Rh4AG282900

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0016826
Physical Location & Seq
Reverse (-)
59769868 .. 59770363
496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG282900.1

Sequence Viewer

Length: 336 bp
ATGGACACAGGGGATTTAACTATTCAAGTTCTCAACCTTTCTCCAAGGGTGACCCTTAAAGACTTGATTACCTTCTTCTCTTATTGTGGAACTGTTCACAATGTCCAGCTCTTGAGAGATAAAGAGCAATCGCCCTATGCTTTAGTGACTTTTGGGCAGCCTTATGCTTTCCAAACTGCTCTTCTCCTTGATGATGCTGTGTTTGGAGGGAAACCCATTTGCGTATTACCTGCATGTGTTATAAAGATTCCTATTGAATCAGATGACGACACTGATGAGTCTCAGGTTCTCTTTTATCATTCTTGTAACCTGAATTTAGGACTTTACTTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

111

Amino Acids

12.39

Weight (kDa)

4.51

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 10 - 73 2.1e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016826)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g22220
malus_domestica MD16G1144300.v1.1
prunus_persica Prupe.1G211900_v2.0.a1
pyrus_communis pycom16g11360
rosa_chinensis RchiOBHm_Chr4g0428451
rosa_laevigata RLG00000007150
rosa_multiflora Rmu_sc0006844.1_g000006
rosa_roxburghii Rroxscaffold_5G00370130
rosa_rugosa Rorug04G0225300
rosa_samantha Rh4AG282900 Rh4BG288600 Rh4CG304200 Rh4DG285700
rosa_wichuraiana Rw4G024560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
Acc36I ACCTGC 1 cut(s) 238
AcsI RAATTY 1 cut(s) 313
AgsI TTSAA 3 cut(s) 26, 257, 331
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 285
ApeKI GCWGC 1 cut(s) 157
ApoI RAATTY 1 cut(s) 313
AsuHPI GGTGA 1 cut(s) 61
BbvI GCAGC 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 285
BfuAI ACCTGC 1 cut(s) 238
BisI GCNGC 1 cut(s) 158
BlsI GCNGC 1 cut(s) 159
BmsI GCATC 1 cut(s) 184
BpuEI CTTGAG 1 cut(s) 133
BsaJI CCNNGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 296
BseXI GCAGC 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 285
BspCNI CTCAG 1 cut(s) 295
BspMI ACCTGC 1 cut(s) 238
BspQI GCTCTTC 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 44
BssT1I CCWWGG 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 282
BstEII GGTNACC 1 cut(s) 49
BstMAI GTCTC 1 cut(s) 285
BstNSI RCATGY 1 cut(s) 237
BstPI GGTNACC 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 270
BveI ACCTGC 1 cut(s) 238
CviAII CATG 1 cut(s) 234
CviJI RGCY 2 cut(s) 109, 160
CviKI_1 RGCY 2 cut(s) 109, 160
DdeI CTNAG 1 cut(s) 282
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 44
Eco91I GGTNACC 1 cut(s) 49
EcoO65I GGTNACC 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 44
FaeI CATG 1 cut(s) 237
FaiI YATR 4 cut(s) 138, 165, 235, 242
FatI CATG 1 cut(s) 233
Fnu4HI GCNGC 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 158
GluI GCNGC 1 cut(s) 158
Hin1II CATG 1 cut(s) 237
HinfI GANTC 3 cut(s) 247, 257, 278
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 1 cut(s) 112
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 282
Hsp92II CATG 1 cut(s) 237
LguI GCTCTTC 1 cut(s) 186
LpnPI CCDG 4 cut(s) 119, 243, 269, 323
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 184
MaeIII GTNAC 3 cut(s) 49, 145, 305
MboII GAAGA 2 cut(s) 67, 173
MluCI AATT 1 cut(s) 313
MlyI GAGTC 1 cut(s) 287
MnlI CCTC 1 cut(s) 200
MseI TTAA 2 cut(s) 17, 57
NlaIII CATG 1 cut(s) 237
NmuCI GTSAC 2 cut(s) 49, 145
NspI RCATGY 1 cut(s) 237
PciSI GCTCTTC 1 cut(s) 186
PfeI GAWTC 2 cut(s) 247, 257
PkrI GCNGC 1 cut(s) 159
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
PsiI TTATAA 1 cut(s) 242
PspEI GGTNACC 1 cut(s) 49
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 2 cut(s) 17, 57
SatI GCNGC 1 cut(s) 158
SchI GAGTC 1 cut(s) 287
SetI ASST 6 cut(s) 39, 74, 111, 232, 288, 312
SfaNI GCATC 1 cut(s) 184
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
Sse9I AATT 1 cut(s) 313
StyI CCWWGG 1 cut(s) 44
TaaI ACNGT 1 cut(s) 94
TasI AATT 1 cut(s) 313
TfiI GAWTC 2 cut(s) 247, 257
Tru1I TTAA 2 cut(s) 17, 57
Tru9I TTAA 2 cut(s) 17, 57
TscAI CASTG 1 cut(s) 277
TseFI GTSAC 2 cut(s) 49, 145
TseI GCWGC 1 cut(s) 157
Tsp45I GTSAC 2 cut(s) 49, 145
TspRI CASTG 1 cut(s) 277
XapI RAATTY 1 cut(s) 313
XceI RCATGY 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.