RLG00000007081

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0017650
Physical Location & Seq
Forward (+)
13379964 .. 13380818
855 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007081

Sequence Viewer

Length: 408 bp
ATGAGTTACCGCCCTATTCCTGGAGAACCTCCACCGCCACCTCCACCAGAGTTTGCGCCTCCTCCGCCACTCGACTTTGGGATGCCACCGCCACCGCCGCCACCAGAACACCCTCATCCTCCGCCTCCCGGTCCACCTCCGCCTCCCGGACCCCCTCCACCAGGATTCCCTTATCCTCCGCCTCCCGGACCGCCTCCACCAGAGTTCCCTCATCCTCCACCTCCCGGACCACCGCCACCTGGCTATCAGGGCTACTTTAATCCTCCTCCTCCTCCTCCACCACCACCACCGTCGACTCTACCCCCGCCCCAACCCCGTCGGCAGGAAGATGATGACTGCCTTTCATGTTTCAGAGGCTGTTTGGCTGCACTTTGCTGCTGCTTCCTGGTGGACTCGTGCTGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.23

Weight (kDa)

4.63

Isoelectric Point (pI)

112.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 101 - 134 4e-07 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017650)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g23050
malus_domestica MD12G1127700.v1.1 MD16G1127000.v1.1
pyrus_communis pycom16g10780
rosa_chinensis RchiOBHm_Chr4g0429321
rosa_laevigata RLG00000007081
rosa_roxburghii Rroxscaffold_5G00370930
rosa_samantha Rh4AG290700 Rh4BG296500 Rh4CG312200 Rh4DG293600
rosa_wichuraiana Rw4G025170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 293
AfiI CCNNNNNNNGG 8 cut(s) 20, 128, 146, 161, 185, 224, 239, 322
AjnI CCWGG 4 cut(s) 19, 160, 238, 384
AlwNI CAGNNNCTG 1 cut(s) 357
ApeKI GCWGC 4 cut(s) 365, 375, 378, 399
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 4 cut(s) 131, 149, 188, 227
AsuC2I CCSGG 4 cut(s) 129, 147, 186, 225
AvaII GGWCC 4 cut(s) 131, 149, 188, 227
BauI CACGAG 1 cut(s) 394
BbvI GCAGC 4 cut(s) 352, 362, 365, 386
BciT130I CCWGG 4 cut(s) 21, 162, 240, 386
BcnI CCSGG 4 cut(s) 129, 147, 186, 225
BisI GCNGC 5 cut(s) 98, 366, 376, 379, 400
BlsI GCNGC 5 cut(s) 99, 367, 377, 380, 401
Bme1390I CCNGG 8 cut(s) 21, 129, 147, 162, 186, 225, 240, 386
Bme18I GGWCC 4 cut(s) 131, 149, 188, 227
BmgT120I GGNCC 4 cut(s) 131, 149, 188, 227
BmiI GGNNCC 1 cut(s) 151
BmrFI CCNGG 8 cut(s) 21, 129, 147, 162, 186, 225, 240, 386
BmsI GCATC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 42
BpuMI CCSGG 4 cut(s) 129, 147, 186, 225
Bsc4I CCNNNNNNNGG 8 cut(s) 20, 128, 146, 161, 185, 224, 239, 322
BseBI CCWGG 4 cut(s) 21, 162, 240, 386
BseGI GGATG 3 cut(s) 87, 115, 211
BseLI CCNNNNNNNGG 8 cut(s) 20, 128, 146, 161, 185, 224, 239, 322
BseRI GAGGAG 5 cut(s) 51, 255, 258, 261, 264
BseXI GCAGC 4 cut(s) 352, 362, 365, 386
BsgI GTGCAG 1 cut(s) 351
BsiSI CCGG 4 cut(s) 129, 147, 186, 225
BslI CCNNNNNNNGG 8 cut(s) 20, 128, 146, 161, 185, 224, 239, 322
BspLI GGNNCC 1 cut(s) 151
BssSI CACGAG 1 cut(s) 394
Bst2BI CACGAG 1 cut(s) 394
Bst2UI CCWGG 4 cut(s) 21, 162, 240, 386
Bst4CI ACNGT 1 cut(s) 291
BstENI CCTNNNNNAGG 1 cut(s) 159
BstF5I GGATG 3 cut(s) 87, 115, 211
BstHHI GCGC 1 cut(s) 58
BstMWI GCNNNNNNNGC 3 cut(s) 64, 97, 249
BstNI CCWGG 4 cut(s) 21, 162, 240, 386
BstSCI CCNGG 8 cut(s) 19, 127, 145, 160, 184, 223, 238, 384
BstV1I GCAGC 4 cut(s) 352, 362, 365, 386
BtsCI GGATG 3 cut(s) 87, 115, 211
CaiI CAGNNNCTG 1 cut(s) 357
CfoI GCGC 1 cut(s) 58
Cfr13I GGNCC 4 cut(s) 131, 149, 188, 227
CpoI CGGWCCG 1 cut(s) 188
CspI CGGWCCG 1 cut(s) 188
CviAII CATG 1 cut(s) 345
CviJI RGCY 4 cut(s) 243, 252, 357, 365
CviKI_1 RGCY 4 cut(s) 243, 252, 357, 365
EciI GGCGGA 4 cut(s) 54, 111, 129, 168
Eco47I GGWCC 4 cut(s) 131, 149, 188, 227
EcoNI CCTNNNNNAGG 1 cut(s) 159
EcoRII CCWGG 4 cut(s) 19, 160, 238, 384
FaeI CATG 1 cut(s) 348
FaiI YATR 1 cut(s) 346
FatI CATG 1 cut(s) 344
FauI CCCGC 1 cut(s) 312
FblI GTMKAC 1 cut(s) 293
Fnu4HI GCNGC 5 cut(s) 98, 366, 376, 379, 400
FokI GGATG 3 cut(s) 94, 102, 198
Fsp4HI GCNGC 5 cut(s) 98, 366, 376, 379, 400
GlaI GCGC 1 cut(s) 57
GluI GCNGC 5 cut(s) 98, 366, 376, 379, 400
GsuI CTGGAG 1 cut(s) 42
HapII CCGG 4 cut(s) 129, 147, 186, 225
HhaI GCGC 1 cut(s) 58
Hin1II CATG 1 cut(s) 348
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HincII GTYRAC 1 cut(s) 294
HindII GTYRAC 1 cut(s) 294
HinfI GANTC 3 cut(s) 165, 295, 392
HpaII CCGG 4 cut(s) 129, 147, 186, 225
Hpy166II GTNNAC 3 cut(s) 134, 294, 391
Hpy188I TCNGA 1 cut(s) 353
Hpy8I GTNNAC 3 cut(s) 134, 294, 391
Hpy99I CGWCG 2 cut(s) 295, 321
HpyCH4III ACNGT 1 cut(s) 291
HpyCH4V TGCA 1 cut(s) 368
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 97, 249
Hsp92II CATG 1 cut(s) 348
HspAI GCGC 1 cut(s) 56
Lsp1109I GCAGC 4 cut(s) 352, 362, 365, 386
LweI GCATC 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 5
MboII GAAGA 1 cut(s) 338
MlyI GAGTC 2 cut(s) 289, 386
MseI TTAA 2 cut(s) 258, 406
MspI CCGG 4 cut(s) 129, 147, 186, 225
MspR9I CCNGG 8 cut(s) 21, 129, 147, 162, 186, 225, 240, 386
MvaI CCWGG 4 cut(s) 21, 162, 240, 386
MwoI GCNNNNNNNGC 3 cut(s) 64, 97, 249
NciI CCSGG 4 cut(s) 129, 147, 186, 225
NlaIII CATG 1 cut(s) 348
NlaIV GGNNCC 1 cut(s) 151
PfeI GAWTC 1 cut(s) 165
PfoI TCCNGGA 4 cut(s) 19, 145, 184, 223
PkrI GCNGC 5 cut(s) 99, 367, 377, 380, 401
PleI GAGTC 2 cut(s) 289, 386
PpsI GAGTC 2 cut(s) 289, 386
Psp6I CCWGG 4 cut(s) 19, 160, 238, 384
PspGI CCWGG 4 cut(s) 19, 160, 238, 384
PspN4I GGNNCC 1 cut(s) 151
PspPI GGNCC 4 cut(s) 131, 149, 188, 227
PstNI CAGNNNCTG 1 cut(s) 357
Rsr2I CGGWCCG 1 cut(s) 188
RsrII CGGWCCG 1 cut(s) 188
SalI GTCGAC 1 cut(s) 292
SaqAI TTAA 2 cut(s) 258, 406
SatI GCNGC 5 cut(s) 98, 366, 376, 379, 400
Sau96I GGNCC 4 cut(s) 131, 149, 188, 227
SchI GAGTC 2 cut(s) 289, 386
ScrFI CCNGG 8 cut(s) 21, 129, 147, 162, 186, 225, 240, 386
SetI ASST 5 cut(s) 31, 43, 139, 223, 241
SfaNI GCATC 1 cut(s) 72
SinI GGWCC 4 cut(s) 131, 149, 188, 227
StyD4I CCNGG 8 cut(s) 19, 127, 145, 160, 184, 223, 238, 384
TaaI ACNGT 1 cut(s) 291
TaqI TCGA 2 cut(s) 72, 293
TauI GCSGC 1 cut(s) 100
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 2 cut(s) 258, 406
Tru9I TTAA 2 cut(s) 258, 406
TseI GCWGC 4 cut(s) 365, 375, 378, 399
TspDTI ATGAA 1 cut(s) 333
VpaK11BI GGWCC 4 cut(s) 131, 149, 188, 227
XagI CCTNNNNNAGG 1 cut(s) 159
XmiI GTMKAC 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.