Rh4DG293600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0017650
Physical Location & Seq
Reverse (-)
51509323 .. 51510292
970 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG293600.1

Sequence Viewer

Length: 369 bp
ATGAGTTACCGCCCTATTCCTGGAGAACCTCCACCGCCACCTCCACCAGAGTTTGCGCCTCCTCCGCCACTCGACTTTGGGATGCCACCGCCACCGCCACCGCCGCCACCAGAACACCCTCATCCTCCGCCTCCCAGTCCACCTCCGCCTCCCGGACCCCCTCCACCAGAGTTCCCTCATCCTCCACCTCCCGGACCACCGCCACCTGGCTATCAGGGCTACTTTAATCCTCCTCCGCCACCACCACCTCCGTCGACTCTACCCCCGCCCCAACCCCCTCGGCAGGAAGACGATGACTGCCTTTCATGTTTCAGAGGCTGTTTGGCTGCACTTTGCTGCTGCTTCCTGGTGGACTCGTGCTGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

12.9

Weight (kDa)

4.44

Isoelectric Point (pI)

113.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 88 - 121 5.7e-08 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017650)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g23050
malus_domestica MD12G1127700.v1.1 MD16G1127000.v1.1
pyrus_communis pycom16g10780
rosa_chinensis RchiOBHm_Chr4g0429321
rosa_laevigata RLG00000007081
rosa_roxburghii Rroxscaffold_5G00370930
rosa_samantha Rh4AG290700 Rh4BG296500 Rh4CG312200 Rh4DG293600
rosa_wichuraiana Rw4G025170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 254
AfiI CCNNNNNNNGG 5 cut(s) 20, 152, 191, 206, 283
AjnI CCWGG 3 cut(s) 19, 205, 345
AlwNI CAGNNNCTG 1 cut(s) 318
ApeKI GCWGC 4 cut(s) 326, 336, 339, 360
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 2 cut(s) 155, 194
AsuC2I CCSGG 2 cut(s) 153, 192
AvaII GGWCC 2 cut(s) 155, 194
BauI CACGAG 1 cut(s) 355
BbsI GAAGAC 1 cut(s) 294
BbvI GCAGC 4 cut(s) 313, 323, 326, 347
BciT130I CCWGG 3 cut(s) 21, 207, 347
BcnI CCSGG 2 cut(s) 153, 192
BisI GCNGC 5 cut(s) 104, 327, 337, 340, 361
BlsI GCNGC 5 cut(s) 105, 328, 338, 341, 362
Bme1390I CCNGG 5 cut(s) 21, 153, 192, 207, 347
Bme18I GGWCC 2 cut(s) 155, 194
BmgT120I GGNCC 2 cut(s) 155, 194
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 5 cut(s) 21, 153, 192, 207, 347
BmrI ACTGGG 1 cut(s) 129
BmsI GCATC 1 cut(s) 72
BmuI ACTGGG 1 cut(s) 129
BpiI GAAGAC 1 cut(s) 294
BpmI CTGGAG 1 cut(s) 42
BpuMI CCSGG 2 cut(s) 153, 192
BsaJI CCNNGG 1 cut(s) 278
Bsc4I CCNNNNNNNGG 5 cut(s) 20, 152, 191, 206, 283
Bse1I ACTGG 1 cut(s) 135
BseBI CCWGG 3 cut(s) 21, 207, 347
BseDI CCNNGG 1 cut(s) 278
BseGI GGATG 3 cut(s) 87, 121, 178
BseLI CCNNNNNNNGG 5 cut(s) 20, 152, 191, 206, 283
BseNI ACTGG 1 cut(s) 135
BseRI GAGGAG 2 cut(s) 51, 222
BseXI GCAGC 4 cut(s) 313, 323, 326, 347
BsgI GTGCAG 1 cut(s) 312
BsiSI CCGG 2 cut(s) 153, 192
BslI CCNNNNNNNGG 5 cut(s) 20, 152, 191, 206, 283
BspLI GGNNCC 1 cut(s) 157
BsrI ACTGG 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 278
BssSI CACGAG 1 cut(s) 355
Bst2BI CACGAG 1 cut(s) 355
Bst2UI CCWGG 3 cut(s) 21, 207, 347
BstF5I GGATG 3 cut(s) 87, 121, 178
BstHHI GCGC 1 cut(s) 58
BstMWI GCNNNNNNNGC 3 cut(s) 64, 103, 216
BstNI CCWGG 3 cut(s) 21, 207, 347
BstSCI CCNGG 5 cut(s) 19, 151, 190, 205, 345
BstV1I GCAGC 4 cut(s) 313, 323, 326, 347
BstV2I GAAGAC 1 cut(s) 294
BtsCI GGATG 3 cut(s) 87, 121, 178
CaiI CAGNNNCTG 1 cut(s) 318
CfoI GCGC 1 cut(s) 58
Cfr13I GGNCC 2 cut(s) 155, 194
CviAII CATG 1 cut(s) 306
CviJI RGCY 4 cut(s) 210, 219, 318, 326
CviKI_1 RGCY 4 cut(s) 210, 219, 318, 326
EciI GGCGGA 4 cut(s) 54, 117, 135, 225
Eco47I GGWCC 2 cut(s) 155, 194
EcoRII CCWGG 3 cut(s) 19, 205, 345
FaeI CATG 1 cut(s) 309
FaiI YATR 1 cut(s) 307
FatI CATG 1 cut(s) 305
FauI CCCGC 1 cut(s) 273
FblI GTMKAC 1 cut(s) 254
Fnu4HI GCNGC 5 cut(s) 104, 327, 337, 340, 361
FokI GGATG 3 cut(s) 94, 108, 165
Fsp4HI GCNGC 5 cut(s) 104, 327, 337, 340, 361
GlaI GCGC 1 cut(s) 57
GluI GCNGC 5 cut(s) 104, 327, 337, 340, 361
GsuI CTGGAG 1 cut(s) 42
HapII CCGG 2 cut(s) 153, 192
HhaI GCGC 1 cut(s) 58
Hin1II CATG 1 cut(s) 309
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HinfI GANTC 2 cut(s) 256, 353
HpaII CCGG 2 cut(s) 153, 192
Hpy166II GTNNAC 3 cut(s) 140, 255, 352
Hpy188I TCNGA 1 cut(s) 314
Hpy8I GTNNAC 3 cut(s) 140, 255, 352
Hpy99I CGWCG 1 cut(s) 256
HpyCH4V TGCA 1 cut(s) 329
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 103, 216
Hsp92II CATG 1 cut(s) 309
HspAI GCGC 1 cut(s) 56
Lsp1109I GCAGC 4 cut(s) 313, 323, 326, 347
LweI GCATC 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 5
MboII GAAGA 1 cut(s) 299
MlyI GAGTC 2 cut(s) 250, 347
MseI TTAA 2 cut(s) 225, 367
MspI CCGG 2 cut(s) 153, 192
MspR9I CCNGG 5 cut(s) 21, 153, 192, 207, 347
MvaI CCWGG 3 cut(s) 21, 207, 347
MwoI GCNNNNNNNGC 3 cut(s) 64, 103, 216
NciI CCSGG 2 cut(s) 153, 192
NlaIII CATG 1 cut(s) 309
NlaIV GGNNCC 1 cut(s) 157
NmeAIII GCCGAG 1 cut(s) 259
PfoI TCCNGGA 3 cut(s) 19, 151, 190
PkrI GCNGC 5 cut(s) 105, 328, 338, 341, 362
PleI GAGTC 2 cut(s) 250, 347
PpsI GAGTC 2 cut(s) 250, 347
Psp6I CCWGG 3 cut(s) 19, 205, 345
PspGI CCWGG 3 cut(s) 19, 205, 345
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 2 cut(s) 155, 194
PstNI CAGNNNCTG 1 cut(s) 318
SalI GTCGAC 1 cut(s) 253
SaqAI TTAA 2 cut(s) 225, 367
SatI GCNGC 5 cut(s) 104, 327, 337, 340, 361
Sau96I GGNCC 2 cut(s) 155, 194
SchI GAGTC 2 cut(s) 250, 347
ScrFI CCNGG 5 cut(s) 21, 153, 192, 207, 347
SetI ASST 6 cut(s) 31, 43, 145, 190, 208, 250
SfaNI GCATC 1 cut(s) 72
SinI GGWCC 2 cut(s) 155, 194
StyD4I CCNGG 5 cut(s) 19, 151, 190, 205, 345
TaqI TCGA 2 cut(s) 72, 254
TauI GCSGC 1 cut(s) 106
Tru1I TTAA 2 cut(s) 225, 367
Tru9I TTAA 2 cut(s) 225, 367
TseI GCWGC 4 cut(s) 326, 336, 339, 360
TspDTI ATGAA 1 cut(s) 294
TspGWI ACGGA 1 cut(s) 240
VpaK11BI GGWCC 2 cut(s) 155, 194
XmiI GTMKAC 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.