Rroxscaffold_5G00371020

receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0016827
Physical Location & Seq
Forward (+)
52656947 .. 52658635
1689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00371020.1

Sequence Viewer

Length: 684 bp
ATGGTTTCTCGAGTTTTGCTTTGTTTTCTGTTTGCAGTTGCCACTGCATCTGTGGATTGTAACTTGGAAGGGGATATTCTTTATTCCTGGAAAACCATATTGGTCGACCCTAACAATGTTCTTGCTAGCTGGAACCTGACATTCCGCAATCCATGCTCTTGGTTCCACGTTACCTGCAATAGCGAAAACCTCGTTACAAGGCTGGACCTTGGCAATGCTGGATTATCAGGACCTATTATCCCTGCACTTGGAAATTTGACTAACCTCCAATACTTGGAGCTATACCAGAACAAATTTAATGGATCTATTCCATCGGAACTTGGTCACTTAAAAGACCTAGTCAGCTTGGACTTGTACTGGAACCAACTCACGGGTTTAATTCCAGAGACATTAGGTCACTTGAATTCATTGAGATTTTTGAGGGTCTTTCGCAATAATCTAACCGGACCTATTCCTTGGTCTCTTGGCAATTTGACTAGTTTACAAATCCTGAAATTAAACAAGAACCGTCTAACTGGTGCTTTACCAGTAGAGGTCATTGAACTCGTTCGTTTTGGCAACTTGGGCGTTTTGGATGTTTCAAACAATCTGCTGGCAGGAACCGTACACCCCACCAATTCAACAGGTTTTGCAGTTACAAAAATCATACAAGATCCGAGCTCGGAACTAAGCCAGAAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

227

Amino Acids

25.01

Weight (kDa)

6.41

Isoelectric Point (pI)

22.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 21 - 60 2.3e-09 Leucine rich repeat N-terminal domain
LRR_14 PF23598 74 - 193 2.1e-13 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016827)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g23091 FvH4_4g23092 FvH4_4g23092
malus_domestica MD13G1125600.v1.1
pyrus_communis pycom13g10960
rosa_chinensis RchiOBHm_Chr4g0429381
rosa_laevigata RLG00000007075
rosa_multiflora Rmu_sc0003708.1_g000022
rosa_roxburghii Rroxscaffold_5G00371020
rosa_rugosa Rorug04G0235400
rosa_samantha Rh4AG291300 Rh4CG312600 Rh4DG294100
rosa_wichuraiana Rw4G025220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 182
AccB7I CCANNNNNTGG 1 cut(s) 274
AccI GTMKAC 1 cut(s) 105
AciI CCGC 1 cut(s) 145
AclWI GGATC 2 cut(s) 310, 647
AcsI RAATTY 3 cut(s) 253, 293, 403
AfaI GTAC 2 cut(s) 356, 606
AfiI CCNNNNNNNGG 3 cut(s) 248, 274, 370
AgsI TTSAA 4 cut(s) 403, 542, 582, 621
AhdI GACNNNNNGTC 1 cut(s) 393
AhlI ACTAGT 1 cut(s) 476
AjnI CCWGG 1 cut(s) 86
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AluBI AGCT 4 cut(s) 129, 280, 345, 660
AluI AGCT 4 cut(s) 129, 280, 345, 660
Alw21I GWGCWC 1 cut(s) 662
Alw26I GTCTC 2 cut(s) 380, 465
AlwI GGATC 2 cut(s) 310, 647
Ama87I CYCGRG 1 cut(s) 9
ApoI RAATTY 3 cut(s) 253, 293, 403
Asp700I GAANNNNTTC 1 cut(s) 546
AspS9I GGNCC 3 cut(s) 205, 230, 446
AsuNHI GCTAGC 1 cut(s) 125
AvaI CYCGRG 1 cut(s) 9
AvaII GGWCC 3 cut(s) 205, 230, 446
BanII GRGCYC 1 cut(s) 662
Bbv12I GWGCWC 1 cut(s) 662
BccI CCATC 1 cut(s) 319
BciT130I CCWGG 1 cut(s) 88
BcoDI GTCTC 2 cut(s) 380, 465
BcuI ACTAGT 1 cut(s) 476
BfaI CTAG 3 cut(s) 126, 338, 477
BfuAI ACCTGC 1 cut(s) 182
Bme1390I CCNGG 1 cut(s) 88
Bme18I GGWCC 3 cut(s) 205, 230, 446
BmeRI GACNNNNNGTC 1 cut(s) 393
BmeT110I CYCGRG 1 cut(s) 9
BmgT120I GGNCC 3 cut(s) 205, 230, 446
BmiI GGNNCC 4 cut(s) 134, 164, 362, 601
BmrFI CCNGG 1 cut(s) 88
BmsI GCATC 1 cut(s) 56
BmtI GCTAGC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 465
BsaJI CCNNGG 2 cut(s) 208, 455
BsaWI WCCGGW 1 cut(s) 443
Bsc4I CCNNNNNNNGG 3 cut(s) 248, 274, 370
Bse1I ACTGG 3 cut(s) 362, 520, 527
Bse3DI GCAATG 1 cut(s) 220
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 2 cut(s) 208, 455
BseGI GGATG 1 cut(s) 580
BseLI CCNNNNNNNGG 3 cut(s) 248, 274, 370
BseMI GCAATG 1 cut(s) 220
BseNI ACTGG 3 cut(s) 362, 520, 527
BsgI GTGCAG 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 662
BsiHKCI CYCGRG 1 cut(s) 9
BsiSI CCGG 1 cut(s) 444
BslI CCNNNNNNNGG 3 cut(s) 248, 274, 370
BsmAI GTCTC 2 cut(s) 380, 465
Bso31I GGTCTC 1 cut(s) 465
BsoBI CYCGRG 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 662
Bsp143I GATC 2 cut(s) 302, 652
BspACI CCGC 1 cut(s) 145
BspLI GGNNCC 4 cut(s) 134, 164, 362, 601
BspMI ACCTGC 1 cut(s) 182
BspOI GCTAGC 1 cut(s) 129
BspPI GGATC 2 cut(s) 310, 647
BspTNI GGTCTC 1 cut(s) 465
BsrDI GCAATG 1 cut(s) 220
BsrI ACTGG 3 cut(s) 362, 520, 527
BssECI CCNNGG 2 cut(s) 208, 455
BssMI GATC 2 cut(s) 302, 652
BssT1I CCWWGG 2 cut(s) 208, 455
Bst2UI CCWGG 1 cut(s) 88
Bst4CI ACNGT 2 cut(s) 509, 604
BstAPI GCANNNNNTGC 1 cut(s) 153
BstC8I GCNNGC 2 cut(s) 127, 594
BstDEI CTNAG 1 cut(s) 668
BstF5I GGATG 1 cut(s) 580
BstKTI GATC 2 cut(s) 305, 655
BstMAI GTCTC 2 cut(s) 380, 465
BstMBI GATC 2 cut(s) 302, 652
BstMWI GCNNNNNNNGC 2 cut(s) 153, 564
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BstX2I RGATCY 2 cut(s) 302, 652
BstXI CCANNNNNNTGG 1 cut(s) 159
BstYI RGATCY 2 cut(s) 302, 652
BtsCI GGATG 1 cut(s) 580
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 42
BveI ACCTGC 1 cut(s) 182
Cac8I GCNNGC 2 cut(s) 127, 594
Cfr13I GGNCC 3 cut(s) 205, 230, 446
Csp6I GTAC 2 cut(s) 355, 605
CviAII CATG 1 cut(s) 153
CviJI RGCY 6 cut(s) 129, 202, 280, 345, 660, 672
CviKI_1 RGCY 6 cut(s) 129, 202, 280, 345, 660, 672
CviQI GTAC 2 cut(s) 355, 605
DdeI CTNAG 1 cut(s) 668
DpnI GATC 2 cut(s) 304, 654
DpnII GATC 2 cut(s) 302, 652
DriI GACNNNNNGTC 1 cut(s) 393
Eam1105I GACNNNNNGTC 1 cut(s) 393
Ecl136II GAGCTC 1 cut(s) 660
Eco130I CCWWGG 2 cut(s) 208, 455
Eco24I GRGCYC 1 cut(s) 662
Eco31I GGTCTC 1 cut(s) 465
Eco47I GGWCC 3 cut(s) 205, 230, 446
Eco53kI GAGCTC 1 cut(s) 660
Eco88I CYCGRG 1 cut(s) 9
EcoICRI GAGCTC 1 cut(s) 660
EcoO109I RGGNCCY 1 cut(s) 230
EcoRI GAATTC 1 cut(s) 403
EcoRII CCWGG 1 cut(s) 86
EcoT14I CCWWGG 2 cut(s) 208, 455
EcoT38I GRGCYC 1 cut(s) 662
ErhI CCWWGG 2 cut(s) 208, 455
FaeI CATG 1 cut(s) 156
FaiI YATR 4 cut(s) 98, 154, 283, 647
FatI CATG 1 cut(s) 152
FblI GTMKAC 1 cut(s) 105
FokI GGATG 1 cut(s) 587
FriOI GRGCYC 1 cut(s) 662
FspBI CTAG 3 cut(s) 126, 338, 477
HapII CCGG 1 cut(s) 444
Hin1II CATG 1 cut(s) 156
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HpaII CCGG 1 cut(s) 444
Hpy166II GTNNAC 3 cut(s) 106, 482, 607
Hpy188I TCNGA 3 cut(s) 316, 657, 664
Hpy188III TCNNGA 4 cut(s) 9, 228, 383, 490
Hpy8I GTNNAC 3 cut(s) 106, 482, 607
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 2 cut(s) 509, 604
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 5 cut(s) 35, 47, 177, 245, 632
HpyF10VI GCNNNNNNNGC 2 cut(s) 153, 564
HpyF3I CTNAG 1 cut(s) 668
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 1 cut(s) 156
Kzo9I GATC 2 cut(s) 302, 652
LmnI GCTCC 1 cut(s) 277
LweI GCATC 1 cut(s) 56
MaeI CTAG 3 cut(s) 126, 338, 477
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 6 cut(s) 59, 169, 193, 323, 395, 634
MalI GATC 2 cut(s) 304, 654
MboI GATC 2 cut(s) 302, 652
MflI RGATCY 2 cut(s) 302, 652
MhlI GDGCHC 1 cut(s) 662
MluCI AATT 8 cut(s) 253, 293, 378, 403, 469, 494, 616, 679
MnlI CCTC 4 cut(s) 200, 275, 414, 526
MroXI GAANNNNTTC 1 cut(s) 546
MseI TTAA 4 cut(s) 297, 329, 377, 497
MspI CCGG 1 cut(s) 444
MspR9I CCNGG 1 cut(s) 88
MvaI CCWGG 1 cut(s) 88
MwoI GCNNNNNNNGC 2 cut(s) 153, 564
NdeII GATC 2 cut(s) 302, 652
NheI GCTAGC 1 cut(s) 125
NlaIII CATG 1 cut(s) 156
NlaIV GGNNCC 4 cut(s) 134, 164, 362, 601
NmuCI GTSAC 2 cut(s) 323, 395
PaeR7I CTCGAG 1 cut(s) 9
PdmI GAANNNNTTC 1 cut(s) 546
PflFI GACNNNGTC 1 cut(s) 338
PflMI CCANNNNNTGG 1 cut(s) 274
PfoI TCCNGGA 1 cut(s) 86
PpuMI RGGWCCY 1 cut(s) 230
Psp124BI GAGCTC 1 cut(s) 662
Psp5II RGGWCCY 1 cut(s) 230
Psp6I CCWGG 1 cut(s) 86
PspGI CCWGG 1 cut(s) 86
PspN4I GGNNCC 4 cut(s) 134, 164, 362, 601
PspPI GGNCC 3 cut(s) 205, 230, 446
PspPPI RGGWCCY 1 cut(s) 230
PsuI RGATCY 2 cut(s) 302, 652
PsyI GACNNNGTC 1 cut(s) 338
RsaI GTAC 2 cut(s) 356, 606
RsaNI GTAC 2 cut(s) 355, 605
SacI GAGCTC 1 cut(s) 662
SalI GTCGAC 1 cut(s) 104
SaqAI TTAA 4 cut(s) 297, 329, 377, 497
Sau3AI GATC 2 cut(s) 302, 652
Sau96I GGNCC 3 cut(s) 205, 230, 446
ScrFI CCNGG 1 cut(s) 88
SduI GDGCHC 1 cut(s) 662
SfaNI GCATC 1 cut(s) 56
Sfr274I CTCGAG 1 cut(s) 9
SinI GGWCC 3 cut(s) 205, 230, 446
SlaI CTCGAG 1 cut(s) 9
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
SpeI ACTAGT 1 cut(s) 476
Sse9I AATT 8 cut(s) 253, 293, 378, 403, 469, 494, 616, 679
SsiI CCGC 1 cut(s) 145
SspMI CTAG 3 cut(s) 126, 338, 477
SstI GAGCTC 1 cut(s) 662
StyD4I CCNGG 1 cut(s) 86
StyI CCWWGG 2 cut(s) 208, 455
TaaI ACNGT 2 cut(s) 509, 604
TaiI ACGT 1 cut(s) 171
TaqI TCGA 2 cut(s) 10, 105
TasI AATT 8 cut(s) 253, 293, 378, 403, 469, 494, 616, 679
TatI WGTACW 1 cut(s) 354
Tru1I TTAA 4 cut(s) 297, 329, 377, 497
Tru9I TTAA 4 cut(s) 297, 329, 377, 497
TscAI CASTG 1 cut(s) 49
TseFI GTSAC 2 cut(s) 323, 395
Tsp45I GTSAC 2 cut(s) 323, 395
TspDTI ATGAA 1 cut(s) 396
TspRI CASTG 1 cut(s) 49
Tth111I GACNNNGTC 1 cut(s) 338
Van91I CCANNNNNTGG 1 cut(s) 274
VpaK11BI GGWCC 3 cut(s) 205, 230, 446
XapI RAATTY 3 cut(s) 253, 293, 403
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XhoI CTCGAG 1 cut(s) 9
XmiI GTMKAC 1 cut(s) 105
XmnI GAANNNNTTC 1 cut(s) 546
XspI CTAG 3 cut(s) 126, 338, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.