pycom16g11360

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0016826
Physical Location & Seq
Forward (+)
7920393 .. 7921027
635 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g11360.1

Sequence Viewer

Length: 393 bp
ATGGCCACAGAAGATTTAACTGTTCAGGTTCTCAACCTTCCTCCAAGGGTGACTCTTGCAGAATTGAATACCTTCTTCTCTTACTGTGGAACTGTTCAACAAATCCAGCTCGCGAGGGATAATGACCAATTACCATATGCTTTGGTGACTTTTGTGCAGCCTTATGCTTTTCAAACTGCCCTTCTCCTTGATGATGCTACCTTTGGAGGCCAACAAATTGGCATATTACCTGCATATGATATTAGAATTCCTATAGTTTCAGATGAAGACACAAAAGATGAAGACACAAACGATGAAGACACAAAAGATAAAGATGAAGACACAAAAGATGATCACACCCGGGTTACTCATAAAGTTGGTACTTTGATGTGTTTTTGTAGCTGTTTTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

131

Amino Acids

14.57

Weight (kDa)

4.13

Isoelectric Point (pI)

31.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 10 - 73 1e-09 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016826)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g22220
malus_domestica MD16G1144300.v1.1
prunus_persica Prupe.1G211900_v2.0.a1
pyrus_communis pycom16g11360
rosa_chinensis RchiOBHm_Chr4g0428451
rosa_laevigata RLG00000007150
rosa_multiflora Rmu_sc0006844.1_g000006
rosa_roxburghii Rroxscaffold_5G00370130
rosa_rugosa Rorug04G0225300
rosa_samantha Rh4AG282900 Rh4BG288600 Rh4CG304200 Rh4DG285700
rosa_wichuraiana Rw4G024560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 238
AccII CGCG 1 cut(s) 113
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 246
AfaI GTAC 1 cut(s) 361
AgsI TTSAA 3 cut(s) 67, 98, 173
AluBI AGCT 2 cut(s) 109, 381
AluI AGCT 2 cut(s) 109, 381
Ama87I CYCGRG 1 cut(s) 339
AoxI GGCC 2 cut(s) 3, 208
ApeKI GCWGC 1 cut(s) 157
ApoI RAATTY 1 cut(s) 246
Asp700I GAANNNNTTC 1 cut(s) 71
AsuC2I CCSGG 2 cut(s) 340, 341
AsuHPI GGTGA 2 cut(s) 61, 157
AvaI CYCGRG 1 cut(s) 339
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 4 cut(s) 273, 288, 303, 324
BbvI GCAGC 1 cut(s) 169
BclI TGATCA 1 cut(s) 331
BcnI CCSGG 2 cut(s) 340, 341
BfmI CTRYAG 1 cut(s) 252
BfuAI ACCTGC 1 cut(s) 238
BisI GCNGC 1 cut(s) 158
BlsI GCNGC 1 cut(s) 159
Bme1390I CCNGG 2 cut(s) 340, 341
BmeT110I CYCGRG 1 cut(s) 339
BmrFI CCNGG 2 cut(s) 340, 341
BmsI GCATC 1 cut(s) 184
BpiI GAAGAC 4 cut(s) 273, 288, 303, 324
BpuMI CCSGG 2 cut(s) 340, 341
BsaJI CCNNGG 2 cut(s) 44, 339
BseDI CCNNGG 2 cut(s) 44, 339
BseXI GCAGC 1 cut(s) 169
BsgI GTGCAG 1 cut(s) 176
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 2 cut(s) 5, 210
BsiHKCI CYCGRG 1 cut(s) 339
BsiSI CCGG 1 cut(s) 340
BsnI GGCC 2 cut(s) 5, 210
BsoBI CYCGRG 1 cut(s) 339
Bsp143I GATC 1 cut(s) 331
Bsp68I TCGCGA 1 cut(s) 113
BspANI GGCC 2 cut(s) 5, 210
BspFNI CGCG 1 cut(s) 113
BspMI ACCTGC 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 44, 339
BssMI GATC 1 cut(s) 331
BssT1I CCWWGG 1 cut(s) 44
Bst4CI ACNGT 3 cut(s) 22, 86, 94
BstC8I GCNNGC 1 cut(s) 111
BstFNI CGCG 1 cut(s) 113
BstKTI GATC 1 cut(s) 334
BstMBI GATC 1 cut(s) 331
BstSCI CCNGG 2 cut(s) 338, 339
BstSFI CTRYAG 1 cut(s) 252
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 4 cut(s) 273, 288, 303, 324
BstXI CCANNNNNNTGG 1 cut(s) 218
BsuRI GGCC 2 cut(s) 5, 210
BtuMI TCGCGA 1 cut(s) 113
BveI ACCTGC 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 111
Cfr9I CCCGGG 1 cut(s) 339
Csp6I GTAC 1 cut(s) 360
CviJI RGCY 5 cut(s) 5, 109, 160, 210, 381
CviKI_1 RGCY 5 cut(s) 5, 109, 160, 210, 381
CviQI GTAC 1 cut(s) 360
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 44
Eco88I CYCGRG 1 cut(s) 339
EcoRI GAATTC 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 44
FaiI YATR 8 cut(s) 136, 138, 165, 224, 235, 237, 254, 351
FauNDI CATATG 2 cut(s) 136, 235
FbaI TGATCA 1 cut(s) 331
Fnu4HI GCNGC 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 158
GluI GCNGC 1 cut(s) 158
HaeIII GGCC 2 cut(s) 5, 210
HapII CCGG 1 cut(s) 340
HinfI GANTC 1 cut(s) 52
HpaII CCGG 1 cut(s) 340
HphI GGTGA 2 cut(s) 61, 157
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 1 cut(s) 112
HpyAV CCTTC 3 cut(s) 47, 82, 191
HpyCH4III ACNGT 3 cut(s) 22, 86, 94
HpyCH4V TGCA 3 cut(s) 59, 157, 233
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 1 cut(s) 331
LpnPI CCDG 4 cut(s) 11, 119, 243, 353
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 184
MaeIII GTNAC 3 cut(s) 49, 145, 343
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MboII GAAGA 6 cut(s) 23, 67, 278, 293, 308, 329
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 62, 128, 216, 246
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 46
MnlI CCTC 3 cut(s) 51, 108, 200
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 71
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 17
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 340
MspR9I CCNGG 2 cut(s) 340, 341
MvnI CGCG 1 cut(s) 113
NciI CCSGG 2 cut(s) 340, 341
NdeI CATATG 2 cut(s) 136, 235
NdeII GATC 1 cut(s) 331
NmuCI GTSAC 2 cut(s) 49, 145
NruI TCGCGA 1 cut(s) 113
PdmI GAANNNNTTC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 159
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
RruI TCGCGA 1 cut(s) 113
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 1 cut(s) 158
Sau3AI GATC 1 cut(s) 331
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 2 cut(s) 340, 341
SetI ASST 7 cut(s) 30, 39, 74, 111, 203, 232, 383
SfaNI GCATC 1 cut(s) 184
SfcI CTRYAG 1 cut(s) 252
SmaI CCCGGG 1 cut(s) 341
Sse9I AATT 4 cut(s) 62, 128, 216, 246
StyD4I CCNGG 2 cut(s) 338, 339
StyI CCWWGG 1 cut(s) 44
TaaI ACNGT 3 cut(s) 22, 86, 94
TasI AATT 4 cut(s) 62, 128, 216, 246
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TseFI GTSAC 2 cut(s) 49, 145
TseI GCWGC 1 cut(s) 157
Tsp45I GTSAC 2 cut(s) 49, 145
TspDTI ATGAA 4 cut(s) 279, 294, 309, 330
TspMI CCCGGG 1 cut(s) 339
XapI RAATTY 1 cut(s) 246
XmaI CCCGGG 1 cut(s) 339
XmnI GAANNNNTTC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.