FvH4_4g23091

Somatic embryogenesis receptor kinase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016827
Physical Location & Seq
Forward (+)
25670853 .. 25672309
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23091.t1

Sequence Viewer

Length: 708 bp
ATGCATTCTCGAGCTTTGCTTTGTTTTCTGTTTGTAGCAGCCATTGCATCTGTGGACTGCAACTCGGAAGGGGATGCTCTTTATTTCTGGAAAACCAAATTGGTCGACCCTAACAATGTTCTTCAGAGCTGGGATCCGACTTTGGCCAATCCATGCACCTGGTTTCACGTTACCTGCGACAGTCAAAACAGCGTTGCAAGACTGGACCTTGGCAATGCTGGACTTTCAGGACCTCTTGTCGCTGAGCTCGGAATCTTGACTAACCTGCATGTAAGGCCATCCTTTCTATCTATGGAGTTGTATGAAAACAAATTCTTTGGACCTATTCCATCCGCAATTGGTCACTTGAGTAAACTAGTCAGCTTGGACTTGTACAAGAATAAACTCTCCGGAACAATTCCACACACTTTGGGACACTTGAGTTCCTTGAGGTTTTTGAGGGTATTCCGCAATAATCTAACAGGAGCTATTCCTTCTTCTCTTGGAAATCTGACAAGTCTTGTACTTCTGCAATTAAACAGAAACAAGCTCACTGGTGTGCTACCGGTGGAGGTCATTGGACTCGTTCGTTTTGGCAAATTATTGATTTTGGACGTCTCAAGCAATCTGTTGGTAGGGACCGTACACCGCATCAATTCAACAGGTTTTGTAGTTACGAAAATAGTACAGGATCCAAGAGCTCAGAAACCAGTAGAAGAAGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

236

Amino Acids

25.74

Weight (kDa)

8.38

Isoelectric Point (pI)

31.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 21 - 60 2.9e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 106 - 174 6.4e-08 Leucine-rich repeat region
LRR_8 PF13855 110 - 153 1.4e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016827)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g23091 FvH4_4g23092 FvH4_4g23092
malus_domestica MD13G1125600.v1.1
pyrus_communis pycom13g10960
rosa_chinensis RchiOBHm_Chr4g0429381
rosa_laevigata RLG00000007075
rosa_multiflora Rmu_sc0003708.1_g000022
rosa_roxburghii Rroxscaffold_5G00371020
rosa_rugosa Rorug04G0235400
rosa_samantha Rh4AG291300 Rh4CG312600 Rh4DG294100
rosa_wichuraiana Rw4G025220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 597
Acc36I ACCTGC 2 cut(s) 182, 273
AccI GTMKAC 1 cut(s) 105
AccIII TCCGGA 1 cut(s) 389
AciI CCGC 3 cut(s) 333, 448, 628
AclWI GGATC 4 cut(s) 128, 141, 665, 678
AcoI YGGCCR 1 cut(s) 144
AcsI RAATTY 1 cut(s) 311
AcuI CTGAAG 1 cut(s) 107
AcyI GRCGYC 1 cut(s) 594
AfaI GTAC 4 cut(s) 374, 504, 624, 666
AgeI ACCGGT 1 cut(s) 544
AgsI TTSAA 1 cut(s) 639
AhdI GACNNNNNGTC 1 cut(s) 236
AhlI ACTAGT 1 cut(s) 355
AjnI CCWGG 1 cut(s) 158
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AleI CACNNNNGTG 1 cut(s) 536
AluBI AGCT 7 cut(s) 14, 129, 247, 363, 467, 529, 680
AluI AGCT 7 cut(s) 14, 129, 247, 363, 467, 529, 680
Alw21I GWGCWC 2 cut(s) 249, 682
Alw26I GTCTC 1 cut(s) 601
AlwI GGATC 4 cut(s) 128, 141, 665, 678
Ama87I CYCGRG 1 cut(s) 9
Aor13HI TCCGGA 1 cut(s) 389
AoxI GGCC 2 cut(s) 144, 275
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 311
AsiGI ACCGGT 1 cut(s) 544
AspS9I GGNCC 4 cut(s) 205, 230, 320, 618
AvaI CYCGRG 1 cut(s) 9
AvaII GGWCC 4 cut(s) 205, 230, 320, 618
BalI TGGCCA 1 cut(s) 146
BamHI GGATCC 2 cut(s) 133, 670
BanII GRGCYC 2 cut(s) 249, 682
Bbv12I GWGCWC 2 cut(s) 249, 682
BbvI GCAGC 1 cut(s) 50
BccI CCATC 2 cut(s) 286, 337
BciT130I CCWGG 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 601
BcuI ACTAGT 1 cut(s) 355
BfaI CTAG 1 cut(s) 356
BfuAI ACCTGC 2 cut(s) 182, 273
BisI GCNGC 1 cut(s) 39
BlpI GCTNAGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 1 cut(s) 160
Bme18I GGWCC 4 cut(s) 205, 230, 320, 618
BmeRI GACNNNNNGTC 1 cut(s) 236
BmeT110I CYCGRG 1 cut(s) 9
BmgT120I GGNCC 4 cut(s) 205, 230, 320, 618
BmiI GGNNCC 3 cut(s) 135, 619, 672
BmrFI CCNGG 1 cut(s) 160
BmsI GCATC 3 cut(s) 56, 64, 639
Bpu1102I GCTNAGC 1 cut(s) 243
BpuEI CTTGAG 4 cut(s) 367, 439, 448, 583
BsaHI GRCGYC 1 cut(s) 594
BsaJI CCNNGG 1 cut(s) 208
BsaWI WCCGGW 2 cut(s) 389, 544
Bse118I RCCGGY 1 cut(s) 544
Bse1I ACTGG 3 cut(s) 207, 538, 689
Bse3DI GCAATG 2 cut(s) 42, 220
BseAI TCCGGA 1 cut(s) 389
BseBI CCWGG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 208
BseGI GGATG 3 cut(s) 79, 278, 329
BseMI GCAATG 2 cut(s) 42, 220
BseMII CTCAG 2 cut(s) 234, 695
BseNI ACTGG 3 cut(s) 207, 538, 689
BseXI GCAGC 1 cut(s) 50
BseYI CCCAGC 1 cut(s) 129
BshFI GGCC 2 cut(s) 146, 277
BshTI ACCGGT 1 cut(s) 544
BsiHKAI GWGCWC 2 cut(s) 249, 682
BsiHKCI CYCGRG 1 cut(s) 9
BsiSI CCGG 2 cut(s) 390, 545
BslFI GGGAC 2 cut(s) 426, 631
BsmAI GTCTC 1 cut(s) 601
BsmBI CGTCTC 1 cut(s) 601
BsmFI GGGAC 2 cut(s) 426, 631
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 2 cut(s) 146, 277
BsoBI CYCGRG 1 cut(s) 9
Bsp1286I GDGCHC 2 cut(s) 249, 682
Bsp13I TCCGGA 1 cut(s) 389
Bsp1407I TGTACA 1 cut(s) 372
Bsp143I GATC 2 cut(s) 133, 670
Bsp1720I GCTNAGC 1 cut(s) 243
BspACI CCGC 3 cut(s) 333, 448, 628
BspANI GGCC 2 cut(s) 146, 277
BspCNI CTCAG 2 cut(s) 235, 694
BspEI TCCGGA 1 cut(s) 389
BspLI GGNNCC 3 cut(s) 135, 619, 672
BspMI ACCTGC 2 cut(s) 182, 273
BspPI GGATC 4 cut(s) 128, 141, 665, 678
BsrDI GCAATG 2 cut(s) 42, 220
BsrFI RCCGGY 1 cut(s) 544
BsrGI TGTACA 1 cut(s) 372
BsrI ACTGG 3 cut(s) 207, 538, 689
BssAI RCCGGY 1 cut(s) 544
BssECI CCNNGG 1 cut(s) 208
BssMI GATC 2 cut(s) 133, 670
BssNI GRCGYC 1 cut(s) 594
BssT1I CCWWGG 1 cut(s) 208
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 2 cut(s) 182, 622
BstACI GRCGYC 1 cut(s) 594
BstAPI GCANNNNNTGC 1 cut(s) 44
BstAUI TGTACA 1 cut(s) 372
BstDEI CTNAG 2 cut(s) 243, 681
BstF5I GGATG 3 cut(s) 79, 278, 329
BstKTI GATC 2 cut(s) 136, 673
BstMAI GTCTC 1 cut(s) 601
BstMBI GATC 2 cut(s) 133, 670
BstMWI GCNNNNNNNGC 2 cut(s) 44, 274
BstNI CCWGG 1 cut(s) 160
BstNSI RCATGY 1 cut(s) 272
BstSCI CCNGG 1 cut(s) 158
BstV1I GCAGC 1 cut(s) 50
BstX2I RGATCY 2 cut(s) 133, 670
BstXI CCANNNNNNTGG 1 cut(s) 159
BstYI RGATCY 2 cut(s) 133, 670
BsuRI GGCC 2 cut(s) 146, 277
BtsCI GGATG 3 cut(s) 79, 278, 329
BtsIMutI CAGTG 1 cut(s) 531
BveI ACCTGC 2 cut(s) 182, 273
Cfr10I RCCGGY 1 cut(s) 544
Cfr13I GGNCC 4 cut(s) 205, 230, 320, 618
CsiI ACCWGGT 1 cut(s) 158
Csp6I GTAC 4 cut(s) 373, 503, 623, 665
CspAI ACCGGT 1 cut(s) 544
CspCI CAANNNNNGTGG 2 cut(s) 390, 425
CviAII CATG 2 cut(s) 153, 269
CviQI GTAC 4 cut(s) 373, 503, 623, 665
DdeI CTNAG 2 cut(s) 243, 681
DpnI GATC 2 cut(s) 135, 672
DpnII GATC 2 cut(s) 133, 670
DriI GACNNNNNGTC 1 cut(s) 236
EaeI YGGCCR 1 cut(s) 144
Eam1105I GACNNNNNGTC 1 cut(s) 236
Ecl136II GAGCTC 2 cut(s) 247, 680
Eco130I CCWWGG 1 cut(s) 208
Eco24I GRGCYC 2 cut(s) 249, 682
Eco47I GGWCC 4 cut(s) 205, 230, 320, 618
Eco53kI GAGCTC 2 cut(s) 247, 680
Eco57I CTGAAG 1 cut(s) 107
Eco88I CYCGRG 1 cut(s) 9
EcoICRI GAGCTC 2 cut(s) 247, 680
EcoO109I RGGNCCY 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 158
EcoT14I CCWWGG 1 cut(s) 208
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 249, 682
ErhI CCWWGG 1 cut(s) 208
Esp3I CGTCTC 1 cut(s) 601
FaeI CATG 2 cut(s) 156, 272
FaiI YATR 4 cut(s) 154, 270, 293, 303
FaqI GGGAC 2 cut(s) 426, 631
FatI CATG 2 cut(s) 152, 268
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 3 cut(s) 86, 265, 316
FriOI GRGCYC 2 cut(s) 249, 682
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 1 cut(s) 356
GluI GCNGC 1 cut(s) 39
GsaI CCCAGC 1 cut(s) 133
HaeIII GGCC 2 cut(s) 146, 277
HapII CCGG 2 cut(s) 390, 545
Hin1I GRCGYC 1 cut(s) 594
Hin1II CATG 2 cut(s) 156, 272
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 2 cut(s) 252, 561
HpaII CCGG 2 cut(s) 390, 545
Hpy166II GTNNAC 4 cut(s) 55, 106, 353, 625
Hpy188I TCNGA 6 cut(s) 67, 126, 138, 251, 492, 684
Hpy188III TCNNGA 5 cut(s) 9, 88, 228, 256, 390
Hpy8I GTNNAC 4 cut(s) 55, 106, 353, 625
HpyAV CCTTC 2 cut(s) 62, 483
HpyCH4III ACNGT 2 cut(s) 182, 622
HpyCH4IV ACGT 2 cut(s) 168, 594
HpyCH4V TGCA 7 cut(s) 4, 47, 60, 156, 197, 268, 511
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 274
HpyF3I CTNAG 2 cut(s) 243, 681
HpySE526I ACGT 2 cut(s) 168, 594
Hsp92I GRCGYC 1 cut(s) 594
Hsp92II CATG 2 cut(s) 156, 272
Kpn2I TCCGGA 1 cut(s) 389
Kzo9I GATC 2 cut(s) 133, 670
LmnI GCTCC 1 cut(s) 464
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 3 cut(s) 56, 64, 639
MabI ACCWGGT 1 cut(s) 158
MaeI CTAG 1 cut(s) 356
MaeII ACGT 2 cut(s) 168, 594
MaeIII GTNAC 3 cut(s) 169, 341, 652
MalI GATC 2 cut(s) 135, 672
MboI GATC 2 cut(s) 133, 670
MboII GAAGA 3 cut(s) 113, 468, 707
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 2 cut(s) 133, 670
MhlI GDGCHC 2 cut(s) 249, 682
MlsI TGGCCA 1 cut(s) 146
MluCI AATT 7 cut(s) 98, 311, 336, 396, 512, 578, 634
MluNI TGGCCA 1 cut(s) 146
MlyI GAGTC 1 cut(s) 555
MmeI TCCRAC 1 cut(s) 161
MnlI CCTC 4 cut(s) 243, 423, 432, 544
Mox20I TGGCCA 1 cut(s) 146
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 389
MscI TGGCCA 1 cut(s) 146
MseI TTAA 1 cut(s) 515
MslI CAYNNNNRTG 1 cut(s) 536
Msp20I TGGCCA 1 cut(s) 146
MspI CCGG 2 cut(s) 390, 545
MspR9I CCNGG 1 cut(s) 160
MunI CAATTG 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 4
MvaI CCWGG 1 cut(s) 160
MwoI GCNNNNNNNGC 2 cut(s) 44, 274
NdeII GATC 2 cut(s) 133, 670
NlaIII CATG 2 cut(s) 156, 272
NlaIV GGNNCC 3 cut(s) 135, 619, 672
NmuCI GTSAC 1 cut(s) 341
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 272
OliI CACNNNNGTG 1 cut(s) 536
PaeR7I CTCGAG 1 cut(s) 9
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PctI GAATGC 1 cut(s) 4
PfeI GAWTC 1 cut(s) 252
PinAI ACCGGT 1 cut(s) 544
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 1 cut(s) 555
PpsI GAGTC 1 cut(s) 555
PpuMI RGGWCCY 1 cut(s) 230
Psp124BI GAGCTC 2 cut(s) 249, 682
Psp5II RGGWCCY 1 cut(s) 230
Psp6I CCWGG 1 cut(s) 158
PspFI CCCAGC 1 cut(s) 129
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 3 cut(s) 135, 619, 672
PspPI GGNCC 4 cut(s) 205, 230, 320, 618
PspPPI RGGWCCY 1 cut(s) 230
PsuI RGATCY 2 cut(s) 133, 670
RsaI GTAC 4 cut(s) 374, 504, 624, 666
RsaNI GTAC 4 cut(s) 373, 503, 623, 665
RseI CAYNNNNRTG 1 cut(s) 536
SacI GAGCTC 2 cut(s) 249, 682
SalI GTCGAC 1 cut(s) 104
SaqAI TTAA 1 cut(s) 515
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 2 cut(s) 133, 670
Sau96I GGNCC 4 cut(s) 205, 230, 320, 618
SchI GAGTC 1 cut(s) 555
ScrFI CCNGG 1 cut(s) 160
SduI GDGCHC 2 cut(s) 249, 682
SexAI ACCWGGT 1 cut(s) 158
SfaNI GCATC 3 cut(s) 56, 64, 639
Sfr274I CTCGAG 1 cut(s) 9
SinI GGWCC 4 cut(s) 205, 230, 320, 618
SlaI CTCGAG 1 cut(s) 9
SmiMI CAYNNNNRTG 1 cut(s) 536
SmlI CTYRAG 5 cut(s) 9, 346, 418, 427, 598
SmoI CTYRAG 5 cut(s) 9, 346, 418, 427, 598
SpeI ACTAGT 1 cut(s) 355
Sse9I AATT 7 cut(s) 98, 311, 336, 396, 512, 578, 634
SsiI CCGC 3 cut(s) 333, 448, 628
SspMI CTAG 1 cut(s) 356
SstI GAGCTC 2 cut(s) 249, 682
StyD4I CCNGG 1 cut(s) 158
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 2 cut(s) 182, 622
TaiI ACGT 2 cut(s) 171, 597
TaqI TCGA 2 cut(s) 10, 105
TasI AATT 7 cut(s) 98, 311, 336, 396, 512, 578, 634
TatI WGTACW 3 cut(s) 372, 502, 664
TfiI GAWTC 1 cut(s) 252
Tru1I TTAA 1 cut(s) 515
Tru9I TTAA 1 cut(s) 515
TscAI CASTG 1 cut(s) 538
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 1 cut(s) 38
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 1 cut(s) 318
TspRI CASTG 1 cut(s) 538
VpaK11BI GGWCC 4 cut(s) 205, 230, 320, 618
XapI RAATTY 1 cut(s) 311
XceI RCATGY 1 cut(s) 272
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XhoI CTCGAG 1 cut(s) 9
XmiI GTMKAC 1 cut(s) 105
XspI CTAG 1 cut(s) 356
ZraI GACGTC 1 cut(s) 595
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.