Prupe.1G224100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014595
Physical Location & Seq
Forward (+)
23785104 .. 23786453
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G224100.1

Sequence Viewer

Length: 594 bp
ATGGATTCGAAAGATGAAAACATGGAGCTGATTAACGAGGCCATCAAGAGGCTCTTAGAGGAGAGTAAAAACAGAGATGCCTCAGCTGATGATGATGACGACTGCCTCCTCCTCTCCCGATTGCTCTCTCAGGTAGAGTCGTTAAAAGGCAACGAGCGGCTTCAGAAACCCGAAGCTTTAACGAAACCGGGAGAGTTAACTTCCTCTGCAGATGGCGATCAATCGAAGCCGAAAAGAGAGAGTGGTGGTGACAACGCAGACGGAGATGACGGTGGCTCCGAGGAAATTGATAGAGAAGAGATAATCAAAGAACTTAACAAGGTGAAGAGACAGAACACGATCACCCACTGGCTTCTTTCCGTCATGATTGTGCTCACTGTTGCTTGGCAAGCCTCTGAGGTGACCCTTCTCTGGAAATTTAAAGATGGGTTGAGCCACCCGTTTAAATACTTTGGAGACATGCTCACAGGGAAAGGGGCAGGCAATGACTTAGAAGAACACAAAAAAGAGGCTCCTCCTCTCCCTGGTCTCAAAATTCCTGAGTTCCCTCACGTGGAGTTGCCAGATATGAGTCTAACTGGTGAACAGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

21.96

Weight (kDa)

4.71

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014595)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27300
fragaria_vesca FvH4_4g23570
malus_domestica MD16G1121100.v1.1
prunus_persica Prupe.1G224100_v2.0.a1
pyrus_communis pycom13g10540 pycom16g10370
rosa_chinensis RchiOBHm_Chr4g0429971
rosa_laevigata RLG00000007016
rosa_multiflora Rmu_co8323629.1_g000001 Rmu_ssc0000150.1_g000037
rosa_roxburghii Rroxscaffold_5G00371800
rosa_rugosa Rorug04G0239800
rosa_samantha Rh4AG296200 Rh4BG302700 Rh4CG318200 Rh4DG300000
rosa_wichuraiana Rw4G025660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 157
AciI CCGC 1 cut(s) 157
AcsI RAATTY 2 cut(s) 416, 534
AcuI CTGAAG 1 cut(s) 146
AcvI CACGTG 1 cut(s) 553
AfiI CCNNNNNNNGG 4 cut(s) 48, 411, 524, 553
AjnI CCWGG 1 cut(s) 523
AluBI AGCT 3 cut(s) 28, 86, 176
AluI AGCT 3 cut(s) 28, 86, 176
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 3 cut(s) 322, 450, 533
AoxI GGCC 1 cut(s) 39
ApoI RAATTY 2 cut(s) 416, 534
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 5 cut(s) 260, 334, 334, 412, 593
AsuII TTCGAA 1 cut(s) 8
BbrPI CACGTG 1 cut(s) 553
Bbv12I GWGCWC 1 cut(s) 375
BbvCI CCTCAGC 1 cut(s) 82
BccI CCATC 3 cut(s) 50, 206, 419
BciT130I CCWGG 1 cut(s) 525
BcnI CCSGG 1 cut(s) 189
BcoDI GTCTC 3 cut(s) 322, 450, 533
BfmI CTRYAG 1 cut(s) 207
BisI GCNGC 1 cut(s) 158
BlsI GCNGC 1 cut(s) 159
Bme1390I CCNGG 2 cut(s) 189, 525
BmiI GGNNCC 2 cut(s) 277, 513
BmrFI CCNGG 2 cut(s) 189, 525
BmsI GCATC 1 cut(s) 67
BplI GAGNNNNNCTC 2 cut(s) 447, 479
Bpu10I CCTNAGC 1 cut(s) 82
Bpu14I TTCGAA 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 189
BsaAI YACGTR 1 cut(s) 553
BsaBI GATNNNNATC 1 cut(s) 216
BsaI GGTCTC 1 cut(s) 533
BsaJI CCNNGG 2 cut(s) 279, 523
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bsc4I CCNNNNNNNGG 4 cut(s) 48, 411, 524, 553
Bse1I ACTGG 2 cut(s) 353, 583
Bse3DI GCAATG 1 cut(s) 490
Bse8I GATNNNNATC 1 cut(s) 216
BseBI CCWGG 1 cut(s) 525
BseDI CCNNGG 2 cut(s) 279, 523
BseJI GATNNNNATC 1 cut(s) 216
BseLI CCNNNNNNNGG 4 cut(s) 48, 411, 524, 553
BseMI GCAATG 1 cut(s) 490
BseMII CTCAG 4 cut(s) 96, 143, 387, 531
BseNI ACTGG 2 cut(s) 353, 583
BseRI GAGGAG 5 cut(s) 74, 98, 101, 504, 507
BshFI GGCC 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 375
BsiSI CCGG 1 cut(s) 188
BslI CCNNNNNNNGG 4 cut(s) 48, 411, 524, 553
BsmAI GTCTC 3 cut(s) 322, 450, 533
BsnI GGCC 1 cut(s) 41
Bso31I GGTCTC 1 cut(s) 533
Bsp119I TTCGAA 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 2 cut(s) 217, 339
BspACI CCGC 1 cut(s) 157
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 4 cut(s) 95, 142, 388, 532
BspHI TCATGA 1 cut(s) 363
BspLI GGNNCC 2 cut(s) 277, 513
BspMAI CTGCAG 1 cut(s) 211
BspT104I TTCGAA 1 cut(s) 8
BspTNI GGTCTC 1 cut(s) 533
BsrBI CCGCTC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 490
BsrI ACTGG 2 cut(s) 353, 583
BssECI CCNNGG 2 cut(s) 279, 523
BssMI GATC 2 cut(s) 217, 339
Bst2UI CCWGG 1 cut(s) 525
Bst4CI ACNGT 2 cut(s) 272, 379
Bst6I CTCTTC 2 cut(s) 291, 320
BstBAI YACGTR 1 cut(s) 553
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 390, 481
BstDEI CTNAG 6 cut(s) 55, 82, 129, 396, 490, 540
BstEII GGTNACC 1 cut(s) 400
BstKTI GATC 2 cut(s) 220, 342
BstMAI GTCTC 3 cut(s) 322, 450, 533
BstMBI GATC 2 cut(s) 217, 339
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstNI CCWGG 1 cut(s) 525
BstNSI RCATGY 1 cut(s) 463
BstPI GGTNACC 1 cut(s) 400
BstSCI CCNGG 2 cut(s) 187, 523
BstSFI CTRYAG 1 cut(s) 207
BsuRI GGCC 1 cut(s) 41
BtsIMutI CAGTG 2 cut(s) 346, 375
Cac8I GCNNGC 2 cut(s) 390, 481
CciI TCATGA 1 cut(s) 363
CviAII CATG 3 cut(s) 22, 364, 460
DdeI CTNAG 6 cut(s) 55, 82, 129, 396, 490, 540
DpnI GATC 2 cut(s) 219, 341
DpnII GATC 2 cut(s) 217, 339
DraI TTTAAA 2 cut(s) 421, 445
Eam1104I CTCTTC 2 cut(s) 291, 320
EarI CTCTTC 2 cut(s) 291, 320
Eco31I GGTCTC 1 cut(s) 533
Eco57I CTGAAG 1 cut(s) 146
Eco72I CACGTG 1 cut(s) 553
Eco91I GGTNACC 1 cut(s) 400
EcoO65I GGTNACC 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 523
FaeI CATG 3 cut(s) 25, 367, 463
FaiI YATR 4 cut(s) 23, 365, 461, 569
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FatI CATG 3 cut(s) 21, 363, 459
Fnu4HI GCNGC 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 158
GluI GCNGC 1 cut(s) 158
HaeIII GGCC 1 cut(s) 41
HapII CCGG 1 cut(s) 188
Hin1II CATG 3 cut(s) 25, 367, 463
HincII GTYRAC 1 cut(s) 198
HindII GTYRAC 1 cut(s) 198
HindIII AAGCTT 1 cut(s) 174
HinfI GANTC 3 cut(s) 5, 137, 571
HpaI GTTAAC 1 cut(s) 198
HpaII CCGG 1 cut(s) 188
HphI GGTGA 5 cut(s) 260, 334, 334, 412, 593
Hpy166II GTNNAC 2 cut(s) 198, 584
Hpy188I TCNGA 3 cut(s) 165, 280, 397
Hpy188III TCNNGA 5 cut(s) 46, 117, 364, 412, 539
Hpy8I GTNNAC 2 cut(s) 198, 584
HpyAV CCTTC 1 cut(s) 416
HpyCH4III ACNGT 2 cut(s) 272, 379
HpyCH4IV ACGT 1 cut(s) 552
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpyF3I CTNAG 6 cut(s) 55, 82, 129, 396, 490, 540
HpySE526I ACGT 1 cut(s) 552
Hsp92II CATG 3 cut(s) 25, 367, 463
KspAI GTTAAC 1 cut(s) 198
Kzo9I GATC 2 cut(s) 217, 339
LmnI GCTCC 3 cut(s) 25, 281, 517
LweI GCATC 1 cut(s) 67
MaeII ACGT 1 cut(s) 552
MaeIII GTNAC 2 cut(s) 248, 400
MalI GATC 2 cut(s) 219, 341
MbiI CCGCTC 1 cut(s) 157
MboI GATC 2 cut(s) 217, 339
MboII GAAGA 3 cut(s) 308, 337, 506
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 3 cut(s) 285, 416, 534
MlyI GAGTC 2 cut(s) 146, 580
MseI TTAA 7 cut(s) 33, 143, 179, 197, 315, 420, 444
MslI CAYNNNNRTG 1 cut(s) 368
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 2 cut(s) 189, 525
MvaI CCWGG 1 cut(s) 525
MwoI GCNNNNNNNGC 1 cut(s) 389
NciI CCSGG 1 cut(s) 189
NdeII GATC 2 cut(s) 217, 339
NlaIII CATG 3 cut(s) 25, 367, 463
NlaIV GGNNCC 2 cut(s) 277, 513
NmuCI GTSAC 2 cut(s) 248, 400
NspI RCATGY 1 cut(s) 463
NspV TTCGAA 1 cut(s) 8
PagI TCATGA 1 cut(s) 363
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 159
PleI GAGTC 2 cut(s) 145, 579
PmaCI CACGTG 1 cut(s) 553
PmlI CACGTG 1 cut(s) 553
PpsI GAGTC 2 cut(s) 145, 579
Ppu21I YACGTR 1 cut(s) 553
Psp6I CCWGG 1 cut(s) 523
PspCI CACGTG 1 cut(s) 553
PspEI GGTNACC 1 cut(s) 400
PspGI CCWGG 1 cut(s) 523
PspN4I GGNNCC 2 cut(s) 277, 513
PstI CTGCAG 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 86
RseI CAYNNNNRTG 1 cut(s) 368
SaqAI TTAA 7 cut(s) 33, 143, 179, 197, 315, 420, 444
SatI GCNGC 1 cut(s) 158
Sau3AI GATC 2 cut(s) 217, 339
SchI GAGTC 2 cut(s) 146, 580
ScrFI CCNGG 2 cut(s) 189, 525
SduI GDGCHC 1 cut(s) 375
SetI ASST 7 cut(s) 30, 88, 135, 178, 324, 402, 555
SfaNI GCATC 1 cut(s) 67
SfcI CTRYAG 1 cut(s) 207
SfuI TTCGAA 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 368
Sse9I AATT 3 cut(s) 285, 416, 534
SsiI CCGC 1 cut(s) 157
StyD4I CCNGG 2 cut(s) 187, 523
TaaI ACNGT 2 cut(s) 272, 379
TaiI ACGT 1 cut(s) 555
TaqI TCGA 2 cut(s) 8, 224
TasI AATT 3 cut(s) 285, 416, 534
TauI GCSGC 1 cut(s) 160
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 7 cut(s) 33, 143, 179, 197, 315, 420, 444
Tru9I TTAA 7 cut(s) 33, 143, 179, 197, 315, 420, 444
TscAI CASTG 2 cut(s) 353, 382
TseFI GTSAC 2 cut(s) 248, 400
Tsp45I GTSAC 2 cut(s) 248, 400
TspDTI ATGAA 1 cut(s) 30
TspGWI ACGGA 2 cut(s) 276, 349
TspRI CASTG 2 cut(s) 353, 382
XapI RAATTY 2 cut(s) 416, 534
XceI RCATGY 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.