Rh4AG291300

receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0016827
Physical Location & Seq
Forward (+)
60489582 .. 60491907
2326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG291300.1

Sequence Viewer

Length: 642 bp
ATGGTTTCTCGAGTTTTGCTTTGTTTTCTGTTTGCAGTTGCCACTGCATCTGTGGATTGTAACTTGGAAGGGGATATTCTTTATTCCTGGAAAACCATGTTGGTCGACCCTAACAATGTTCTTGCTAGCTGGAACCTGACATTCCCCAATCCATGCTCTTGGTTCCATGTTACCTGCAATAACGAAAACATCGTTACAAGGCTGGACCTTGGCAATGCTGGATTATCAGGACCTATTATCCCTGCGCTTGCAAATTTGACTAACCTCCAATACTTGGAGCTATACCAGAACAAATTTAATGGATCTATTCCATCGGAACTTGGTCACTTAAAAGACCTAGTCAGCTTGGACTTGTACTGGAACCAACTCTCGGGTTCAATTCCAGAGACATTAGGTCACTTGAATTCATTGAGATTTTTGAGGGTCTTTCGCAATAATCTAACTGGACCTATTCCTTGGTCTCTTGGCAATTTGACAAGTTTACAAATCCTGAAATTAAACAAGAACCGTCTAACTGGTGCTTTACCAGTAGAGGTCATTGAACTCGTTCGTTTTGGCAACTTGGGCGTTTTGGATGTCTCAAACAATCTGTTGGCAGGAACCGTACACCCCACCAATTCAACAGGTACTCGAACAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

213

Amino Acids

23.46

Weight (kDa)

6.4

Isoelectric Point (pI)

19.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 21 - 60 1e-09 Leucine rich repeat N-terminal domain
LRR_14 PF23598 76 - 193 2.8e-13 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016827)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g23091 FvH4_4g23092 FvH4_4g23092
malus_domestica MD13G1125600.v1.1
pyrus_communis pycom13g10960
rosa_chinensis RchiOBHm_Chr4g0429381
rosa_laevigata RLG00000007075
rosa_multiflora Rmu_sc0003708.1_g000022
rosa_roxburghii Rroxscaffold_5G00371020
rosa_rugosa Rorug04G0235400
rosa_samantha Rh4AG291300 Rh4CG312600 Rh4DG294100
rosa_wichuraiana Rw4G025220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 182
AccB7I CCANNNNNTGG 1 cut(s) 274
AccI GTMKAC 1 cut(s) 105
AclWI GGATC 1 cut(s) 310
AcsI RAATTY 3 cut(s) 253, 293, 403
AfaI GTAC 3 cut(s) 356, 606, 628
AfiI CCNNNNNNNGG 2 cut(s) 274, 370
AgsI TTSAA 4 cut(s) 378, 403, 542, 621
AhdI GACNNNNNGTC 1 cut(s) 393
AjnI CCWGG 1 cut(s) 86
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AluBI AGCT 3 cut(s) 129, 280, 345
AluI AGCT 3 cut(s) 129, 280, 345
Alw26I GTCTC 3 cut(s) 380, 465, 583
AlwI GGATC 1 cut(s) 310
Ama87I CYCGRG 2 cut(s) 9, 370
ApoI RAATTY 3 cut(s) 253, 293, 403
Asp700I GAANNNNTTC 1 cut(s) 546
AspLEI GCGC 1 cut(s) 247
AspS9I GGNCC 3 cut(s) 205, 230, 446
AsuNHI GCTAGC 1 cut(s) 125
AvaI CYCGRG 2 cut(s) 9, 370
AvaII GGWCC 3 cut(s) 205, 230, 446
BccI CCATC 1 cut(s) 319
BciT130I CCWGG 1 cut(s) 88
BcoDI GTCTC 3 cut(s) 380, 465, 583
BfaI CTAG 2 cut(s) 126, 338
BfuAI ACCTGC 1 cut(s) 182
Bme1390I CCNGG 1 cut(s) 88
Bme18I GGWCC 3 cut(s) 205, 230, 446
BmeRI GACNNNNNGTC 1 cut(s) 393
BmeT110I CYCGRG 2 cut(s) 9, 370
BmgT120I GGNCC 3 cut(s) 205, 230, 446
BmiI GGNNCC 4 cut(s) 134, 164, 362, 601
BmrFI CCNGG 1 cut(s) 88
BmsI GCATC 1 cut(s) 56
BmtI GCTAGC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 465
BsaJI CCNNGG 2 cut(s) 208, 455
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 370
Bse1I ACTGG 4 cut(s) 362, 448, 520, 527
Bse3DI GCAATG 1 cut(s) 220
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 2 cut(s) 208, 455
BseGI GGATG 1 cut(s) 580
BseLI CCNNNNNNNGG 2 cut(s) 274, 370
BseMI GCAATG 1 cut(s) 220
BseNI ACTGG 4 cut(s) 362, 448, 520, 527
BsiHKCI CYCGRG 2 cut(s) 9, 370
BslI CCNNNNNNNGG 2 cut(s) 274, 370
BsmAI GTCTC 3 cut(s) 380, 465, 583
Bso31I GGTCTC 1 cut(s) 465
BsoBI CYCGRG 2 cut(s) 9, 370
Bsp143I GATC 1 cut(s) 302
BspLI GGNNCC 4 cut(s) 134, 164, 362, 601
BspMI ACCTGC 1 cut(s) 182
BspOI GCTAGC 1 cut(s) 129
BspPI GGATC 1 cut(s) 310
BspTNI GGTCTC 1 cut(s) 465
BsrDI GCAATG 1 cut(s) 220
BsrI ACTGG 4 cut(s) 362, 448, 520, 527
BssECI CCNNGG 2 cut(s) 208, 455
BssMI GATC 1 cut(s) 302
BssT1I CCWWGG 2 cut(s) 208, 455
Bst2UI CCWGG 1 cut(s) 88
Bst4CI ACNGT 2 cut(s) 509, 604
BstC8I GCNNGC 2 cut(s) 127, 249
BstF5I GGATG 1 cut(s) 580
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 1 cut(s) 305
BstMAI GTCTC 3 cut(s) 380, 465, 583
BstMBI GATC 1 cut(s) 302
BstMWI GCNNNNNNNGC 1 cut(s) 564
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BstX2I RGATCY 1 cut(s) 302
BstXI CCANNNNNNTGG 1 cut(s) 159
BstYI RGATCY 1 cut(s) 302
BtsCI GGATG 1 cut(s) 580
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 42
BveI ACCTGC 1 cut(s) 182
Cac8I GCNNGC 2 cut(s) 127, 249
CfoI GCGC 1 cut(s) 247
Cfr13I GGNCC 3 cut(s) 205, 230, 446
Csp6I GTAC 3 cut(s) 355, 605, 627
CviAII CATG 3 cut(s) 97, 153, 167
CviJI RGCY 4 cut(s) 129, 202, 280, 345
CviKI_1 RGCY 4 cut(s) 129, 202, 280, 345
CviQI GTAC 3 cut(s) 355, 605, 627
DpnI GATC 1 cut(s) 304
DpnII GATC 1 cut(s) 302
DriI GACNNNNNGTC 1 cut(s) 393
Eam1105I GACNNNNNGTC 1 cut(s) 393
Eco130I CCWWGG 2 cut(s) 208, 455
Eco31I GGTCTC 1 cut(s) 465
Eco47I GGWCC 3 cut(s) 205, 230, 446
Eco88I CYCGRG 2 cut(s) 9, 370
EcoO109I RGGNCCY 1 cut(s) 230
EcoRI GAATTC 1 cut(s) 403
EcoRII CCWGG 1 cut(s) 86
EcoT14I CCWWGG 2 cut(s) 208, 455
ErhI CCWWGG 2 cut(s) 208, 455
FaeI CATG 3 cut(s) 100, 156, 170
FaiI YATR 4 cut(s) 98, 154, 168, 283
FatI CATG 3 cut(s) 96, 152, 166
FblI GTMKAC 1 cut(s) 105
FokI GGATG 1 cut(s) 587
FspBI CTAG 2 cut(s) 126, 338
GlaI GCGC 1 cut(s) 246
HhaI GCGC 1 cut(s) 247
Hin1II CATG 3 cut(s) 100, 156, 170
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
Hpy166II GTNNAC 3 cut(s) 106, 482, 607
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 4 cut(s) 9, 228, 383, 490
Hpy8I GTNNAC 3 cut(s) 106, 482, 607
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 2 cut(s) 509, 604
HpyCH4V TGCA 4 cut(s) 35, 47, 177, 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 564
Hsp92II CATG 3 cut(s) 100, 156, 170
HspAI GCGC 1 cut(s) 245
Kzo9I GATC 1 cut(s) 302
LmnI GCTCC 1 cut(s) 277
LweI GCATC 1 cut(s) 56
MaeI CTAG 2 cut(s) 126, 338
MaeIII GTNAC 5 cut(s) 59, 169, 193, 323, 395
MalI GATC 1 cut(s) 304
MboI GATC 1 cut(s) 302
MflI RGATCY 1 cut(s) 302
MluCI AATT 8 cut(s) 253, 293, 378, 403, 469, 494, 616, 637
MnlI CCTC 3 cut(s) 275, 414, 526
MroXI GAANNNNTTC 1 cut(s) 546
MseI TTAA 3 cut(s) 297, 329, 497
MspR9I CCNGG 1 cut(s) 88
MvaI CCWGG 1 cut(s) 88
MwoI GCNNNNNNNGC 1 cut(s) 564
NdeII GATC 1 cut(s) 302
NheI GCTAGC 1 cut(s) 125
NlaIII CATG 3 cut(s) 100, 156, 170
NlaIV GGNNCC 4 cut(s) 134, 164, 362, 601
NmuCI GTSAC 2 cut(s) 323, 395
PaeR7I CTCGAG 1 cut(s) 9
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 546
PflFI GACNNNGTC 1 cut(s) 338
PflMI CCANNNNNTGG 1 cut(s) 274
PfoI TCCNGGA 1 cut(s) 86
PpuMI RGGWCCY 1 cut(s) 230
Psp5II RGGWCCY 1 cut(s) 230
Psp6I CCWGG 1 cut(s) 86
PspGI CCWGG 1 cut(s) 86
PspN4I GGNNCC 4 cut(s) 134, 164, 362, 601
PspPI GGNCC 3 cut(s) 205, 230, 446
PspPPI RGGWCCY 1 cut(s) 230
PsuI RGATCY 1 cut(s) 302
PsyI GACNNNGTC 1 cut(s) 338
RsaI GTAC 3 cut(s) 356, 606, 628
RsaNI GTAC 3 cut(s) 355, 605, 627
SalI GTCGAC 1 cut(s) 104
SaqAI TTAA 3 cut(s) 297, 329, 497
Sau3AI GATC 1 cut(s) 302
Sau96I GGNCC 3 cut(s) 205, 230, 446
ScrFI CCNGG 1 cut(s) 88
SfaNI GCATC 1 cut(s) 56
Sfr274I CTCGAG 1 cut(s) 9
SinI GGWCC 3 cut(s) 205, 230, 446
SlaI CTCGAG 1 cut(s) 9
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
Sse9I AATT 8 cut(s) 253, 293, 378, 403, 469, 494, 616, 637
SspMI CTAG 2 cut(s) 126, 338
StyD4I CCNGG 1 cut(s) 86
StyI CCWWGG 2 cut(s) 208, 455
TaaI ACNGT 2 cut(s) 509, 604
TaqI TCGA 3 cut(s) 10, 105, 631
TasI AATT 8 cut(s) 253, 293, 378, 403, 469, 494, 616, 637
TatI WGTACW 1 cut(s) 354
Tru1I TTAA 3 cut(s) 297, 329, 497
Tru9I TTAA 3 cut(s) 297, 329, 497
TscAI CASTG 1 cut(s) 49
TseFI GTSAC 2 cut(s) 323, 395
Tsp45I GTSAC 2 cut(s) 323, 395
TspDTI ATGAA 1 cut(s) 396
TspRI CASTG 1 cut(s) 49
Tth111I GACNNNGTC 1 cut(s) 338
Van91I CCANNNNNTGG 1 cut(s) 274
VpaK11BI GGWCC 3 cut(s) 205, 230, 446
XapI RAATTY 3 cut(s) 253, 293, 403
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XhoI CTCGAG 1 cut(s) 9
XmiI GTMKAC 1 cut(s) 105
XmnI GAANNNNTTC 1 cut(s) 546
XspI CTAG 2 cut(s) 126, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.