MD13G1125600.v1.1

receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0016827
Physical Location & Seq
Reverse (-)
9310161 .. 9319346
9186 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1125600.v1.1.491

Sequence Viewer

Length: 666 bp
ATGGGTTCTCGAGTTTTGCTTGTTTTTTATCTTGCAGCAGTAGCTATTGCATCAGTGGAATGCTACTCGGAAGGAGATGCTCTGAGTGTCTGGAAATCCAGCTTGGTCGACCCAAACAATGTCCTCCAGAGCTGGGATCCAACGTTACGAAATCCATGCACCTGGTTCCACGTTACTTGCAATTCTGAAAACAGTGTTACAAGGGTGGACCTTGGCGATGCTAACCTGTCAGGACTTATTGTCCCTGAGCTGGGAATCTTGGCCAACCTTCAGTACTTGGAGGTATTTGGCAATAACCTCTTTGGATCTATACCAAAGGAAATCGGTAACTTGACAAAACTCGTCAGCTTGGACCTTTACCAGAATAATCTCACAGGGACAATTCCGACATCTTTGGGACACCTCCCTTCCTTGAGGTTTATGAGGGTCTTTAGCAATAGTCTGACTGGACCTATTCCTCTTAGTCTCGGAAATTTGAAATCTTTACAGATCTTGGAATTAAACAGTAACTTGCTCACTGGCACTATACCTGCAGAGCTCCTTAATCTCATTCGATTTGGCAACTTGAATCTTTTCAATGTATCAGACAATCTACTGCAAGGGACTGTACACCGTACCAATTCAACAGTTACCACAATAATACAAGATCCACAAGCTCAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

222

Amino Acids

24.08

Weight (kDa)

5.27

Isoelectric Point (pI)

26.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 23 - 61 7.8e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 75 - 191 5.2e-12 Leucine-rich repeat region
LRR_8 PF13855 89 - 148 8.2e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016827)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g23091 FvH4_4g23092 FvH4_4g23092
malus_domestica MD13G1125600.v1.1
pyrus_communis pycom13g10960
rosa_chinensis RchiOBHm_Chr4g0429381
rosa_laevigata RLG00000007075
rosa_multiflora Rmu_sc0003708.1_g000022
rosa_roxburghii Rroxscaffold_5G00371020
rosa_rugosa Rorug04G0235400
rosa_samantha Rh4AG291300 Rh4CG312600 Rh4DG294100
rosa_wichuraiana Rw4G025220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 538
AccI GTMKAC 1 cut(s) 108
AclI AACGTT 1 cut(s) 143
AclWI GGATC 4 cut(s) 131, 144, 313, 641
AcoI YGGCCR 1 cut(s) 261
AcsI RAATTY 1 cut(s) 472
AcuI CTGAAG 1 cut(s) 254
AfaI GTAC 3 cut(s) 275, 609, 616
AfiI CCNNNNNNNGG 3 cut(s) 133, 250, 251
AgsI TTSAA 4 cut(s) 478, 568, 577, 624
AhdI GACNNNNNGTC 1 cut(s) 239
AjnI CCWGG 1 cut(s) 161
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AluBI AGCT 7 cut(s) 44, 102, 132, 250, 348, 538, 656
AluI AGCT 7 cut(s) 44, 102, 132, 250, 348, 538, 656
Alw21I GWGCWC 1 cut(s) 540
Alw26I GTCTC 1 cut(s) 470
AlwI GGATC 4 cut(s) 131, 144, 313, 641
Ama87I CYCGRG 1 cut(s) 9
AoxI GGCC 1 cut(s) 261
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 472
Asp700I GAANNNNTTC 1 cut(s) 572
AspS9I GGNCC 3 cut(s) 208, 352, 449
AvaI CYCGRG 1 cut(s) 9
AvaII GGWCC 3 cut(s) 208, 352, 449
BalI TGGCCA 1 cut(s) 263
BamHI GGATCC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 540
Bbv12I GWGCWC 1 cut(s) 540
BbvI GCAGC 1 cut(s) 47
BcgI CGANNNNNNTGC 2 cut(s) 138, 172
BciT130I CCWGG 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 470
BfmI CTRYAG 1 cut(s) 531
BfuAI ACCTGC 1 cut(s) 538
BglII AGATCT 1 cut(s) 489
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
BmcAI AGTACT 1 cut(s) 275
Bme1390I CCNGG 1 cut(s) 163
Bme18I GGWCC 3 cut(s) 208, 352, 449
BmeRI GACNNNNNGTC 1 cut(s) 239
BmeT110I CYCGRG 1 cut(s) 9
BmgT120I GGNCC 3 cut(s) 208, 352, 449
BmiI GGNNCC 2 cut(s) 138, 167
BmrFI CCNGG 1 cut(s) 163
BmsI GCATC 3 cut(s) 59, 67, 208
BpmI CTGGAG 1 cut(s) 110
Bpu10I CCTNAGC 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 433
BsaJI CCNNGG 1 cut(s) 211
Bsc4I CCNNNNNNNGG 3 cut(s) 133, 250, 251
Bse1I ACTGG 2 cut(s) 451, 523
BseBI CCWGG 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 211
BseLI CCNNNNNNNGG 3 cut(s) 133, 250, 251
BseMII CTCAG 2 cut(s) 74, 237
BseNI ACTGG 2 cut(s) 451, 523
BseXI GCAGC 1 cut(s) 47
BseYI CCCAGC 2 cut(s) 132, 250
BshFI GGCC 1 cut(s) 263
BsiHKAI GWGCWC 1 cut(s) 540
BsiHKCI CYCGRG 1 cut(s) 9
BslFI GGGAC 4 cut(s) 227, 391, 411, 616
BslI CCNNNNNNNGG 3 cut(s) 133, 250, 251
BsmAI GTCTC 1 cut(s) 470
BsmFI GGGAC 4 cut(s) 227, 391, 411, 616
BsmI GAATGC 1 cut(s) 65
BsnI GGCC 1 cut(s) 263
BsoBI CYCGRG 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 540
Bsp1407I TGTACA 1 cut(s) 607
Bsp143I GATC 4 cut(s) 136, 305, 489, 646
BspANI GGCC 1 cut(s) 263
BspCNI CTCAG 2 cut(s) 75, 238
BspLI GGNNCC 2 cut(s) 138, 167
BspMAI CTGCAG 1 cut(s) 535
BspMI ACCTGC 1 cut(s) 538
BspPI GGATC 4 cut(s) 131, 144, 313, 641
BsrGI TGTACA 1 cut(s) 607
BsrI ACTGG 2 cut(s) 451, 523
BssECI CCNNGG 1 cut(s) 211
BssMI GATC 4 cut(s) 136, 305, 489, 646
BssT1I CCWWGG 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 163
Bst4CI ACNGT 5 cut(s) 194, 506, 607, 614, 628
BstAUI TGTACA 1 cut(s) 607
BstDEI CTNAG 4 cut(s) 83, 246, 461, 657
BstKTI GATC 4 cut(s) 139, 308, 492, 649
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 4 cut(s) 136, 305, 489, 646
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 163
BstSCI CCNGG 1 cut(s) 161
BstSFI CTRYAG 1 cut(s) 531
BstV1I GCAGC 1 cut(s) 47
BstX2I RGATCY 4 cut(s) 136, 305, 489, 646
BstXI CCANNNNNNTGG 1 cut(s) 162
BstYI RGATCY 4 cut(s) 136, 305, 489, 646
BsuRI GGCC 1 cut(s) 263
BtgZI GCGATG 1 cut(s) 231
BtsIMutI CAGTG 3 cut(s) 60, 199, 516
BveI ACCTGC 1 cut(s) 538
Cfr13I GGNCC 3 cut(s) 208, 352, 449
CsiI ACCWGGT 1 cut(s) 161
Csp6I GTAC 3 cut(s) 274, 608, 615
CspCI CAANNNNNGTGG 2 cut(s) 158, 193
CviAII CATG 1 cut(s) 156
CviJI RGCY 8 cut(s) 44, 102, 132, 250, 263, 348, 538, 656
CviKI_1 RGCY 8 cut(s) 44, 102, 132, 250, 263, 348, 538, 656
CviQI GTAC 3 cut(s) 274, 608, 615
DdeI CTNAG 4 cut(s) 83, 246, 461, 657
DpnI GATC 4 cut(s) 138, 307, 491, 648
DpnII GATC 4 cut(s) 136, 305, 489, 646
DriI GACNNNNNGTC 1 cut(s) 239
EaeI YGGCCR 1 cut(s) 261
Eam1105I GACNNNNNGTC 1 cut(s) 239
Ecl136II GAGCTC 1 cut(s) 538
Eco130I CCWWGG 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 540
Eco47I GGWCC 3 cut(s) 208, 352, 449
Eco53kI GAGCTC 1 cut(s) 538
Eco57I CTGAAG 1 cut(s) 254
Eco88I CYCGRG 1 cut(s) 9
EcoICRI GAGCTC 1 cut(s) 538
EcoRII CCWGG 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 540
ErhI CCWWGG 1 cut(s) 211
FaeI CATG 1 cut(s) 159
FaiI YATR 4 cut(s) 157, 311, 422, 527
FaqI GGGAC 4 cut(s) 227, 391, 411, 616
FatI CATG 1 cut(s) 155
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 36
FriOI GRGCYC 1 cut(s) 540
Fsp4HI GCNGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 36
GsaI CCCAGC 2 cut(s) 136, 254
GsuI CTGGAG 1 cut(s) 110
HaeIII GGCC 1 cut(s) 263
Hin1II CATG 1 cut(s) 159
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 2 cut(s) 255, 568
Hpy166II GTNNAC 3 cut(s) 109, 208, 610
Hpy188I TCNGA 8 cut(s) 70, 84, 187, 387, 444, 470, 586, 660
Hpy188III TCNNGA 4 cut(s) 9, 91, 127, 231
Hpy8I GTNNAC 3 cut(s) 109, 208, 610
HpyAV CCTTC 3 cut(s) 65, 278, 417
HpyCH4III ACNGT 5 cut(s) 194, 506, 607, 614, 628
HpyCH4IV ACGT 2 cut(s) 143, 171
HpyCH4V TGCA 6 cut(s) 35, 50, 159, 180, 533, 598
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 4 cut(s) 83, 246, 461, 657
HpySE526I ACGT 2 cut(s) 143, 171
Hsp92II CATG 1 cut(s) 159
Kzo9I GATC 4 cut(s) 136, 305, 489, 646
LmnI GCTCC 1 cut(s) 543
Lsp1109I GCAGC 1 cut(s) 47
LweI GCATC 3 cut(s) 59, 67, 208
MabI ACCWGGT 1 cut(s) 161
MaeII ACGT 2 cut(s) 143, 171
MaeIII GTNAC 6 cut(s) 144, 172, 196, 326, 506, 628
MalI GATC 4 cut(s) 138, 307, 491, 648
MboI GATC 4 cut(s) 136, 305, 489, 646
MflI RGATCY 4 cut(s) 136, 305, 489, 646
MhlI GDGCHC 1 cut(s) 540
MlsI TGGCCA 1 cut(s) 263
MluCI AATT 5 cut(s) 181, 381, 472, 497, 619
MluNI TGGCCA 1 cut(s) 263
MmeI TCCRAC 2 cut(s) 164, 410
MnlI CCTC 7 cut(s) 134, 274, 308, 408, 413, 417, 468
Mox20I TGGCCA 1 cut(s) 263
MroXI GAANNNNTTC 1 cut(s) 572
MscI TGGCCA 1 cut(s) 263
MseI TTAA 2 cut(s) 500, 543
Msp20I TGGCCA 1 cut(s) 263
MspR9I CCNGG 1 cut(s) 163
Mva1269I GAATGC 1 cut(s) 65
MvaI CCWGG 1 cut(s) 163
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 4 cut(s) 136, 305, 489, 646
NlaIII CATG 1 cut(s) 159
NlaIV GGNNCC 2 cut(s) 138, 167
PaeR7I CTCGAG 1 cut(s) 9
PctI GAATGC 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 572
PfeI GAWTC 2 cut(s) 255, 568
PkrI GCNGC 1 cut(s) 37
Psp124BI GAGCTC 1 cut(s) 540
Psp1406I AACGTT 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 161
PspFI CCCAGC 2 cut(s) 132, 250
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 2 cut(s) 138, 167
PspPI GGNCC 3 cut(s) 208, 352, 449
PstI CTGCAG 1 cut(s) 535
PsuI RGATCY 4 cut(s) 136, 305, 489, 646
RsaI GTAC 3 cut(s) 275, 609, 616
RsaNI GTAC 3 cut(s) 274, 608, 615
SacI GAGCTC 1 cut(s) 540
SalI GTCGAC 1 cut(s) 107
SaqAI TTAA 2 cut(s) 500, 543
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 4 cut(s) 136, 305, 489, 646
Sau96I GGNCC 3 cut(s) 208, 352, 449
ScaI AGTACT 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 163
SduI GDGCHC 1 cut(s) 540
SexAI ACCWGGT 1 cut(s) 161
SfaNI GCATC 3 cut(s) 59, 67, 208
SfcI CTRYAG 1 cut(s) 531
Sfr274I CTCGAG 1 cut(s) 9
SinI GGWCC 3 cut(s) 208, 352, 449
SlaI CTCGAG 1 cut(s) 9
SmlI CTYRAG 2 cut(s) 9, 412
SmoI CTYRAG 2 cut(s) 9, 412
Sse9I AATT 5 cut(s) 181, 381, 472, 497, 619
SstI GAGCTC 1 cut(s) 540
StyD4I CCNGG 1 cut(s) 161
StyI CCWWGG 1 cut(s) 211
TaaI ACNGT 5 cut(s) 194, 506, 607, 614, 628
TaiI ACGT 2 cut(s) 146, 174
TaqI TCGA 3 cut(s) 10, 108, 553
TasI AATT 5 cut(s) 181, 381, 472, 497, 619
TatI WGTACW 2 cut(s) 273, 607
TfiI GAWTC 2 cut(s) 255, 568
Tru1I TTAA 2 cut(s) 500, 543
Tru9I TTAA 2 cut(s) 500, 543
TscAI CASTG 3 cut(s) 60, 199, 523
TseI GCWGC 1 cut(s) 35
TspRI CASTG 3 cut(s) 60, 199, 523
VpaK11BI GGWCC 3 cut(s) 208, 352, 449
XapI RAATTY 1 cut(s) 472
XhoI CTCGAG 1 cut(s) 9
XmiI GTMKAC 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 572
ZrmI AGTACT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.