FvH4_4g23092

receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016827
Physical Location & Seq
Forward (+)
25673202 .. 25675286
2085 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23092.t1

Sequence Viewer

Length: 672 bp
ATGATTTCTCGAGTTTTGCTTTGTATTCTGTTTGCAGTTGCCATTGCATCTGTGGATTGTAACTTGGAAGGTGATATTCTGTATTCCTGGAAGACCTTATTGGTGGATCCTTACAATGTCCTTGCTAGCTGGAACCTGACATCCCACAATCCATGCCCCTGGTTTCATGTTACCTGCAACAATCAAAACATCGTTACAAGGGTGGACCTTGGCAATGCTGGACTATCAGGACCTATTATCCCTGCGCTTGCAAACTTAACCAACCTCCAATACTTGGAGTTATACCAGAACAAATTTTATGGATCTATTCCATCGGAACTTGGTCACTTAAAAGAACTAGTCAGCTTGGACTTGTACCGGAACCAACTCTCGGGACCAATTCCAGAGACCTTAGGTCACTTGAATTCATTAAGATATTTGAGGGTCTTTCACAATAATCTAACTGGGGCTATTCCTTCATCTCTTGGCAATTTGACTAGTTTACAAATTCTGAAATTAAACAAGAACAGTCTAACCGGTGCTTTACCATTAGAGGTCATTGAACTTGTTCGTTTTGGCAACTTGACCGTATTGGATGTCTCAAACAATCTGTTGGCAGGGACCGTACACAGCACCAACTCAACAGGTTTTGCAGTTACAAAAATCATACAAGATCCAAAAGCTCAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

224

Amino Acids

24.43

Weight (kDa)

6.57

Isoelectric Point (pI)

23.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 21 - 60 1e-08 Leucine rich repeat N-terminal domain
LRR_14 PF23598 81 - 194 4.3e-14 Leucine-rich repeat region
LRR_8 PF13855 88 - 147 2.7e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016827)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g23091 FvH4_4g23092 FvH4_4g23092
malus_domestica MD13G1125600.v1.1
pyrus_communis pycom13g10960
rosa_chinensis RchiOBHm_Chr4g0429381
rosa_laevigata RLG00000007075
rosa_multiflora Rmu_sc0003708.1_g000022
rosa_roxburghii Rroxscaffold_5G00371020
rosa_rugosa Rorug04G0235400
rosa_samantha Rh4AG291300 Rh4CG312600 Rh4DG294100
rosa_wichuraiana Rw4G025220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 182
AccB7I CCANNNNNTGG 1 cut(s) 274
AclWI GGATC 4 cut(s) 101, 114, 310, 647
AcsI RAATTY 3 cut(s) 293, 403, 486
AfaI GTAC 2 cut(s) 356, 606
AfiI CCNNNNNNNGG 2 cut(s) 274, 370
AgeI ACCGGT 1 cut(s) 515
AgsI TTSAA 2 cut(s) 403, 542
AhdI GACNNNNNGTC 1 cut(s) 393
AhlI ACTAGT 2 cut(s) 337, 476
AjnI CCWGG 2 cut(s) 86, 158
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AloI GAACNNNNNNTCC 2 cut(s) 125, 157
AluBI AGCT 3 cut(s) 129, 345, 662
AluI AGCT 3 cut(s) 129, 345, 662
Alw26I GTCTC 2 cut(s) 380, 583
AlwI GGATC 4 cut(s) 101, 114, 310, 647
Ama87I CYCGRG 2 cut(s) 9, 370
ApoI RAATTY 3 cut(s) 293, 403, 486
AsiGI ACCGGT 1 cut(s) 515
Asp700I GAANNNNTTC 1 cut(s) 546
AspLEI GCGC 1 cut(s) 247
AspS9I GGNCC 4 cut(s) 205, 230, 374, 600
AsuHPI GGTGA 1 cut(s) 83
AsuNHI GCTAGC 1 cut(s) 125
AvaI CYCGRG 2 cut(s) 9, 370
AvaII GGWCC 4 cut(s) 205, 230, 374, 600
AxyI CCTNAGG 1 cut(s) 391
BamHI GGATCC 1 cut(s) 106
BbsI GAAGAC 1 cut(s) 98
BccI CCATC 1 cut(s) 319
BciT130I CCWGG 2 cut(s) 88, 160
BcoDI GTCTC 2 cut(s) 380, 583
BcuI ACTAGT 2 cut(s) 337, 476
BfaI CTAG 3 cut(s) 126, 338, 477
BfuAI ACCTGC 1 cut(s) 182
Bme1390I CCNGG 2 cut(s) 88, 160
Bme18I GGWCC 4 cut(s) 205, 230, 374, 600
BmeRI GACNNNNNGTC 1 cut(s) 393
BmeT110I CYCGRG 2 cut(s) 9, 370
BmgT120I GGNCC 4 cut(s) 205, 230, 374, 600
BmiI GGNNCC 5 cut(s) 108, 134, 362, 375, 601
BmrFI CCNGG 2 cut(s) 88, 160
BmrI ACTGGG 1 cut(s) 453
BmsI GCATC 1 cut(s) 56
BmtI GCTAGC 1 cut(s) 129
BmuI ACTGGG 1 cut(s) 453
BpiI GAAGAC 1 cut(s) 98
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 2 cut(s) 158, 208
BsaWI WCCGGW 2 cut(s) 357, 515
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 370
Bse118I RCCGGY 1 cut(s) 515
Bse1I ACTGG 1 cut(s) 448
Bse21I CCTNAGG 1 cut(s) 391
Bse3DI GCAATG 2 cut(s) 42, 220
BseBI CCWGG 2 cut(s) 88, 160
BseDI CCNNGG 2 cut(s) 158, 208
BseGI GGATG 2 cut(s) 140, 580
BseLI CCNNNNNNNGG 2 cut(s) 274, 370
BseMI GCAATG 2 cut(s) 42, 220
BseNI ACTGG 1 cut(s) 448
BshTI ACCGGT 1 cut(s) 515
BsiHKCI CYCGRG 2 cut(s) 9, 370
BsiSI CCGG 2 cut(s) 358, 516
BslFI GGGAC 2 cut(s) 387, 613
BslI CCNNNNNNNGG 2 cut(s) 274, 370
BsmAI GTCTC 2 cut(s) 380, 583
BsmFI GGGAC 2 cut(s) 387, 613
Bso31I GGTCTC 1 cut(s) 380
BsoBI CYCGRG 2 cut(s) 9, 370
Bsp143I GATC 3 cut(s) 106, 302, 652
BspLI GGNNCC 5 cut(s) 108, 134, 362, 375, 601
BspMI ACCTGC 1 cut(s) 182
BspOI GCTAGC 1 cut(s) 129
BspPI GGATC 4 cut(s) 101, 114, 310, 647
BspTNI GGTCTC 1 cut(s) 380
BsrDI GCAATG 2 cut(s) 42, 220
BsrFI RCCGGY 1 cut(s) 515
BsrI ACTGG 1 cut(s) 448
BssAI RCCGGY 1 cut(s) 515
BssECI CCNNGG 2 cut(s) 158, 208
BssMI GATC 3 cut(s) 106, 302, 652
BssT1I CCWWGG 1 cut(s) 208
Bst2UI CCWGG 2 cut(s) 88, 160
Bst4CI ACNGT 3 cut(s) 509, 568, 604
BstC8I GCNNGC 2 cut(s) 127, 249
BstDEI CTNAG 2 cut(s) 391, 663
BstF5I GGATG 2 cut(s) 140, 580
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 3 cut(s) 109, 305, 655
BstMAI GTCTC 2 cut(s) 380, 583
BstMBI GATC 3 cut(s) 106, 302, 652
BstNI CCWGG 2 cut(s) 88, 160
BstSCI CCNGG 2 cut(s) 86, 158
BstV2I GAAGAC 1 cut(s) 98
BstX2I RGATCY 3 cut(s) 106, 302, 652
BstXI CCANNNNNNTGG 1 cut(s) 159
BstYI RGATCY 3 cut(s) 106, 302, 652
Bsu36I CCTNAGG 1 cut(s) 391
BtsCI GGATG 2 cut(s) 140, 580
BveI ACCTGC 1 cut(s) 182
Cac8I GCNNGC 2 cut(s) 127, 249
CfoI GCGC 1 cut(s) 247
Cfr10I RCCGGY 1 cut(s) 515
Cfr13I GGNCC 4 cut(s) 205, 230, 374, 600
Csp6I GTAC 2 cut(s) 355, 605
CspAI ACCGGT 1 cut(s) 515
CviAII CATG 2 cut(s) 153, 167
CviJI RGCY 4 cut(s) 129, 345, 449, 662
CviKI_1 RGCY 4 cut(s) 129, 345, 449, 662
CviQI GTAC 2 cut(s) 355, 605
DdeI CTNAG 2 cut(s) 391, 663
DpnI GATC 3 cut(s) 108, 304, 654
DpnII GATC 3 cut(s) 106, 302, 652
DriI GACNNNNNGTC 1 cut(s) 393
Eam1105I GACNNNNNGTC 1 cut(s) 393
Eco130I CCWWGG 1 cut(s) 208
Eco31I GGTCTC 1 cut(s) 380
Eco47I GGWCC 4 cut(s) 205, 230, 374, 600
Eco81I CCTNAGG 1 cut(s) 391
Eco88I CYCGRG 2 cut(s) 9, 370
EcoO109I RGGNCCY 1 cut(s) 230
EcoRI GAATTC 1 cut(s) 403
EcoRII CCWGG 2 cut(s) 86, 158
EcoT14I CCWWGG 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 208
FaeI CATG 2 cut(s) 156, 170
FaiI YATR 5 cut(s) 154, 168, 283, 300, 647
FaqI GGGAC 2 cut(s) 387, 613
FatI CATG 2 cut(s) 152, 166
FokI GGATG 2 cut(s) 127, 587
FspBI CTAG 3 cut(s) 126, 338, 477
GlaI GCGC 1 cut(s) 246
HapII CCGG 2 cut(s) 358, 516
HhaI GCGC 1 cut(s) 247
Hin1II CATG 2 cut(s) 156, 170
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HpaII CCGG 2 cut(s) 358, 516
HphI GGTGA 1 cut(s) 83
Hpy166II GTNNAC 3 cut(s) 205, 482, 607
Hpy188I TCNGA 3 cut(s) 316, 492, 666
Hpy188III TCNNGA 4 cut(s) 9, 228, 372, 383
Hpy8I GTNNAC 3 cut(s) 205, 482, 607
HpyAV CCTTC 2 cut(s) 62, 465
HpyCH4III ACNGT 3 cut(s) 509, 568, 604
HpyCH4V TGCA 5 cut(s) 35, 47, 177, 251, 632
HpyF3I CTNAG 2 cut(s) 391, 663
Hsp92II CATG 2 cut(s) 156, 170
HspAI GCGC 1 cut(s) 245
Kzo9I GATC 3 cut(s) 106, 302, 652
LweI GCATC 1 cut(s) 56
MaeI CTAG 3 cut(s) 126, 338, 477
MaeIII GTNAC 6 cut(s) 59, 169, 193, 323, 395, 634
MalI GATC 3 cut(s) 108, 304, 654
MboI GATC 3 cut(s) 106, 302, 652
MboII GAAGA 1 cut(s) 103
MflI RGATCY 3 cut(s) 106, 302, 652
MluCI AATT 6 cut(s) 293, 378, 403, 469, 486, 494
MnlI CCTC 3 cut(s) 275, 414, 526
MroXI GAANNNNTTC 1 cut(s) 546
MseI TTAA 4 cut(s) 257, 329, 410, 497
MspI CCGG 2 cut(s) 358, 516
MspR9I CCNGG 2 cut(s) 88, 160
MvaI CCWGG 2 cut(s) 88, 160
NdeII GATC 3 cut(s) 106, 302, 652
NheI GCTAGC 1 cut(s) 125
NlaIII CATG 2 cut(s) 156, 170
NlaIV GGNNCC 5 cut(s) 108, 134, 362, 375, 601
NmuCI GTSAC 2 cut(s) 323, 395
PaeR7I CTCGAG 1 cut(s) 9
PdmI GAANNNNTTC 1 cut(s) 546
PflMI CCANNNNNTGG 1 cut(s) 274
PfoI TCCNGGA 1 cut(s) 86
PinAI ACCGGT 1 cut(s) 515
PpuMI RGGWCCY 1 cut(s) 230
Psp5II RGGWCCY 1 cut(s) 230
Psp6I CCWGG 2 cut(s) 86, 158
PspGI CCWGG 2 cut(s) 86, 158
PspN4I GGNNCC 5 cut(s) 108, 134, 362, 375, 601
PspPI GGNCC 4 cut(s) 205, 230, 374, 600
PspPPI RGGWCCY 1 cut(s) 230
PsuI RGATCY 3 cut(s) 106, 302, 652
RsaI GTAC 2 cut(s) 356, 606
RsaNI GTAC 2 cut(s) 355, 605
SaqAI TTAA 4 cut(s) 257, 329, 410, 497
Sau3AI GATC 3 cut(s) 106, 302, 652
Sau96I GGNCC 4 cut(s) 205, 230, 374, 600
ScrFI CCNGG 2 cut(s) 88, 160
SfaNI GCATC 1 cut(s) 56
Sfr274I CTCGAG 1 cut(s) 9
SinI GGWCC 4 cut(s) 205, 230, 374, 600
SlaI CTCGAG 1 cut(s) 9
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
SpeI ACTAGT 2 cut(s) 337, 476
Sse9I AATT 6 cut(s) 293, 378, 403, 469, 486, 494
SspMI CTAG 3 cut(s) 126, 338, 477
StyD4I CCNGG 2 cut(s) 86, 158
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 3 cut(s) 509, 568, 604
TaqI TCGA 1 cut(s) 10
TasI AATT 6 cut(s) 293, 378, 403, 469, 486, 494
Tru1I TTAA 4 cut(s) 257, 329, 410, 497
Tru9I TTAA 4 cut(s) 257, 329, 410, 497
TseFI GTSAC 2 cut(s) 323, 395
Tsp45I GTSAC 2 cut(s) 323, 395
TspDTI ATGAA 3 cut(s) 155, 396, 447
Van91I CCANNNNNTGG 1 cut(s) 274
VpaK11BI GGWCC 4 cut(s) 205, 230, 374, 600
XapI RAATTY 3 cut(s) 293, 403, 486
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XhoI CTCGAG 1 cut(s) 9
XmnI GAANNNNTTC 1 cut(s) 546
XspI CTAG 3 cut(s) 126, 338, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.