RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g22220 |
| malus_domestica | MD16G1144300.v1.1 |
| prunus_persica | Prupe.1G211900_v2.0.a1 |
| pyrus_communis | pycom16g11360 |
| rosa_chinensis | RchiOBHm_Chr4g0428451 |
| rosa_laevigata | RLG00000007150 |
| rosa_multiflora | Rmu_sc0006844.1_g000006 |
| rosa_roxburghii | Rroxscaffold_5G00370130 |
| rosa_rugosa | Rorug04G0225300 |
| rosa_samantha | Rh4AG282900 Rh4BG288600 Rh4CG304200 Rh4DG285700 |
| rosa_wichuraiana | Rw4G024560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 109 |
| AciI | CCGC | 2 cut(s) | 281, 323 |
| AcsI | RAATTY | 1 cut(s) | 117 |
| AgsI | TTSAA | 3 cut(s) | 10, 232, 265 |
| AluBI | AGCT | 1 cut(s) | 268 |
| AluI | AGCT | 1 cut(s) | 268 |
| AoxI | GGCC | 1 cut(s) | 79 |
| ApeKI | GCWGC | 1 cut(s) | 335 |
| ApoI | RAATTY | 1 cut(s) | 117 |
| BbsI | GAAGAC | 1 cut(s) | 144 |
| BbvI | GCAGC | 1 cut(s) | 347 |
| BccI | CCATC | 1 cut(s) | 244 |
| BclI | TGATCA | 2 cut(s) | 51, 151 |
| BfaI | CTAG | 1 cut(s) | 390 |
| BfmI | CTRYAG | 1 cut(s) | 123 |
| BfuAI | ACCTGC | 1 cut(s) | 109 |
| BisI | GCNGC | 1 cut(s) | 336 |
| BlsI | GCNGC | 1 cut(s) | 337 |
| BmsI | GCATC | 2 cut(s) | 55, 394 |
| BpiI | GAAGAC | 1 cut(s) | 144 |
| BpuEI | CTTGAG | 1 cut(s) | 406 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 245, 275 |
| Bse1I | ACTGG | 1 cut(s) | 388 |
| BseGI | GGATG | 2 cut(s) | 70, 183 |
| BseMII | CTCAG | 1 cut(s) | 447 |
| BseNI | ACTGG | 1 cut(s) | 388 |
| BseRI | GAGGAG | 1 cut(s) | 269 |
| BseXI | GCAGC | 1 cut(s) | 347 |
| BsgI | GTGCAG | 1 cut(s) | 339 |
| BshFI | GGCC | 1 cut(s) | 81 |
| BsnI | GGCC | 1 cut(s) | 81 |
| Bsp143I | GATC | 3 cut(s) | 51, 151, 308 |
| BspACI | CCGC | 2 cut(s) | 281, 323 |
| BspANI | GGCC | 1 cut(s) | 81 |
| BspCNI | CTCAG | 1 cut(s) | 446 |
| BspMI | ACCTGC | 1 cut(s) | 109 |
| BspQI | GCTCTTC | 1 cut(s) | 23 |
| BsrI | ACTGG | 1 cut(s) | 388 |
| BssMI | GATC | 3 cut(s) | 51, 151, 308 |
| Bst6I | CTCTTC | 3 cut(s) | 23, 240, 446 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 320, 386 |
| BstC8I | GCNNGC | 1 cut(s) | 333 |
| BstDEI | CTNAG | 1 cut(s) | 433 |
| BstF5I | GGATG | 2 cut(s) | 70, 183 |
| BstKTI | GATC | 3 cut(s) | 54, 154, 311 |
| BstMBI | GATC | 3 cut(s) | 51, 151, 308 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 320, 386 |
| BstSFI | CTRYAG | 1 cut(s) | 123 |
| BstV1I | GCAGC | 1 cut(s) | 347 |
| BstV2I | GAAGAC | 1 cut(s) | 144 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 89 |
| BsuRI | GGCC | 1 cut(s) | 81 |
| BtsCI | GGATG | 2 cut(s) | 70, 183 |
| BveI | ACCTGC | 1 cut(s) | 109 |
| Cac8I | GCNNGC | 1 cut(s) | 333 |
| CseI | GACGC | 1 cut(s) | 351 |
| CviAII | CATG | 1 cut(s) | 346 |
| CviJI | RGCY | 6 cut(s) | 35, 81, 213, 268, 396, 419 |
| CviKI_1 | RGCY | 6 cut(s) | 35, 81, 213, 268, 396, 419 |
| DdeI | CTNAG | 1 cut(s) | 433 |
| DpnI | GATC | 3 cut(s) | 53, 153, 310 |
| DpnII | GATC | 3 cut(s) | 51, 151, 308 |
| Eam1104I | CTCTTC | 3 cut(s) | 23, 240, 446 |
| EarI | CTCTTC | 3 cut(s) | 23, 240, 446 |
| EcoRI | GAATTC | 1 cut(s) | 117 |
| FaeI | CATG | 1 cut(s) | 349 |
| FatI | CATG | 1 cut(s) | 345 |
| FauI | CCCGC | 1 cut(s) | 274 |
| FauNDI | CATATG | 1 cut(s) | 106 |
| FbaI | TGATCA | 2 cut(s) | 51, 151 |
| Fnu4HI | GCNGC | 1 cut(s) | 336 |
| FokI | GGATG | 2 cut(s) | 77, 170 |
| Fsp4HI | GCNGC | 1 cut(s) | 336 |
| FspBI | CTAG | 1 cut(s) | 390 |
| GluI | GCNGC | 1 cut(s) | 336 |
| HaeIII | GGCC | 1 cut(s) | 81 |
| HgaI | GACGC | 1 cut(s) | 351 |
| Hin1II | CATG | 1 cut(s) | 349 |
| Hpy188I | TCNGA | 4 cut(s) | 133, 274, 403, 436 |
| Hpy188III | TCNNGA | 1 cut(s) | 187 |
| HpyAV | CCTTC | 1 cut(s) | 37 |
| HpyCH4IV | ACGT | 1 cut(s) | 141 |
| HpyCH4V | TGCA | 5 cut(s) | 61, 104, 356, 380, 407 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 320, 386 |
| HpyF3I | CTNAG | 1 cut(s) | 433 |
| HpySE526I | ACGT | 1 cut(s) | 141 |
| Hsp92II | CATG | 1 cut(s) | 349 |
| Ksp22I | TGATCA | 2 cut(s) | 51, 151 |
| Kzo9I | GATC | 3 cut(s) | 51, 151, 308 |
| LguI | GCTCTTC | 1 cut(s) | 23 |
| LpnPI | CCDG | 6 cut(s) | 47, 114, 173, 317, 324, 369 |
| Lsp1109I | GCAGC | 1 cut(s) | 347 |
| LweI | GCATC | 2 cut(s) | 55, 394 |
| MaeI | CTAG | 1 cut(s) | 390 |
| MaeII | ACGT | 1 cut(s) | 141 |
| MalI | GATC | 3 cut(s) | 53, 153, 310 |
| MboI | GATC | 3 cut(s) | 51, 151, 308 |
| MboII | GAAGA | 5 cut(s) | 10, 149, 244, 257, 463 |
| MluCI | AATT | 5 cut(s) | 87, 117, 173, 315, 444 |
| MmeI | TCCRAC | 1 cut(s) | 252 |
| MnlI | CCTC | 6 cut(s) | 71, 198, 247, 386, 430, 442 |
| MseI | TTAA | 1 cut(s) | 144 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 320, 386 |
| NdeI | CATATG | 1 cut(s) | 106 |
| NdeII | GATC | 3 cut(s) | 51, 151, 308 |
| NlaIII | CATG | 1 cut(s) | 349 |
| PciSI | GCTCTTC | 1 cut(s) | 23 |
| PkrI | GCNGC | 1 cut(s) | 337 |
| SapI | GCTCTTC | 1 cut(s) | 23 |
| SaqAI | TTAA | 1 cut(s) | 144 |
| SatI | GCNGC | 1 cut(s) | 336 |
| Sau3AI | GATC | 3 cut(s) | 51, 151, 308 |
| SetI | ASST | 6 cut(s) | 74, 103, 144, 181, 270, 428 |
| SfaNI | GCATC | 2 cut(s) | 55, 394 |
| SfcI | CTRYAG | 1 cut(s) | 123 |
| SmlI | CTYRAG | 1 cut(s) | 421 |
| SmoI | CTYRAG | 1 cut(s) | 421 |
| Sse9I | AATT | 5 cut(s) | 87, 117, 173, 315, 444 |
| SsiI | CCGC | 2 cut(s) | 281, 323 |
| SspMI | CTAG | 1 cut(s) | 390 |
| TaiI | ACGT | 1 cut(s) | 144 |
| TasI | AATT | 5 cut(s) | 87, 117, 173, 315, 444 |
| Tru1I | TTAA | 1 cut(s) | 144 |
| Tru9I | TTAA | 1 cut(s) | 144 |
| TseI | GCWGC | 1 cut(s) | 335 |
| TspDTI | ATGAA | 4 cut(s) | 150, 172, 311, 377 |
| XapI | RAATTY | 1 cut(s) | 117 |
| XspI | CTAG | 1 cut(s) | 390 |