Rroxscaffold_5G00370930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0017650
Physical Location & Seq
Reverse (-)
52598922 .. 52599863
942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00370930.1

Sequence Viewer

Length: 399 bp
ATGAGTTACCGCCCTATTCCTGGAGAACCTCCACCGCCACCTCCACCAGAGTTCGCTCCTCCTCCGCCACTCGACTTTGGGATGCCACCGCCGCCACCAGAACACCCTCATCCTCCGCCTCCCGGTCCACCTCCGCCTCCCGGACCCCCTTCACCAGGATTCCCCTATCCTCCGCCTCCCGGACCCCCTCCACCAGAGTTCCCTCATCCTCCACCTCCCGGACCACCGCCACCTGGCTATCAGGGCTACTTTAATCCTCCTCCACCACCACCACCACCACCGTCGACTCTACCCCCGCCCCAACCCCCTCGGCAGGAAGATGATGACTGCCTTTCATGTTTCAGAGGCTGTTTGGCTGCACTTTGTTGCTGCTTCCTGGTGGACTCGTGCTGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

13.86

Weight (kDa)

4.44

Isoelectric Point (pI)

109.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 98 - 131 1.1e-06 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017650)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g23050
malus_domestica MD12G1127700.v1.1 MD16G1127000.v1.1
pyrus_communis pycom16g10780
rosa_chinensis RchiOBHm_Chr4g0429321
rosa_laevigata RLG00000007081
rosa_roxburghii Rroxscaffold_5G00370930
rosa_samantha Rh4AG290700 Rh4BG296500 Rh4CG312200 Rh4DG293600
rosa_wichuraiana Rw4G025170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 284
AfiI CCNNNNNNNGG 8 cut(s) 20, 122, 140, 155, 179, 218, 233, 313
AjnI CCWGG 4 cut(s) 19, 154, 232, 375
AlwNI CAGNNNCTG 1 cut(s) 348
ApeKI GCWGC 3 cut(s) 356, 369, 390
AspS9I GGNCC 4 cut(s) 125, 143, 182, 221
AsuC2I CCSGG 4 cut(s) 123, 141, 180, 219
AsuHPI GGTGA 1 cut(s) 144
AvaII GGWCC 4 cut(s) 125, 143, 182, 221
BauI CACGAG 1 cut(s) 385
BbvI GCAGC 3 cut(s) 343, 356, 377
BciT130I CCWGG 4 cut(s) 21, 156, 234, 377
BcnI CCSGG 4 cut(s) 123, 141, 180, 219
BisI GCNGC 4 cut(s) 92, 357, 370, 391
BlsI GCNGC 4 cut(s) 93, 358, 371, 392
Bme1390I CCNGG 8 cut(s) 21, 123, 141, 156, 180, 219, 234, 377
Bme18I GGWCC 4 cut(s) 125, 143, 182, 221
BmgT120I GGNCC 4 cut(s) 125, 143, 182, 221
BmiI GGNNCC 2 cut(s) 145, 184
BmrFI CCNGG 8 cut(s) 21, 123, 141, 156, 180, 219, 234, 377
BmsI GCATC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 42
BpuMI CCSGG 4 cut(s) 123, 141, 180, 219
BsaJI CCNNGG 1 cut(s) 308
Bsc4I CCNNNNNNNGG 8 cut(s) 20, 122, 140, 155, 179, 218, 233, 313
BseBI CCWGG 4 cut(s) 21, 156, 234, 377
BseDI CCNNGG 1 cut(s) 308
BseGI GGATG 3 cut(s) 87, 109, 205
BseLI CCNNNNNNNGG 8 cut(s) 20, 122, 140, 155, 179, 218, 233, 313
BseRI GAGGAG 3 cut(s) 48, 51, 249
BseXI GCAGC 3 cut(s) 343, 356, 377
BsgI GTGCAG 1 cut(s) 342
BsiSI CCGG 4 cut(s) 123, 141, 180, 219
BslI CCNNNNNNNGG 8 cut(s) 20, 122, 140, 155, 179, 218, 233, 313
BspLI GGNNCC 2 cut(s) 145, 184
BssECI CCNNGG 1 cut(s) 308
BssSI CACGAG 1 cut(s) 385
Bst2BI CACGAG 1 cut(s) 385
Bst2UI CCWGG 4 cut(s) 21, 156, 234, 377
Bst4CI ACNGT 1 cut(s) 282
BstENI CCTNNNNNAGG 1 cut(s) 153
BstF5I GGATG 3 cut(s) 87, 109, 205
BstMWI GCNNNNNNNGC 2 cut(s) 91, 243
BstNI CCWGG 4 cut(s) 21, 156, 234, 377
BstSCI CCNGG 8 cut(s) 19, 121, 139, 154, 178, 217, 232, 375
BstV1I GCAGC 3 cut(s) 343, 356, 377
BtsCI GGATG 3 cut(s) 87, 109, 205
CaiI CAGNNNCTG 1 cut(s) 348
Cfr13I GGNCC 4 cut(s) 125, 143, 182, 221
CviAII CATG 1 cut(s) 336
CviJI RGCY 4 cut(s) 237, 246, 348, 356
CviKI_1 RGCY 4 cut(s) 237, 246, 348, 356
EciI GGCGGA 4 cut(s) 54, 105, 123, 162
Eco47I GGWCC 4 cut(s) 125, 143, 182, 221
EcoNI CCTNNNNNAGG 1 cut(s) 153
EcoRII CCWGG 4 cut(s) 19, 154, 232, 375
FaeI CATG 1 cut(s) 339
FaiI YATR 1 cut(s) 337
FatI CATG 1 cut(s) 335
FauI CCCGC 1 cut(s) 303
FblI GTMKAC 1 cut(s) 284
Fnu4HI GCNGC 4 cut(s) 92, 357, 370, 391
FokI GGATG 3 cut(s) 94, 96, 192
Fsp4HI GCNGC 4 cut(s) 92, 357, 370, 391
GluI GCNGC 4 cut(s) 92, 357, 370, 391
GsuI CTGGAG 1 cut(s) 42
HapII CCGG 4 cut(s) 123, 141, 180, 219
Hin1II CATG 1 cut(s) 339
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HinfI GANTC 3 cut(s) 159, 286, 383
HpaII CCGG 4 cut(s) 123, 141, 180, 219
HphI GGTGA 1 cut(s) 144
Hpy166II GTNNAC 3 cut(s) 128, 285, 382
Hpy188I TCNGA 1 cut(s) 344
Hpy8I GTNNAC 3 cut(s) 128, 285, 382
Hpy99I CGWCG 1 cut(s) 286
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 1 cut(s) 282
HpyCH4V TGCA 1 cut(s) 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 243
Hsp92II CATG 1 cut(s) 339
LmnI GCTCC 1 cut(s) 61
Lsp1109I GCAGC 3 cut(s) 343, 356, 377
LweI GCATC 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 5
MboII GAAGA 1 cut(s) 329
MlyI GAGTC 2 cut(s) 280, 377
MseI TTAA 2 cut(s) 252, 397
MspI CCGG 4 cut(s) 123, 141, 180, 219
MspR9I CCNGG 8 cut(s) 21, 123, 141, 156, 180, 219, 234, 377
MvaI CCWGG 4 cut(s) 21, 156, 234, 377
MwoI GCNNNNNNNGC 2 cut(s) 91, 243
NciI CCSGG 4 cut(s) 123, 141, 180, 219
NlaIII CATG 1 cut(s) 339
NlaIV GGNNCC 2 cut(s) 145, 184
NmeAIII GCCGAG 1 cut(s) 289
PfeI GAWTC 1 cut(s) 159
PfoI TCCNGGA 4 cut(s) 19, 139, 178, 217
PkrI GCNGC 4 cut(s) 93, 358, 371, 392
PleI GAGTC 2 cut(s) 280, 377
PpsI GAGTC 2 cut(s) 280, 377
Psp6I CCWGG 4 cut(s) 19, 154, 232, 375
PspGI CCWGG 4 cut(s) 19, 154, 232, 375
PspN4I GGNNCC 2 cut(s) 145, 184
PspPI GGNCC 4 cut(s) 125, 143, 182, 221
PstNI CAGNNNCTG 1 cut(s) 348
SalI GTCGAC 1 cut(s) 283
SaqAI TTAA 2 cut(s) 252, 397
SatI GCNGC 4 cut(s) 92, 357, 370, 391
Sau96I GGNCC 4 cut(s) 125, 143, 182, 221
SchI GAGTC 2 cut(s) 280, 377
ScrFI CCNGG 8 cut(s) 21, 123, 141, 156, 180, 219, 234, 377
SetI ASST 5 cut(s) 31, 43, 133, 217, 235
SfaNI GCATC 1 cut(s) 72
SinI GGWCC 4 cut(s) 125, 143, 182, 221
StyD4I CCNGG 8 cut(s) 19, 121, 139, 154, 178, 217, 232, 375
TaaI ACNGT 1 cut(s) 282
TaqI TCGA 2 cut(s) 72, 284
TauI GCSGC 1 cut(s) 94
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 2 cut(s) 252, 397
Tru9I TTAA 2 cut(s) 252, 397
TseI GCWGC 3 cut(s) 356, 369, 390
TspDTI ATGAA 1 cut(s) 324
VpaK11BI GGWCC 4 cut(s) 125, 143, 182, 221
XagI CCTNNNNNAGG 1 cut(s) 153
XmiI GTMKAC 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.