RLG00000007150

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0016826
Physical Location & Seq
Forward (+)
14053339 .. 14054172
834 bp
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UTR
Exon/CDS
Intron
RLM00000007150

Sequence Viewer

Length: 447 bp
ATGGACACAGGGGATTTAACTATTCAAGTTCTCAACCTTGCTCCAAGGGTGACCCTCAAAGACTTGATTGCCTTCTTCTCTTATTGTGGAACTGTTCACAATGTCCAGCTCTTGAGAGATAAAGAGCAATCGCCCTATGCTTTAGTGACTTTTGGGCAGCCTTATGCTTTCCAAACTGCTCTTCTCCTCGATGATGCTGTGTTTGGAGGGAAACCCATTTGCGTATTACCTGCATGTGTTATAAAAATTCCTATTGAATCAGATGACGACACTGATGAGTCTCAGAGCAAAAGCCAAGGACAAAACCTGTCAGTATGTAGATCGATGGAGCGTATGGCTTCTTCAAAAGGCCTTGAACTAATGTTGAAGAAAAGCAGGGATGAGTTGGAGGAGAGCTTGAAGCTTTCGTCCGAGAAAGGAAGAAGAGTGGTAACGGAACAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

149

Amino Acids

16.37

Weight (kDa)

5.04

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 10 - 73 6.3e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016826)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g22220
malus_domestica MD16G1144300.v1.1
prunus_persica Prupe.1G211900_v2.0.a1
pyrus_communis pycom16g11360
rosa_chinensis RchiOBHm_Chr4g0428451
rosa_laevigata RLG00000007150
rosa_multiflora Rmu_sc0006844.1_g000006
rosa_roxburghii Rroxscaffold_5G00370130
rosa_rugosa Rorug04G0225300
rosa_samantha Rh4AG282900 Rh4BG288600 Rh4CG304200 Rh4DG285700
rosa_wichuraiana Rw4G024560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
Acc36I ACCTGC 1 cut(s) 238
AcsI RAATTY 1 cut(s) 246
AgsI TTSAA 6 cut(s) 26, 257, 345, 356, 367, 400
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AluBI AGCT 3 cut(s) 109, 396, 403
AluI AGCT 3 cut(s) 109, 396, 403
Alw26I GTCTC 1 cut(s) 285
AoxI GGCC 1 cut(s) 349
ApeKI GCWGC 1 cut(s) 157
ApoI RAATTY 1 cut(s) 246
AsuHPI GGTGA 1 cut(s) 61
BarI GAAGNNNNNNTAC 2 cut(s) 325, 357
BbvI GCAGC 1 cut(s) 169
BccI CCATC 1 cut(s) 319
BcoDI GTCTC 1 cut(s) 285
BfuAI ACCTGC 1 cut(s) 238
BisI GCNGC 1 cut(s) 158
BlsI GCNGC 1 cut(s) 159
BmsI GCATC 1 cut(s) 184
BpuEI CTTGAG 1 cut(s) 133
Bsa29I ATCGAT 1 cut(s) 323
BsaJI CCNNGG 2 cut(s) 44, 295
BseCI ATCGAT 1 cut(s) 323
BseDI CCNNGG 2 cut(s) 44, 295
BseGI GGATG 1 cut(s) 385
BseMII CTCAG 1 cut(s) 296
BseRI GAGGAG 2 cut(s) 176, 404
BseXI GCAGC 1 cut(s) 169
BshFI GGCC 1 cut(s) 351
BshVI ATCGAT 1 cut(s) 323
BsmAI GTCTC 1 cut(s) 285
BsnI GGCC 1 cut(s) 351
Bsp143I GATC 1 cut(s) 320
BspANI GGCC 1 cut(s) 351
BspCNI CTCAG 1 cut(s) 295
BspDI ATCGAT 1 cut(s) 323
BspMI ACCTGC 1 cut(s) 238
BspQI GCTCTTC 1 cut(s) 186
BssECI CCNNGG 2 cut(s) 44, 295
BssMI GATC 1 cut(s) 320
BssT1I CCWWGG 2 cut(s) 44, 295
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 2 cut(s) 186, 418
BstDEI CTNAG 1 cut(s) 282
BstEII GGTNACC 1 cut(s) 49
BstF5I GGATG 1 cut(s) 385
BstKTI GATC 1 cut(s) 323
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 1 cut(s) 320
BstNSI RCATGY 1 cut(s) 237
BstPI GGTNACC 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 169
Bsu15I ATCGAT 1 cut(s) 323
BsuRI GGCC 1 cut(s) 351
BsuTUI ATCGAT 1 cut(s) 323
BtsCI GGATG 1 cut(s) 385
BtsIMutI CAGTG 1 cut(s) 270
BveI ACCTGC 1 cut(s) 238
ClaI ATCGAT 1 cut(s) 323
CviAII CATG 2 cut(s) 234, 444
CviJI RGCY 7 cut(s) 109, 160, 294, 338, 351, 396, 403
CviKI_1 RGCY 7 cut(s) 109, 160, 294, 338, 351, 396, 403
DdeI CTNAG 1 cut(s) 282
DpnI GATC 1 cut(s) 322
DpnII GATC 1 cut(s) 320
Eam1104I CTCTTC 2 cut(s) 186, 418
EarI CTCTTC 2 cut(s) 186, 418
Eco130I CCWWGG 2 cut(s) 44, 295
Eco147I AGGCCT 1 cut(s) 351
Eco91I GGTNACC 1 cut(s) 49
EcoO65I GGTNACC 1 cut(s) 49
EcoT14I CCWWGG 2 cut(s) 44, 295
ErhI CCWWGG 2 cut(s) 44, 295
FaeI CATG 2 cut(s) 237, 447
FaiI YATR 7 cut(s) 138, 165, 235, 242, 316, 335, 445
FatI CATG 2 cut(s) 233, 443
Fnu4HI GCNGC 1 cut(s) 158
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 1 cut(s) 158
GluI GCNGC 1 cut(s) 158
HaeIII GGCC 1 cut(s) 351
Hin1II CATG 2 cut(s) 237, 447
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 2 cut(s) 257, 278
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 3 cut(s) 262, 285, 412
Hpy188III TCNNGA 1 cut(s) 112
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 282
Hsp92II CATG 2 cut(s) 237, 447
Kzo9I GATC 1 cut(s) 320
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 2 cut(s) 46, 328
LpnPI CCDG 4 cut(s) 119, 243, 320, 361
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 184
MaeIII GTNAC 3 cut(s) 49, 145, 430
MalI GATC 1 cut(s) 322
MboI GATC 1 cut(s) 320
MboII GAAGA 6 cut(s) 67, 173, 333, 379, 432, 435
MluCI AATT 1 cut(s) 246
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 1 cut(s) 366
MnlI CCTC 4 cut(s) 65, 197, 200, 382
MseI TTAA 1 cut(s) 17
NdeII GATC 1 cut(s) 320
NlaIII CATG 2 cut(s) 237, 447
NmuCI GTSAC 2 cut(s) 49, 145
NspI RCATGY 1 cut(s) 237
PceI AGGCCT 1 cut(s) 351
PciSI GCTCTTC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 1 cut(s) 159
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
PsiI TTATAA 1 cut(s) 242
PspEI GGTNACC 1 cut(s) 49
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 1 cut(s) 158
Sau3AI GATC 1 cut(s) 320
SchI GAGTC 1 cut(s) 287
SetI ASST 6 cut(s) 39, 111, 232, 309, 398, 405
SfaNI GCATC 1 cut(s) 184
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
Sse9I AATT 1 cut(s) 246
SseBI AGGCCT 1 cut(s) 351
StuI AGGCCT 1 cut(s) 351
StyI CCWWGG 2 cut(s) 44, 295
TaaI ACNGT 1 cut(s) 94
TaqI TCGA 2 cut(s) 189, 323
TasI AATT 1 cut(s) 246
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TscAI CASTG 1 cut(s) 277
TseFI GTSAC 2 cut(s) 49, 145
TseI GCWGC 1 cut(s) 157
Tsp45I GTSAC 2 cut(s) 49, 145
TspRI CASTG 1 cut(s) 277
XapI RAATTY 1 cut(s) 246
XceI RCATGY 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.