH4V	TGCA	7 cut(s)	56, 155, 185, 215, 224, 341, 440
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 380, 449
Hsp92II	CATG	1 cut(s)	390
Kpn2I	TCCGGA	1 cut(s)	417
LmnI	GCTCC	1 cut(s)	261
LpnPI	CCDG	9 cut(s)	83, 94, 110, 141, 213, 272, 431, 434, 473
Lsp1109I	GCAGC	4 cut(s)	292, 325, 361, 452
LweI	GCATC	1 cut(s)	142
MaeIII	GTNAC	2 cut(s)	92, 326
MboII	GAAGA	3 cut(s)	439, 475, 478
MhlI	GDGCHC	1 cut(s)	258
MmeI	TCCRAC	1 cut(s)	404
MnlI	CCTC	3 cut(s)	35, 187, 423
MroI	TCCGGA	1 cut(s)	417
MspI	CCGG	2 cut(s)	200, 418
MspR9I	CCNGG	1 cut(s)	98
Mva1269I	GAATGC	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	3 cut(s)	221, 380, 449
NlaIII	CATG	1 cut(s)	390
NlaIV	GGNNCC	1 cut(s)	198
NmuCI	GTSAC	1 cut(s)	326
PctI	GAATGC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	4 cut(s)	282, 340, 376, 442
Psp6I	CCWGG	1 cut(s)	96
PspEI	GGTNACC	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	2 cut(s)	22, 197
PstI	CTGCAG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	447
RsaNI	GTAC	1 cut(s)	446
SatI	GCNGC	4 cut(s)	281, 339, 375, 441
Sau96I	GGNCC	2 cut(s)	22, 197
ScrFI	CCNGG	1 cut(s)	98
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	8 cut(s)	49, 99, 130, 232, 251, 264, 285, 328
SfaNI	GCATC	1 cut(s)	142
SfcI	CTRYAG	1 cut(s)	183
SinI	GGWCC	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	453
SmoI	CTYRAG	1 cut(s)	453
StyD4I	CCNGG	1 cut(s)	96
TatI	WGTACW	1 cut(s)	445
TfiI	GAWTC	1 cut(s)	131
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	4 cut(s)	280, 338, 374, 440
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	3 cut(s)	295, 375, 375
TspGWI	ACGGA	1 cut(s)	303
TspRI	CASTG	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.