RchiOBHm_Chr4g0429321

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0017650
Physical Location & Seq
Reverse (-)
54117366 .. 54118811
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39814

Sequence Viewer

Length: 396 bp
ATGAGTTACCGCCCTATTCCTGGAGAACCTCCACCGCCACCTCCACCAGAGTTTGCGCCTCCTCCGCCACTCGACTTTGGGATGCCACCGCCGCCACCAGAACACCCTCATCCTCCGCCTCCCGGTCCACCTCCGCCTCCCGGACCCCCTTCACCAGGATTCCCTTATCCTCCGCCTCCCGGACCCCCTCCACCAGAGTTCCCTCATCCTCCACCTCCAGGACCACCGCCACCTGGCTATCAGGGCTACTTTAATCCTCCTCCACCACCACCACCACCGTCGACTCTACCCCCGCCCCAACCCCCTCGGCAGGAAGACGATGACTGCCTTTCATGTTTCAGAGGCTGTTTGGCTGCACTTTGCTGCTGCTTCCTGGTGGACTCGTGCTGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

13.77

Weight (kDa)

4.44

Isoelectric Point (pI)

108.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 97 - 130 6.5e-07 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017650)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g23050
malus_domestica MD12G1127700.v1.1 MD16G1127000.v1.1
pyrus_communis pycom16g10780
rosa_chinensis RchiOBHm_Chr4g0429321
rosa_laevigata RLG00000007081
rosa_roxburghii Rroxscaffold_5G00370930
rosa_samantha Rh4AG290700 Rh4BG296500 Rh4CG312200 Rh4DG293600
rosa_wichuraiana Rw4G025170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 281
AfiI CCNNNNNNNGG 8 cut(s) 20, 122, 140, 155, 179, 218, 233, 310
AjnI CCWGG 5 cut(s) 19, 154, 217, 232, 372
AlwNI CAGNNNCTG 1 cut(s) 345
ApeKI GCWGC 4 cut(s) 353, 363, 366, 387
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 4 cut(s) 125, 143, 182, 221
AsuC2I CCSGG 3 cut(s) 123, 141, 180
AsuHPI GGTGA 1 cut(s) 144
AvaII GGWCC 4 cut(s) 125, 143, 182, 221
BauI CACGAG 1 cut(s) 382
BbsI GAAGAC 1 cut(s) 321
BbvI GCAGC 4 cut(s) 340, 350, 353, 374
BciT130I CCWGG 5 cut(s) 21, 156, 219, 234, 374
BcnI CCSGG 3 cut(s) 123, 141, 180
BisI GCNGC 5 cut(s) 92, 354, 364, 367, 388
BlsI GCNGC 5 cut(s) 93, 355, 365, 368, 389
Bme1390I CCNGG 8 cut(s) 21, 123, 141, 156, 180, 219, 234, 374
Bme18I GGWCC 4 cut(s) 125, 143, 182, 221
BmgT120I GGNCC 4 cut(s) 125, 143, 182, 221
BmiI GGNNCC 2 cut(s) 145, 184
BmrFI CCNGG 8 cut(s) 21, 123, 141, 156, 180, 219, 234, 374
BmsI GCATC 1 cut(s) 72
BpiI GAAGAC 1 cut(s) 321
BpmI CTGGAG 2 cut(s) 42, 201
BpuMI CCSGG 3 cut(s) 123, 141, 180
BsaJI CCNNGG 1 cut(s) 305
Bsc4I CCNNNNNNNGG 8 cut(s) 20, 122, 140, 155, 179, 218, 233, 310
BseBI CCWGG 5 cut(s) 21, 156, 219, 234, 374
BseDI CCNNGG 1 cut(s) 305
BseGI GGATG 3 cut(s) 87, 109, 205
BseLI CCNNNNNNNGG 8 cut(s) 20, 122, 140, 155, 179, 218, 233, 310
BseRI GAGGAG 2 cut(s) 51, 249
BseXI GCAGC 4 cut(s) 340, 350, 353, 374
BsgI GTGCAG 1 cut(s) 339
BsiSI CCGG 3 cut(s) 123, 141, 180
BslI CCNNNNNNNGG 8 cut(s) 20, 122, 140, 155, 179, 218, 233, 310
BspLI GGNNCC 2 cut(s) 145, 184
BssECI CCNNGG 1 cut(s) 305
BssSI CACGAG 1 cut(s) 382
Bst2BI CACGAG 1 cut(s) 382
Bst2UI CCWGG 5 cut(s) 21, 156, 219, 234, 374
Bst4CI ACNGT 1 cut(s) 279
BstENI CCTNNNNNAGG 1 cut(s) 153
BstF5I GGATG 3 cut(s) 87, 109, 205
BstHHI GCGC 1 cut(s) 58
BstMWI GCNNNNNNNGC 3 cut(s) 64, 91, 243
BstNI CCWGG 5 cut(s) 21, 156, 219, 234, 374
BstSCI CCNGG 8 cut(s) 19, 121, 139, 154, 178, 217, 232, 372
BstV1I GCAGC 4 cut(s) 340, 350, 353, 374
BstV2I GAAGAC 1 cut(s) 321
BtsCI GGATG 3 cut(s) 87, 109, 205
CaiI CAGNNNCTG 1 cut(s) 345
CfoI GCGC 1 cut(s) 58
Cfr13I GGNCC 4 cut(s) 125, 143, 182, 221
CviAII CATG 1 cut(s) 333
CviJI RGCY 4 cut(s) 237, 246, 345, 353
CviKI_1 RGCY 4 cut(s) 237, 246, 345, 353
EciI GGCGGA 4 cut(s) 54, 105, 123, 162
Eco47I GGWCC 4 cut(s) 125, 143, 182, 221
EcoNI CCTNNNNNAGG 1 cut(s) 153
EcoRII CCWGG 5 cut(s) 19, 154, 217, 232, 372
FaeI CATG 1 cut(s) 336
FaiI YATR 1 cut(s) 334
FatI CATG 1 cut(s) 332
FauI CCCGC 1 cut(s) 300
FblI GTMKAC 1 cut(s) 281
Fnu4HI GCNGC 5 cut(s) 92, 354, 364, 367, 388
FokI GGATG 3 cut(s) 94, 96, 192
Fsp4HI GCNGC 5 cut(s) 92, 354, 364, 367, 388
GlaI GCGC 1 cut(s) 57
GluI GCNGC 5 cut(s) 92, 354, 364, 367, 388
GsuI CTGGAG 2 cut(s) 42, 201
HapII CCGG 3 cut(s) 123, 141, 180
HhaI GCGC 1 cut(s) 58
Hin1II CATG 1 cut(s) 336
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HincII GTYRAC 1 cut(s) 282
HindII GTYRAC 1 cut(s) 282
HinfI GANTC 3 cut(s) 159, 283, 380
HpaII CCGG 3 cut(s) 123, 141, 180
HphI GGTGA 1 cut(s) 144
Hpy166II GTNNAC 3 cut(s) 128, 282, 379
Hpy188I TCNGA 1 cut(s) 341
Hpy8I GTNNAC 3 cut(s) 128, 282, 379
Hpy99I CGWCG 1 cut(s) 283
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 1 cut(s) 279
HpyCH4V TGCA 1 cut(s) 356
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 91, 243
Hsp92II CATG 1 cut(s) 336
HspAI GCGC 1 cut(s) 56
Lsp1109I GCAGC 4 cut(s) 340, 350, 353, 374
LweI GCATC 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 5
MboII GAAGA 1 cut(s) 326
MlyI GAGTC 2 cut(s) 277, 374
MseI TTAA 2 cut(s) 252, 394
MspI CCGG 3 cut(s) 123, 141, 180
MspR9I CCNGG 8 cut(s) 21, 123, 141, 156, 180, 219, 234, 374
MvaI CCWGG 5 cut(s) 21, 156, 219, 234, 374
MwoI GCNNNNNNNGC 3 cut(s) 64, 91, 243
NciI CCSGG 3 cut(s) 123, 141, 180
NlaIII CATG 1 cut(s) 336
NlaIV GGNNCC 2 cut(s) 145, 184
NmeAIII GCCGAG 1 cut(s) 286
PfeI GAWTC 1 cut(s) 159
PfoI TCCNGGA 4 cut(s) 19, 139, 178, 217
PkrI GCNGC 5 cut(s) 93, 355, 365, 368, 389
PleI GAGTC 2 cut(s) 277, 374
PpsI GAGTC 2 cut(s) 277, 374
Psp6I CCWGG 5 cut(s) 19, 154, 217, 232, 372
PspGI CCWGG 5 cut(s) 19, 154, 217, 232, 372
PspN4I GGNNCC 2 cut(s) 145, 184
PspPI GGNCC 4 cut(s) 125, 143, 182, 221
PstNI CAGNNNCTG 1 cut(s) 345
SalI GTCGAC 1 cut(s) 280
SaqAI TTAA 2 cut(s) 252, 394
SatI GCNGC 5 cut(s) 92, 354, 364, 367, 388
Sau96I GGNCC 4 cut(s) 125, 143, 182, 221
SchI GAGTC 2 cut(s) 277, 374
ScrFI CCNGG 8 cut(s) 21, 123, 141, 156, 180, 219, 234, 374
SetI ASST 5 cut(s) 31, 43, 133, 217, 235
SfaNI GCATC 1 cut(s) 72
SinI GGWCC 4 cut(s) 125, 143, 182, 221
StyD4I CCNGG 8 cut(s) 19, 121, 139, 154, 178, 217, 232, 372
TaaI ACNGT 1 cut(s) 279
TaqI TCGA 2 cut(s) 72, 281
TauI GCSGC 1 cut(s) 94
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 2 cut(s) 252, 394
Tru9I TTAA 2 cut(s) 252, 394
TseI GCWGC 4 cut(s) 353, 363, 366, 387
TspDTI ATGAA 1 cut(s) 321
VpaK11BI GGWCC 4 cut(s) 125, 143, 182, 221
XagI CCTNNNNNAGG 1 cut(s) 153
XmiI GTMKAC 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.