Rh4BG296500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0017650
Physical Location & Seq
Reverse (-)
46808014 .. 46808821
808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG296500.1

Sequence Viewer

Length: 342 bp
ATGAGTTACCGCCCTATTCCTGGAGAACCTCCACCGCCACCTCCACCAGAGTTTGCGCCTCCTCCGCCACTCGACTTTGGGATGCCACCGCCGCCACCAGAACACCCTCATCCTCCGCCTCCCGGTCCACCCCCACCAGGGTTCCCCCATCCTCCGCCTCCCGGACCCCCTTCACCAGGATTCCCTTATCCTCCGCCTCCCGGACCCCCTCCACCACCACCACCGTCGACTCTACCCCCGCCCCAACCCCCTCGGCAGGAAGATGATGACTGCCTTTCATGTTTCAGAGGCTGTTTGGCTGCACTTTGCTGCTGCTTCCTGGTGGACTCGTGCTGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

11.84

Weight (kDa)

4.54

Isoelectric Point (pI)

111.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 79 - 112 1.4e-07 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017650)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g23050
malus_domestica MD12G1127700.v1.1 MD16G1127000.v1.1
pyrus_communis pycom16g10780
rosa_chinensis RchiOBHm_Chr4g0429321
rosa_laevigata RLG00000007081
rosa_roxburghii Rroxscaffold_5G00370930
rosa_samantha Rh4AG290700 Rh4BG296500 Rh4CG312200 Rh4DG293600
rosa_wichuraiana Rw4G025170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 227
AciI CCGC 9 cut(s) 10, 35, 65, 89, 92, 116, 155, 194, 239
AfiI CCNNNNNNNGG 8 cut(s) 20, 122, 137, 138, 161, 176, 200, 256
AjnI CCWGG 4 cut(s) 19, 136, 175, 318
AlwNI CAGNNNCTG 1 cut(s) 291
ApeKI GCWGC 4 cut(s) 299, 309, 312, 333
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 3 cut(s) 125, 164, 203
AsuC2I CCSGG 3 cut(s) 123, 162, 201
AsuHPI GGTGA 1 cut(s) 165
AvaII GGWCC 3 cut(s) 125, 164, 203
BauI CACGAG 1 cut(s) 328
BbvI GCAGC 4 cut(s) 286, 296, 299, 320
BccI CCATC 1 cut(s) 156
BciT130I CCWGG 4 cut(s) 21, 138, 177, 320
BcnI CCSGG 3 cut(s) 123, 162, 201
BisI GCNGC 5 cut(s) 92, 300, 310, 313, 334
BlsI GCNGC 5 cut(s) 93, 301, 311, 314, 335
Bme1390I CCNGG 7 cut(s) 21, 123, 138, 162, 177, 201, 320
Bme18I GGWCC 3 cut(s) 125, 164, 203
BmgT120I GGNCC 3 cut(s) 125, 164, 203
BmiI GGNNCC 3 cut(s) 143, 166, 205
BmrFI CCNGG 7 cut(s) 21, 123, 138, 162, 177, 201, 320
BmsI GCATC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 42
BpuMI CCSGG 3 cut(s) 123, 162, 201
BsaJI CCNNGG 2 cut(s) 137, 251
Bsc4I CCNNNNNNNGG 8 cut(s) 20, 122, 137, 138, 161, 176, 200, 256
BseBI CCWGG 4 cut(s) 21, 138, 177, 320
BseDI CCNNGG 2 cut(s) 137, 251
BseGI GGATG 3 cut(s) 87, 109, 148
BseLI CCNNNNNNNGG 8 cut(s) 20, 122, 137, 138, 161, 176, 200, 256
BseRI GAGGAG 1 cut(s) 51
BseXI GCAGC 4 cut(s) 286, 296, 299, 320
BsgI GTGCAG 1 cut(s) 285
BsiSI CCGG 3 cut(s) 123, 162, 201
BslI CCNNNNNNNGG 8 cut(s) 20, 122, 137, 138, 161, 176, 200, 256
BspACI CCGC 9 cut(s) 10, 35, 65, 89, 92, 116, 155, 194, 239
BspLI GGNNCC 3 cut(s) 143, 166, 205
BssECI CCNNGG 2 cut(s) 137, 251
BssSI CACGAG 1 cut(s) 328
Bst2BI CACGAG 1 cut(s) 328
Bst2UI CCWGG 4 cut(s) 21, 138, 177, 320
Bst4CI ACNGT 1 cut(s) 225
BstENI CCTNNNNNAGG 1 cut(s) 174
BstF5I GGATG 3 cut(s) 87, 109, 148
BstHHI GCGC 1 cut(s) 58
BstMWI GCNNNNNNNGC 2 cut(s) 64, 91
BstNI CCWGG 4 cut(s) 21, 138, 177, 320
BstSCI CCNGG 7 cut(s) 19, 121, 136, 160, 175, 199, 318
BstV1I GCAGC 4 cut(s) 286, 296, 299, 320
BtsCI GGATG 3 cut(s) 87, 109, 148
CaiI CAGNNNCTG 1 cut(s) 291
CfoI GCGC 1 cut(s) 58
Cfr13I GGNCC 3 cut(s) 125, 164, 203
CviAII CATG 1 cut(s) 279
CviJI RGCY 2 cut(s) 291, 299
CviKI_1 RGCY 2 cut(s) 291, 299
EciI GGCGGA 4 cut(s) 54, 105, 144, 183
Eco47I GGWCC 3 cut(s) 125, 164, 203
EcoNI CCTNNNNNAGG 1 cut(s) 174
EcoRII CCWGG 4 cut(s) 19, 136, 175, 318
FaeI CATG 1 cut(s) 282
FaiI YATR 1 cut(s) 280
FatI CATG 1 cut(s) 278
FauI CCCGC 1 cut(s) 246
FblI GTMKAC 1 cut(s) 227
Fnu4HI GCNGC 5 cut(s) 92, 300, 310, 313, 334
FokI GGATG 3 cut(s) 94, 96, 135
Fsp4HI GCNGC 5 cut(s) 92, 300, 310, 313, 334
GlaI GCGC 1 cut(s) 57
GluI GCNGC 5 cut(s) 92, 300, 310, 313, 334
GsuI CTGGAG 1 cut(s) 42
HapII CCGG 3 cut(s) 123, 162, 201
HhaI GCGC 1 cut(s) 58
Hin1II CATG 1 cut(s) 282
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HinfI GANTC 3 cut(s) 180, 229, 326
HpaII CCGG 3 cut(s) 123, 162, 201
HphI GGTGA 1 cut(s) 165
Hpy166II GTNNAC 3 cut(s) 128, 228, 325
Hpy188I TCNGA 1 cut(s) 287
Hpy8I GTNNAC 3 cut(s) 128, 228, 325
Hpy99I CGWCG 1 cut(s) 229
HpyAV CCTTC 1 cut(s) 180
HpyCH4III ACNGT 1 cut(s) 225
HpyCH4V TGCA 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 91
Hsp92II CATG 1 cut(s) 282
HspAI GCGC 1 cut(s) 56
Lsp1109I GCAGC 4 cut(s) 286, 296, 299, 320
LweI GCATC 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 5
MboII GAAGA 1 cut(s) 272
MlyI GAGTC 2 cut(s) 223, 320
MseI TTAA 1 cut(s) 340
MspI CCGG 3 cut(s) 123, 162, 201
MspR9I CCNGG 7 cut(s) 21, 123, 138, 162, 177, 201, 320
MvaI CCWGG 4 cut(s) 21, 138, 177, 320
MwoI GCNNNNNNNGC 2 cut(s) 64, 91
NciI CCSGG 3 cut(s) 123, 162, 201
NlaIII CATG 1 cut(s) 282
NlaIV GGNNCC 3 cut(s) 143, 166, 205
NmeAIII GCCGAG 1 cut(s) 232
PfeI GAWTC 1 cut(s) 180
PfoI TCCNGGA 3 cut(s) 19, 160, 199
PkrI GCNGC 5 cut(s) 93, 301, 311, 314, 335
PleI GAGTC 2 cut(s) 223, 320
PpsI GAGTC 2 cut(s) 223, 320
Psp6I CCWGG 4 cut(s) 19, 136, 175, 318
PspGI CCWGG 4 cut(s) 19, 136, 175, 318
PspN4I GGNNCC 3 cut(s) 143, 166, 205
PspPI GGNCC 3 cut(s) 125, 164, 203
PstNI CAGNNNCTG 1 cut(s) 291
SalI GTCGAC 1 cut(s) 226
SaqAI TTAA 1 cut(s) 340
SatI GCNGC 5 cut(s) 92, 300, 310, 313, 334
Sau96I GGNCC 3 cut(s) 125, 164, 203
SchI GAGTC 2 cut(s) 223, 320
ScrFI CCNGG 7 cut(s) 21, 123, 138, 162, 177, 201, 320
SetI ASST 2 cut(s) 31, 43
SfaNI GCATC 1 cut(s) 72
SinI GGWCC 3 cut(s) 125, 164, 203
SsiI CCGC 9 cut(s) 10, 35, 65, 89, 92, 116, 155, 194, 239
StyD4I CCNGG 7 cut(s) 19, 121, 136, 160, 175, 199, 318
TaaI ACNGT 1 cut(s) 225
TaqI TCGA 2 cut(s) 72, 227
TauI GCSGC 1 cut(s) 94
TfiI GAWTC 1 cut(s) 180
Tru1I TTAA 1 cut(s) 340
Tru9I TTAA 1 cut(s) 340
TseI GCWGC 4 cut(s) 299, 309, 312, 333
TspDTI ATGAA 1 cut(s) 267
VpaK11BI GGWCC 3 cut(s) 125, 164, 203
XagI CCTNNNNNAGG 1 cut(s) 174
XmiI GTMKAC 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.