FvH4_4g23050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0017650
Physical Location & Seq
Reverse (-)
25645546 .. 25647100
1555 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23050.t1

Sequence Viewer

Length: 867 bp
ATGGCGTCTTTTTCTCAACATACTCTTGTTCTATGCCAACACCTCCTAATGAGATTCAGCAGTAGCCTCCGCGCCGCCTGCTCCATGATGCATACCCCTTCTACCGGGCATAGTACTAAAAATGAAGTACTCGGTGAATCGAGACCACTTAATCTTGCCGATACAGACACCCCCCATCTAGCTCTCAAAGTCTCAACATACTGCCGGACGGGCCTTAAGTATCTTGGCCCAACAGATGTGTCGTCTGTGGAGAGGTTAGGAGGCCAGCTCGCTTTGTGCAAATTAGCTTTGTTCTTGAGCATTTATTCTGGGAATGGAACGAGCTTGTTGTTGACGTTTCCACCGGAATTGAAGCACTGCAGAACTCTTTTGAGTGTTACAGACTTGGAACTATCTAAGCTAAGGCTTGCAGCAAAGCAGAAAAGAAATGAGCTACCACCCTGTTCCCGGAGAGCCTCCACCTCCTCCACATCCGCCGGGCAAGTTACCAGCCCTGCATTGATCTCTTTGCCTGTGTTGCCTCCACCGCCACTCGACTTTGGGATGCCGCCGCCGCCACCAGAATACCCTGGTCCTCCGCCTCCCAGCCCACCGCCACCAGGGTTTCCGCATCCTGCACCTCCCGGACCTCCTCCTCCTCCACCAGGGTTCCCTCATCCTCCGCCTCATGGACCGCCGCCACCAGGCTATCAAGACTACTTTTATCCACCACCACCACCGCCGCCGTCAACCTTACCCCCGCCCCAACCCCCTGCACGGGAGGACGATGACTGCCTTTCATGCTTCAGAGGCTGGTATGTCCTGATATCCCAACTTAACTATGTAGAACCTTTAGACATTGAAGGCGGTTTAAACAGCAAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

289

Amino Acids

30.89

Weight (kDa)

7.63

Isoelectric Point (pI)

67.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017650)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g23050
malus_domestica MD12G1127700.v1.1 MD16G1127000.v1.1
pyrus_communis pycom16g10780
rosa_chinensis RchiOBHm_Chr4g0429321
rosa_laevigata RLG00000007081
rosa_roxburghii Rroxscaffold_5G00370930
rosa_samantha Rh4AG290700 Rh4BG296500 Rh4CG312200 Rh4DG293600
rosa_wichuraiana Rw4G025170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 72
AcuI CTGAAG 1 cut(s) 769
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 115, 129
AfiI CCNNNNNNNGG 8 cut(s) 104, 447, 599, 644, 668, 683, 756, 757
AflII CTTAAG 1 cut(s) 215
AgsI TTSAA 2 cut(s) 352, 842
AjnI CCWGG 4 cut(s) 568, 598, 643, 682
AluBI AGCT 6 cut(s) 182, 268, 287, 324, 400, 433
AluI AGCT 6 cut(s) 182, 268, 287, 324, 400, 433
Alw26I GTCTC 2 cut(s) 136, 196
AlwNI CAGNNNCTG 1 cut(s) 792
AoxI GGCC 3 cut(s) 211, 226, 262
ApeKI GCWGC 1 cut(s) 410
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 5 cut(s) 211, 227, 572, 626, 671
AsuC2I CCSGG 4 cut(s) 106, 448, 478, 624
AsuHPI GGTGA 1 cut(s) 146
AvaII GGWCC 3 cut(s) 572, 626, 671
BbvI GCAGC 1 cut(s) 422
BccI CCATC 1 cut(s) 183
BceAI ACGGC 1 cut(s) 709
BciT130I CCWGG 4 cut(s) 570, 600, 645, 684
BcnI CCSGG 4 cut(s) 106, 448, 478, 624
BcoDI GTCTC 2 cut(s) 136, 196
BfaI CTAG 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 358
BfrI CTTAAG 1 cut(s) 215
BglI GCCNNNNNGGC 1 cut(s) 210
BisI GCNGC 7 cut(s) 75, 411, 548, 551, 554, 677, 722
BlsI GCNGC 7 cut(s) 76, 412, 549, 552, 555, 678, 723
BmcAI AGTACT 2 cut(s) 115, 129
Bme1390I CCNGG 8 cut(s) 106, 448, 478, 570, 600, 624, 645, 684
Bme18I GGWCC 3 cut(s) 572, 626, 671
BmgT120I GGNCC 5 cut(s) 211, 227, 572, 626, 671
BmiI GGNNCC 1 cut(s) 650
BmrFI CCNGG 8 cut(s) 106, 448, 478, 570, 600, 624, 645, 684
BmsI GCATC 3 cut(s) 78, 534, 619
BplI GAGNNNNNCTC 2 cut(s) 252, 284
Bpu10I CCTNAGC 1 cut(s) 401
BpuEI CTTGAG 1 cut(s) 316
BpuMI CCSGG 4 cut(s) 106, 448, 478, 624
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 3 cut(s) 568, 599, 644
BsaWI WCCGGW 1 cut(s) 343
Bsc4I CCNNNNNNNGG 8 cut(s) 104, 447, 599, 644, 668, 683, 756, 757
BseBI CCWGG 4 cut(s) 570, 600, 645, 684
BseDI CCNNGG 3 cut(s) 568, 599, 644
BseGI GGATG 4 cut(s) 470, 549, 610, 655
BseLI CCNNNNNNNGG 8 cut(s) 104, 447, 599, 644, 668, 683, 756, 757
BseRI GAGGAG 4 cut(s) 454, 621, 624, 627
BseXI GCAGC 1 cut(s) 422
BseYI CCCAGC 1 cut(s) 584
BsgI GTGCAG 2 cut(s) 600, 738
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 3 cut(s) 213, 228, 264
BsiSI CCGG 6 cut(s) 105, 205, 344, 448, 477, 624
BslI CCNNNNNNNGG 8 cut(s) 104, 447, 599, 644, 668, 683, 756, 757
BsmAI GTCTC 2 cut(s) 136, 196
BsnI GGCC 3 cut(s) 213, 228, 264
Bso31I GGTCTC 1 cut(s) 136
Bsp143I GATC 1 cut(s) 501
BspANI GGCC 3 cut(s) 213, 228, 264
BspFNI CGCG 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 650
BspMAI CTGCAG 1 cut(s) 362
BspTI CTTAAG 1 cut(s) 215
BspTNI GGTCTC 1 cut(s) 136
BssECI CCNNGG 3 cut(s) 568, 599, 644
BssMI GATC 1 cut(s) 501
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 4 cut(s) 570, 600, 645, 684
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 215
BstC8I GCNNGC 4 cut(s) 79, 266, 270, 408
BstDEI CTNAG 3 cut(s) 396, 401, 864
BstENI CCTNNNNNAGG 1 cut(s) 642
BstF5I GGATG 4 cut(s) 470, 549, 610, 655
BstFNI CGCG 1 cut(s) 72
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 1 cut(s) 504
BstMAI GTCTC 2 cut(s) 136, 196
BstMBI GATC 1 cut(s) 501
BstMWI GCNNNNNNNGC 7 cut(s) 78, 210, 517, 526, 553, 780, 789
BstNI CCWGG 4 cut(s) 570, 600, 645, 684
BstSCI CCNGG 8 cut(s) 104, 446, 476, 568, 598, 622, 643, 682
BstSFI CTRYAG 1 cut(s) 358
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 422
BsuRI GGCC 3 cut(s) 213, 228, 264
BtsCI GGATG 4 cut(s) 470, 549, 610, 655
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 1 cut(s) 355
Cac8I GCNNGC 4 cut(s) 79, 266, 270, 408
CaiI CAGNNNCTG 1 cut(s) 792
CfoI GCGC 1 cut(s) 74
Cfr13I GGNCC 5 cut(s) 211, 227, 572, 626, 671
Csp6I GTAC 2 cut(s) 114, 128
CspCI CAANNNNNGTGG 2 cut(s) 330, 365
CviAII CATG 3 cut(s) 85, 668, 780
CviQI GTAC 2 cut(s) 114, 128
DdeI CTNAG 3 cut(s) 396, 401, 864
DpnI GATC 1 cut(s) 503
DpnII GATC 1 cut(s) 501
DraI TTTAAA 1 cut(s) 852
EciI GGCGGA 3 cut(s) 463, 567, 651
Eco31I GGTCTC 1 cut(s) 136
Eco32I GATATC 1 cut(s) 807
Eco47I GGWCC 3 cut(s) 572, 626, 671
Eco57I CTGAAG 1 cut(s) 769
EcoNI CCTNNNNNAGG 1 cut(s) 642
EcoRII CCWGG 4 cut(s) 568, 598, 643, 682
EcoRV GATATC 1 cut(s) 807
EcoT22I ATGCAT 1 cut(s) 93
FaeI CATG 3 cut(s) 88, 671, 783
FatI CATG 3 cut(s) 84, 667, 779
FauI CCCGC 1 cut(s) 747
Fnu4HI GCNGC 7 cut(s) 75, 411, 548, 551, 554, 677, 722
FokI GGATG 4 cut(s) 457, 556, 597, 642
Fsp4HI GCNGC 7 cut(s) 75, 411, 548, 551, 554, 677, 722
FspBI CTAG 1 cut(s) 179
GlaI GCGC 1 cut(s) 73
GluI GCNGC 7 cut(s) 75, 411, 548, 551, 554, 677, 722
GsaI CCCAGC 1 cut(s) 588
HaeIII GGCC 3 cut(s) 213, 228, 264
HapII CCGG 6 cut(s) 105, 205, 344, 448, 477, 624
HhaI GCGC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 88, 671, 783
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HincII GTYRAC 2 cut(s) 333, 729
HindII GTYRAC 2 cut(s) 333, 729
HinfI GANTC 2 cut(s) 54, 137
HpaII CCGG 6 cut(s) 105, 205, 344, 448, 477, 624
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 2 cut(s) 333, 729
Hpy188I TCNGA 1 cut(s) 788
Hpy188III TCNNGA 4 cut(s) 141, 295, 692, 802
Hpy8I GTNNAC 2 cut(s) 333, 729
HpyAV CCTTC 2 cut(s) 108, 836
HpyCH4IV ACGT 1 cut(s) 335
HpyCH4V TGCA 7 cut(s) 91, 279, 360, 410, 497, 617, 755
HpyF10VI GCNNNNNNNGC 7 cut(s) 78, 210, 517, 526, 553, 780, 789
HpyF3I CTNAG 3 cut(s) 396, 401, 864
HpySE526I ACGT 1 cut(s) 335
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 88, 671, 783
HspAI GCGC 1 cut(s) 72
Kzo9I GATC 1 cut(s) 501
LmnI GCTCC 1 cut(s) 86
Lsp1109I GCAGC 1 cut(s) 422
LweI GCATC 3 cut(s) 78, 534, 619
MaeI CTAG 1 cut(s) 179
MaeII ACGT 1 cut(s) 335
MaeIII GTNAC 2 cut(s) 376, 484
MalI GATC 1 cut(s) 503
MboI GATC 1 cut(s) 501
MluCI AATT 2 cut(s) 281, 347
Mph1103I ATGCAT 1 cut(s) 93
MseI TTAA 4 cut(s) 150, 216, 816, 851
MspCI CTTAAG 1 cut(s) 215
MspI CCGG 6 cut(s) 105, 205, 344, 448, 477, 624
MspR9I CCNGG 8 cut(s) 106, 448, 478, 570, 600, 624, 645, 684
MssI GTTTAAAC 1 cut(s) 852
MvaI CCWGG 4 cut(s) 570, 600, 645, 684
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 7 cut(s) 78, 210, 517, 526, 553, 780, 789
NciI CCSGG 4 cut(s) 106, 448, 478, 624
NdeII GATC 1 cut(s) 501
NlaIII CATG 3 cut(s) 88, 671, 783
NlaIV GGNNCC 1 cut(s) 650
NsiI ATGCAT 1 cut(s) 93
PfeI GAWTC 2 cut(s) 54, 137
PfoI TCCNGGA 2 cut(s) 446, 622
PkrI GCNGC 7 cut(s) 76, 412, 549, 552, 555, 678, 723
PmeI GTTTAAAC 1 cut(s) 852
Psp6I CCWGG 4 cut(s) 568, 598, 643, 682
PspFI CCCAGC 1 cut(s) 584
PspGI CCWGG 4 cut(s) 568, 598, 643, 682
PspN4I GGNNCC 1 cut(s) 650
PspPI GGNCC 5 cut(s) 211, 227, 572, 626, 671
PstI CTGCAG 1 cut(s) 362
PstNI CAGNNNCTG 1 cut(s) 792
RsaI GTAC 2 cut(s) 115, 129
RsaNI GTAC 2 cut(s) 114, 128
SaqAI TTAA 4 cut(s) 150, 216, 816, 851
SatI GCNGC 7 cut(s) 75, 411, 548, 551, 554, 677, 722
Sau3AI GATC 1 cut(s) 501
Sau96I GGNCC 5 cut(s) 211, 227, 572, 626, 671
ScaI AGTACT 2 cut(s) 115, 129
ScrFI CCNGG 8 cut(s) 106, 448, 478, 570, 600, 624, 645, 684
SfaNI GCATC 3 cut(s) 78, 534, 619
SfcI CTRYAG 1 cut(s) 358
SinI GGWCC 3 cut(s) 572, 626, 671
SmlI CTYRAG 2 cut(s) 215, 295
SmoI CTYRAG 2 cut(s) 215, 295
Sse9I AATT 2 cut(s) 281, 347
SspMI CTAG 1 cut(s) 179
StyD4I CCNGG 8 cut(s) 104, 446, 476, 568, 598, 622, 643, 682
TaiI ACGT 1 cut(s) 338
TaqI TCGA 2 cut(s) 140, 534
TasI AATT 2 cut(s) 281, 347
TatI WGTACW 2 cut(s) 113, 127
TauI GCSGC 6 cut(s) 77, 550, 553, 556, 679, 724
TfiI GAWTC 2 cut(s) 54, 137
Tru1I TTAA 4 cut(s) 150, 216, 816, 851
Tru9I TTAA 4 cut(s) 150, 216, 816, 851
TscAI CASTG 1 cut(s) 362
TseI GCWGC 1 cut(s) 410
TspDTI ATGAA 2 cut(s) 138, 768
TspRI CASTG 1 cut(s) 362
Vha464I CTTAAG 1 cut(s) 215
VpaK11BI GGWCC 3 cut(s) 572, 626, 671
XagI CCTNNNNNAGG 1 cut(s) 642
XspI CTAG 1 cut(s) 179
ZrmI AGTACT 2 cut(s) 115, 129
Zsp2I ATGCAT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.