FvH4_4g23570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014595
Physical Location & Seq
Forward (+)
26020113 .. 26021349
1237 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23570.t1

Sequence Viewer

Length: 618 bp
ATGGAATCCAAGGATCAGAATGTGGAGCTGATTGACGAGGCGATCAGGAGGCTTTTGGAGGAGAGGAAAAGCAGAGGAGCCGCCGGGGAGAGCTTTTTCCAAGGCGAGGATGATAAAGACGACCACCTCCTCCTCTCCCGGTTGCTCTCTCAGTTGGAATCACTGAAAGAGGGGATTCATAAAGCCGAAGCTTTAACCGGACCGGGAGAGATAACAGCAGCAACCTCTGAAGGTGGTGGATTGGAGGCAAAAGATAGGAATGGCGGTGGTGGTGGTGGTGGTGAAGAATTTGACAAAGAGGAGATAGTGAAAGAGTTGAACAATTTGAAGAGACAAAACACCATCACGCATTGGCTTCTATCTGTGATGATAGTGCTGACTATAGCTTGGCAAGCCTCGGAGGTGACCATGCTCTTGAAAGTGAAGCATGGATTGAGTAACCCTTTCAGGTGCGTCGGGGGCCTGTTTTCGAGCTTGTTTTCAGGGGGTTCGGATCAAACTAGACAGAATGAGAAGCAAAAAAGCGATGCATTTTCTTCTCTCAAAATGCCTGAGCTCCCCTCTGTCACAGATGTTAGTATAAATGGTGAAAAACATCTTCATGCAACAAAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

22.42

Weight (kDa)

5.33

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014595)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27300
fragaria_vesca FvH4_4g23570
malus_domestica MD16G1121100.v1.1
prunus_persica Prupe.1G224100_v2.0.a1
pyrus_communis pycom13g10540 pycom16g10370
rosa_chinensis RchiOBHm_Chr4g0429971
rosa_laevigata RLG00000007016
rosa_multiflora Rmu_co8323629.1_g000001 Rmu_ssc0000150.1_g000037
rosa_roxburghii Rroxscaffold_5G00371800
rosa_rugosa Rorug04G0239800
rosa_samantha Rh4AG296200 Rh4BG302700 Rh4CG318200 Rh4DG300000
rosa_wichuraiana Rw4G025660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 81, 264
AclWI GGATC 2 cut(s) 21, 501
AcsI RAATTY 2 cut(s) 287, 611
AcuI CTGAAG 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 3 cut(s) 319, 328, 418
AluBI AGCT 6 cut(s) 28, 93, 191, 386, 474, 556
AluI AGCT 6 cut(s) 28, 93, 191, 386, 474, 556
Alw21I GWGCWC 1 cut(s) 558
Alw26I GTCTC 1 cut(s) 325
AlwI GGATC 2 cut(s) 21, 501
AoxI GGCC 1 cut(s) 460
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 2 cut(s) 287, 611
AspS9I GGNCC 2 cut(s) 200, 460
AsuC2I CCSGG 3 cut(s) 85, 139, 204
AsuHPI GGTGA 3 cut(s) 293, 415, 599
AvaII GGWCC 1 cut(s) 200
BanII GRGCYC 1 cut(s) 558
Bbv12I GWGCWC 1 cut(s) 558
BbvI GCAGC 1 cut(s) 230
BccI CCATC 1 cut(s) 350
BcnI CCSGG 3 cut(s) 85, 139, 204
BcoDI GTCTC 1 cut(s) 325
BfaI CTAG 1 cut(s) 501
BfmI CTRYAG 1 cut(s) 381
BisI GCNGC 2 cut(s) 81, 219
BlsI GCNGC 2 cut(s) 82, 220
Bme1390I CCNGG 3 cut(s) 85, 139, 204
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 2 cut(s) 200, 460
BmiI GGNNCC 2 cut(s) 79, 461
BmrFI CCNGG 3 cut(s) 85, 139, 204
BmsI GCATC 1 cut(s) 517
BplI GAGNNNNNCTC 2 cut(s) 545, 577
Bpu10I CCTNAGC 1 cut(s) 552
BpuMI CCSGG 3 cut(s) 85, 139, 204
BsaJI CCNNGG 4 cut(s) 9, 84, 100, 396
BsaWI WCCGGW 1 cut(s) 197
Bsc4I CCNNNNNNNGG 1 cut(s) 106
BseDI CCNNGG 4 cut(s) 9, 84, 100, 396
BseGI GGATG 1 cut(s) 115
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 2 cut(s) 164, 543
BseRI GAGGAG 5 cut(s) 74, 90, 119, 122, 314
BseXI GCAGC 1 cut(s) 230
BshFI GGCC 1 cut(s) 462
BsiHKAI GWGCWC 1 cut(s) 558
BsiSI CCGG 4 cut(s) 84, 139, 198, 203
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 325
BsnI GGCC 1 cut(s) 462
Bsp1286I GDGCHC 1 cut(s) 558
Bsp143I GATC 3 cut(s) 13, 42, 493
BspACI CCGC 2 cut(s) 81, 264
BspANI GGCC 1 cut(s) 462
BspCNI CTCAG 2 cut(s) 163, 544
BspLI GGNNCC 2 cut(s) 79, 461
BspPI GGATC 2 cut(s) 21, 501
BssECI CCNNGG 4 cut(s) 9, 84, 100, 396
BssMI GATC 3 cut(s) 13, 42, 493
BssT1I CCWWGG 2 cut(s) 9, 100
Bst6I CTCTTC 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 2 cut(s) 150, 552
BstEII GGTNACC 1 cut(s) 403
BstF5I GGATG 1 cut(s) 115
BstKTI GATC 3 cut(s) 16, 45, 496
BstMAI GTCTC 1 cut(s) 325
BstMBI GATC 3 cut(s) 13, 42, 493
BstMWI GCNNNNNNNGC 2 cut(s) 392, 459
BstPI GGTNACC 1 cut(s) 403
BstSCI CCNGG 3 cut(s) 83, 137, 202
BstSFI CTRYAG 1 cut(s) 381
BstV1I GCAGC 1 cut(s) 230
BsuRI GGCC 1 cut(s) 462
BtgZI GCGATG 1 cut(s) 540
BtsCI GGATG 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 393
Cfr13I GGNCC 2 cut(s) 200, 460
CpoI CGGWCCG 1 cut(s) 200
CseI GACGC 1 cut(s) 442
CspI CGGWCCG 1 cut(s) 200
CviAII CATG 3 cut(s) 409, 428, 602
DdeI CTNAG 2 cut(s) 150, 552
DpnI GATC 3 cut(s) 15, 44, 495
DpnII GATC 3 cut(s) 13, 42, 493
Eam1104I CTCTTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 323
Ecl136II GAGCTC 1 cut(s) 556
Eco130I CCWWGG 2 cut(s) 9, 100
Eco24I GRGCYC 1 cut(s) 558
Eco47I GGWCC 1 cut(s) 200
Eco53kI GAGCTC 1 cut(s) 556
Eco57I CTGAAG 1 cut(s) 249
Eco91I GGTNACC 1 cut(s) 403
EcoICRI GAGCTC 1 cut(s) 556
EcoO109I RGGNCCY 1 cut(s) 460
EcoO65I GGTNACC 1 cut(s) 403
EcoT14I CCWWGG 2 cut(s) 9, 100
EcoT22I ATGCAT 1 cut(s) 532
EcoT38I GRGCYC 1 cut(s) 558
ErhI CCWWGG 2 cut(s) 9, 100
FaeI CATG 3 cut(s) 412, 431, 605
FaiI YATR 6 cut(s) 180, 383, 410, 429, 581, 603
FatI CATG 3 cut(s) 408, 427, 601
Fnu4HI GCNGC 2 cut(s) 81, 219
FokI GGATG 1 cut(s) 122
FriOI GRGCYC 1 cut(s) 558
Fsp4HI GCNGC 2 cut(s) 81, 219
FspBI CTAG 1 cut(s) 501
GluI GCNGC 2 cut(s) 81, 219
HaeIII GGCC 1 cut(s) 462
HapII CCGG 4 cut(s) 84, 139, 198, 203
HgaI GACGC 1 cut(s) 442
Hin1II CATG 3 cut(s) 412, 431, 605
HindIII AAGCTT 1 cut(s) 189
HinfI GANTC 3 cut(s) 5, 158, 175
HpaII CCGG 4 cut(s) 84, 139, 198, 203
HphI GGTGA 3 cut(s) 293, 415, 599
Hpy188I TCNGA 4 cut(s) 18, 229, 400, 493
Hpy188III TCNNGA 2 cut(s) 46, 415
Hpy99I CGWCG 1 cut(s) 458
HpyAV CCTTC 1 cut(s) 224
HpyCH4V TGCA 2 cut(s) 530, 605
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 459
HpyF3I CTNAG 2 cut(s) 150, 552
Hsp92II CATG 3 cut(s) 412, 431, 605
Kzo9I GATC 3 cut(s) 13, 42, 493
LmnI GCTCC 3 cut(s) 25, 77, 561
LpnPI CCDG 9 cut(s) 31, 97, 152, 211, 216, 433, 468, 476, 564
Lsp1109I GCAGC 1 cut(s) 230
LweI GCATC 1 cut(s) 517
MaeI CTAG 1 cut(s) 501
MaeIII GTNAC 3 cut(s) 403, 437, 565
MalI GATC 3 cut(s) 15, 44, 495
MboI GATC 3 cut(s) 13, 42, 493
MboII GAAGA 4 cut(s) 296, 340, 528, 590
MhlI GDGCHC 1 cut(s) 558
MluCI AATT 3 cut(s) 287, 322, 611
MmeI TCCRAC 1 cut(s) 135
Mph1103I ATGCAT 1 cut(s) 532
MseI TTAA 1 cut(s) 194
MslI CAYNNNNRTG 1 cut(s) 600
MspI CCGG 4 cut(s) 84, 139, 198, 203
MspR9I CCNGG 3 cut(s) 85, 139, 204
MwoI GCNNNNNNNGC 2 cut(s) 392, 459
NciI CCSGG 3 cut(s) 85, 139, 204
NdeII GATC 3 cut(s) 13, 42, 493
NlaIII CATG 3 cut(s) 412, 431, 605
NlaIV GGNNCC 2 cut(s) 79, 461
NmuCI GTSAC 2 cut(s) 403, 565
NsiI ATGCAT 1 cut(s) 532
PfeI GAWTC 3 cut(s) 5, 158, 175
PkrI GCNGC 2 cut(s) 82, 220
Psp124BI GAGCTC 1 cut(s) 558
PspEI GGTNACC 1 cut(s) 403
PspN4I GGNNCC 2 cut(s) 79, 461
PspPI GGNCC 2 cut(s) 200, 460
RseI CAYNNNNRTG 1 cut(s) 600
Rsr2I CGGWCCG 1 cut(s) 200
RsrII CGGWCCG 1 cut(s) 200
SacI GAGCTC 1 cut(s) 558
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 2 cut(s) 81, 219
Sau3AI GATC 3 cut(s) 13, 42, 493
Sau96I GGNCC 2 cut(s) 200, 460
ScrFI CCNGG 3 cut(s) 85, 139, 204
SduI GDGCHC 1 cut(s) 558
SfaNI GCATC 1 cut(s) 517
SfcI CTRYAG 1 cut(s) 381
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 600
Sse9I AATT 3 cut(s) 287, 322, 611
SsiI CCGC 2 cut(s) 81, 264
SspMI CTAG 1 cut(s) 501
SstI GAGCTC 1 cut(s) 558
StyD4I CCNGG 3 cut(s) 83, 137, 202
StyI CCWWGG 2 cut(s) 9, 100
TaqI TCGA 1 cut(s) 470
TasI AATT 3 cut(s) 287, 322, 611
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 3 cut(s) 5, 158, 175
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 1 cut(s) 168
TseFI GTSAC 2 cut(s) 403, 565
TseI GCWGC 1 cut(s) 218
Tsp45I GTSAC 2 cut(s) 403, 565
TspDTI ATGAA 2 cut(s) 167, 590
TspRI CASTG 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 200
XapI RAATTY 2 cut(s) 287, 611
XspI CTAG 1 cut(s) 501
Zsp2I ATGCAT 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.