RLG00000007016

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0014595
Physical Location & Seq
Reverse (-)
12693168 .. 12694623
1456 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007016

Sequence Viewer

Length: 825 bp
ATGGAATCCAAACATCAGAATGTGGAGCTGATTGACGAGGCAATCAAGAGGCTGTTGGAGGAGAGGAGAAACAACAGAGGAGCCTCCGGAGAGAGCTTTTCCCAAGGAGGCGACGACGAAGATAAAGACGACCGCCTCCTCCTCTCCCAATTGCTCTCTCAGTTGGAATCAGTGAAAGGCAATTCCGAGGAGATTCAGAAAGCCGAAGCTTCAAACGAACCGGGAGAGGTAACAGCAACCTCTGAAGATGGTGAATTGGAGGCGAAAGATAAGAAGGGTGGCGGTGAAGAATTTGACAAAGAAGAGGAGATAGTGAAAGAATTGAAAAATTTGAAGAGACAGAACACCATCACTCACTGGCTTCTTTCTGCGTTGGTAGTGCTGACTATAGCTTGGCAAGCCTCAGAGGGGGTTCGGATCAAAATGGACAGGATCAGAAGCGAAAAAGCGATGCACTACCTTCTTTCAAAATCCCTGAACTTCCCCCTGTGGAATTACCAGATATTGGCTCAAACGGCGAAAAACATTGAGGGGGCTGTTCACCAGGAAGTTGGAGCGCCGCTGACAAAGACGAGCATGCCATCGCCAGCGGATGGCTGGCAATCCACGGTGCTGATGTGGTGCCAGCATTGCTGGAAAGGGAGGCCGGTGAGCTTGGCTTGTGACCCTTGGATCTCTTCACCTTCAAAAGTCAGCAGAGTGGTATTGGCAGGCACCCTAAAGCTCCACGGTTCGTGTCAAACACCGAGTATTAATGATCCACGAACGCTTTCGCCACCGTCCACACCAGCCGCAGCTCCTGATCGCCGCCTTAACGCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

30.36

Weight (kDa)

5.64

Isoelectric Point (pI)

59.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014595)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27300
fragaria_vesca FvH4_4g23570
malus_domestica MD16G1121100.v1.1
prunus_persica Prupe.1G224100_v2.0.a1
pyrus_communis pycom13g10540 pycom16g10370
rosa_chinensis RchiOBHm_Chr4g0429971
rosa_laevigata RLG00000007016
rosa_multiflora Rmu_co8323629.1_g000001 Rmu_ssc0000150.1_g000037
rosa_roxburghii Rroxscaffold_5G00371800
rosa_rugosa Rorug04G0239800
rosa_samantha Rh4AG296200 Rh4BG302700 Rh4CG318200 Rh4DG300000
rosa_wichuraiana Rw4G025660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 621, 713
AccB7I CCANNNNNTGG 2 cut(s) 505, 593
AccIII TCCGGA 1 cut(s) 86
AciI CCGC 6 cut(s) 133, 282, 560, 590, 792, 808
AclWI GGATC 4 cut(s) 425, 440, 680, 752
AcsI RAATTY 2 cut(s) 290, 328
AcuI CTGAAG 1 cut(s) 264
AfiI CCNNNNNNNGG 3 cut(s) 408, 505, 593
AgsI TTSAA 5 cut(s) 213, 325, 334, 468, 687
AjnI CCWGG 1 cut(s) 543
AluBI AGCT 7 cut(s) 28, 96, 209, 392, 654, 724, 797
AluI AGCT 7 cut(s) 28, 96, 209, 392, 654, 724, 797
Alw26I GTCTC 1 cut(s) 331
AlwI GGATC 4 cut(s) 425, 440, 680, 752
AlwNI CAGNNNCTG 1 cut(s) 800
Aor13HI TCCGGA 1 cut(s) 86
AoxI GGCC 1 cut(s) 644
ApeKI GCWGC 1 cut(s) 794
ApoI RAATTY 2 cut(s) 290, 328
AseI ATTAAT 1 cut(s) 753
Asp700I GAANNNNTTC 1 cut(s) 769
AspLEI GCGC 1 cut(s) 559
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 5 cut(s) 263, 296, 533, 661, 672
BanI GGYRCC 2 cut(s) 621, 713
BbvI GCAGC 1 cut(s) 806
BccI CCATC 4 cut(s) 242, 356, 587, 589
BceAI ACGGC 1 cut(s) 531
BciT130I CCWGG 1 cut(s) 545
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 331
BfmI CTRYAG 1 cut(s) 387
BfoI RGCGCY 1 cut(s) 560
BisI GCNGC 4 cut(s) 560, 792, 795, 808
BlsI GCNGC 4 cut(s) 561, 793, 796, 809
Bme1390I CCNGG 2 cut(s) 222, 545
BmiI GGNNCC 3 cut(s) 82, 623, 715
BmrFI CCNGG 2 cut(s) 222, 545
BmsI GCATC 1 cut(s) 441
BpuMI CCSGG 1 cut(s) 222
BsaJI CCNNGG 5 cut(s) 103, 186, 606, 668, 727
BsaWI WCCGGW 1 cut(s) 86
Bsc4I CCNNNNNNNGG 3 cut(s) 408, 505, 593
Bse118I RCCGGY 1 cut(s) 646
Bse1I ACTGG 1 cut(s) 362
Bse3DI GCAATG 1 cut(s) 628
BseAI TCCGGA 1 cut(s) 86
BseBI CCWGG 1 cut(s) 545
BseDI CCNNGG 5 cut(s) 103, 186, 606, 668, 727
BseGI GGATG 1 cut(s) 598
BseLI CCNNNNNNNGG 3 cut(s) 408, 505, 593
BseMI GCAATG 1 cut(s) 628
BseMII CTCAG 2 cut(s) 173, 417
BseNI ACTGG 1 cut(s) 362
BseRI GAGGAG 7 cut(s) 74, 79, 93, 128, 131, 203, 320
BseXI GCAGC 1 cut(s) 806
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 1 cut(s) 646
BshNI GGYRCC 2 cut(s) 621, 713
BsiEI CGRYCG 1 cut(s) 133
BsiSI CCGG 3 cut(s) 87, 221, 647
BslI CCNNNNNNNGG 3 cut(s) 408, 505, 593
BsmAI GTCTC 1 cut(s) 331
BsnI GGCC 1 cut(s) 646
Bsp13I TCCGGA 1 cut(s) 86
Bsp143I GATC 5 cut(s) 417, 432, 672, 757, 802
BspACI CCGC 6 cut(s) 133, 282, 560, 590, 792, 808
BspANI GGCC 1 cut(s) 646
BspCNI CTCAG 2 cut(s) 172, 416
BspEI TCCGGA 1 cut(s) 86
BspLI GGNNCC 3 cut(s) 82, 623, 715
BspPI GGATC 4 cut(s) 425, 440, 680, 752
BspT107I GGYRCC 2 cut(s) 621, 713
BsrDI GCAATG 1 cut(s) 628
BsrFI RCCGGY 1 cut(s) 646
BsrI ACTGG 1 cut(s) 362
BssAI RCCGGY 1 cut(s) 646
BssECI CCNNGG 5 cut(s) 103, 186, 606, 668, 727
BssMI GATC 5 cut(s) 417, 432, 672, 757, 802
BssT1I CCWWGG 2 cut(s) 103, 668
Bst2UI CCWGG 1 cut(s) 545
Bst4CI ACNGT 3 cut(s) 610, 731, 780
Bst6I CTCTTC 3 cut(s) 297, 329, 682
BstC8I GCNNGC 6 cut(s) 399, 578, 588, 599, 626, 712
BstDEI CTNAG 2 cut(s) 159, 403
BstDSI CCRYGG 2 cut(s) 606, 727
BstF5I GGATG 1 cut(s) 598
BstH2I RGCGCY 1 cut(s) 560
BstHHI GCGC 1 cut(s) 559
BstKTI GATC 5 cut(s) 420, 435, 675, 760, 805
BstMAI GTCTC 1 cut(s) 331
BstMBI GATC 5 cut(s) 417, 432, 672, 757, 802
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 3 cut(s) 398, 515, 630
BstNI CCWGG 1 cut(s) 545
BstNSI RCATGY 1 cut(s) 580
BstSCI CCNGG 2 cut(s) 220, 543
BstSFI CTRYAG 1 cut(s) 387
BstV1I GCAGC 1 cut(s) 806
BstX2I RGATCY 1 cut(s) 672
BstXI CCANNNNNNTGG 1 cut(s) 551
BstYI RGATCY 1 cut(s) 672
BsuRI GGCC 1 cut(s) 646
BtgI CCRYGG 2 cut(s) 606, 727
BtgZI GCGATG 2 cut(s) 464, 567
BtsCI GGATG 1 cut(s) 598
BtsIMutI CAGTG 2 cut(s) 177, 355
Cac8I GCNNGC 6 cut(s) 399, 578, 588, 599, 626, 712
CaiI CAGNNNCTG 1 cut(s) 800
CfoI GCGC 1 cut(s) 559
Cfr10I RCCGGY 1 cut(s) 646
CviAII CATG 1 cut(s) 577
DdeI CTNAG 2 cut(s) 159, 403
DpnI GATC 5 cut(s) 419, 434, 674, 759, 804
DpnII GATC 5 cut(s) 417, 432, 672, 757, 802
Eam1104I CTCTTC 3 cut(s) 297, 329, 682
EarI CTCTTC 3 cut(s) 297, 329, 682
Eco130I CCWWGG 2 cut(s) 103, 668
Eco57I CTGAAG 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 543
EcoT14I CCWWGG 2 cut(s) 103, 668
ErhI CCWWGG 2 cut(s) 103, 668
FaeI CATG 1 cut(s) 580
FaiI YATR 2 cut(s) 389, 578
FatI CATG 1 cut(s) 576
Fnu4HI GCNGC 4 cut(s) 560, 792, 795, 808
FokI GGATG 1 cut(s) 605
Fsp4HI GCNGC 4 cut(s) 560, 792, 795, 808
GlaI GCGC 1 cut(s) 558
GluI GCNGC 4 cut(s) 560, 792, 795, 808
HaeII RGCGCY 1 cut(s) 560
HaeIII GGCC 1 cut(s) 646
HapII CCGG 3 cut(s) 87, 221, 647
HhaI GCGC 1 cut(s) 559
Hin1II CATG 1 cut(s) 580
Hin6I GCGC 1 cut(s) 557
HinP1I GCGC 1 cut(s) 557
HindIII AAGCTT 1 cut(s) 207
HinfI GANTC 3 cut(s) 5, 167, 193
HpaII CCGG 3 cut(s) 87, 221, 647
HphI GGTGA 5 cut(s) 263, 296, 533, 661, 672
Hpy166II GTNNAC 2 cut(s) 541, 783
Hpy188I TCNGA 7 cut(s) 18, 187, 198, 244, 406, 417, 437
Hpy188III TCNNGA 3 cut(s) 46, 87, 800
Hpy8I GTNNAC 2 cut(s) 541, 783
Hpy99I CGWCG 2 cut(s) 116, 119
HpyAV CCTTC 3 cut(s) 268, 470, 693
HpyCH4III ACNGT 3 cut(s) 610, 731, 780
HpyCH4V TGCA 1 cut(s) 454
HpyF10VI GCNNNNNNNGC 3 cut(s) 398, 515, 630
HpyF3I CTNAG 2 cut(s) 159, 403
Hsp92II CATG 1 cut(s) 580
HspAI GCGC 1 cut(s) 557
Kpn2I TCCGGA 1 cut(s) 86
Kzo9I GATC 5 cut(s) 417, 432, 672, 757, 802
LmnI GCTCC 5 cut(s) 25, 80, 554, 729, 802
Lsp1109I GCAGC 1 cut(s) 806
LweI GCATC 1 cut(s) 441
MaeIII GTNAC 2 cut(s) 229, 662
MalI GATC 5 cut(s) 419, 434, 674, 759, 804
MboI GATC 5 cut(s) 417, 432, 672, 757, 802
MboII GAAGA 6 cut(s) 131, 257, 299, 314, 346, 669
MfeI CAATTG 1 cut(s) 149
MflI RGATCY 1 cut(s) 672
MluCI AATT 7 cut(s) 149, 181, 254, 290, 320, 328, 493
MmeI TCCRAC 3 cut(s) 36, 144, 532
MroI TCCGGA 1 cut(s) 86
MroXI GAANNNNTTC 1 cut(s) 769
MseI TTAA 2 cut(s) 753, 813
MslI CAYNNNNRTG 1 cut(s) 18
MspA1I CMGCKG 2 cut(s) 562, 590
MspI CCGG 3 cut(s) 87, 221, 647
MspR9I CCNGG 2 cut(s) 222, 545
MunI CAATTG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 545
MwoI GCNNNNNNNGC 3 cut(s) 398, 515, 630
NciI CCSGG 1 cut(s) 222
NdeII GATC 5 cut(s) 417, 432, 672, 757, 802
NlaIII CATG 1 cut(s) 580
NlaIV GGNNCC 3 cut(s) 82, 623, 715
NmuCI GTSAC 1 cut(s) 662
NspI RCATGY 1 cut(s) 580
PaeI GCATGC 1 cut(s) 580
PdmI GAANNNNTTC 1 cut(s) 769
PfeI GAWTC 3 cut(s) 5, 167, 193
PflMI CCANNNNNTGG 2 cut(s) 505, 593
PkrI GCNGC 4 cut(s) 561, 793, 796, 809
PshBI ATTAAT 1 cut(s) 753
Psp6I CCWGG 1 cut(s) 543
PspGI CCWGG 1 cut(s) 543
PspN4I GGNNCC 3 cut(s) 82, 623, 715
PstNI CAGNNNCTG 1 cut(s) 800
PsuI RGATCY 1 cut(s) 672
RseI CAYNNNNRTG 1 cut(s) 18
SaqAI TTAA 2 cut(s) 753, 813
SatI GCNGC 4 cut(s) 560, 792, 795, 808
Sau3AI GATC 5 cut(s) 417, 432, 672, 757, 802
ScrFI CCNGG 2 cut(s) 222, 545
SfaNI GCATC 1 cut(s) 441
SfcI CTRYAG 1 cut(s) 387
SmiMI CAYNNNNRTG 1 cut(s) 18
SphI GCATGC 1 cut(s) 580
Sse9I AATT 7 cut(s) 149, 181, 254, 290, 320, 328, 493
SsiI CCGC 6 cut(s) 133, 282, 560, 590, 792, 808
StyD4I CCNGG 2 cut(s) 220, 543
StyI CCWWGG 2 cut(s) 103, 668
TaaI ACNGT 3 cut(s) 610, 731, 780
TasI AATT 7 cut(s) 149, 181, 254, 290, 320, 328, 493
TauI GCSGC 3 cut(s) 562, 794, 810
TfiI GAWTC 3 cut(s) 5, 167, 193
Tru1I TTAA 2 cut(s) 753, 813
Tru9I TTAA 2 cut(s) 753, 813
TscAI CASTG 2 cut(s) 177, 362
TseFI GTSAC 1 cut(s) 662
TseI GCWGC 1 cut(s) 794
Tsp45I GTSAC 1 cut(s) 662
TspRI CASTG 2 cut(s) 177, 362
Van91I CCANNNNNTGG 2 cut(s) 505, 593
VspI ATTAAT 1 cut(s) 753
XapI RAATTY 2 cut(s) 290, 328
XceI RCATGY 1 cut(s) 580
XcmI CCANNNNNNNNNTGG 1 cut(s) 594
XmnI GAANNNNTTC 1 cut(s) 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.