Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0014595

Physical Location & Seq

Genomic Coordinates Reverse (-)

7060469 .. 7061399

Gene Structure 931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g10540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGATTCGAAAGATGAAAACTTGGAGCTGATCAACGTGGCAATCAAGAGGCTCTTAGAGGAGAGCAAATACAGCGAAGCCTCCTCCGCTGACAGCGTTTTCCAAGGCGGTGAAGATGATGATAAAGATGAGGACCGCCGCCTCCTCCACCGATTGCTCTCTCAGTTGGAGTCATTGAAAGCTAATGACGGGATTCAACCACCCAAATCTTCAACCAAACCCTCCGCAGACGGGGAATTGGAGCCGCAAAGAGAGGGCAGTGGCAGAGTGGATGGGGATGATGGCGGTGGGGCTGAAACTGATACGGAACGAATTGTGAAAGAACTAAACAAGGTGCAGAAACAGAACAGCGTCATTCAGTGGCTGCTTTCGGTCATGATTGTGCTTACTGTCGCCTGGCAAGCCTCTGAGATGACTATGATTTGGAAACTCAAAGACGGAATCAGAAACCCCTTTCGATGGATAGGAGGGATGCTGAAGGAGAAGAAGGACTCGGAAGAACACCACCGGAGTGAGTCTGCTTCTCTTCCTTTCCCTCAAGATGAGTCTCCTTCTCCTCCCTTCCCTCAAAATACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

193

Amino Acids

21.52

Weight (kDa)

4.77

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27300
fragaria_vesca	FvH4_4g23570
malus_domestica	MD16G1121100.v1.1
prunus_persica	Prupe.1G224100_v2.0.a1
pyrus_communis	pycom13g10540 pycom16g10370
rosa_chinensis	RchiOBHm_Chr4g0429971
rosa_laevigata	RLG00000007016
rosa_multiflora	Rmu_co8323629.1_g000001 Rmu_ssc0000150.1_g000037
rosa_roxburghii	Rroxscaffold_5G00371800
rosa_rugosa	Rorug04G0239800
rosa_samantha	Rh4AG296200 Rh4BG302700 Rh4CG318200 Rh4DG300000
rosa_wichuraiana	Rw4G025660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	87, 108, 136, 139, 225, 245, 285
AcuI	CTGAAG	1 cut(s)	497
AfiI	CCNNNNNNNGG	2 cut(s)	231, 459
AgsI	TTSAA	3 cut(s)	178, 197, 213
AjnI	CCWGG	1 cut(s)	395
AleI	CACNNNNGTG	1 cut(s)	510
AluBI	AGCT	2 cut(s)	28, 182
AluI	AGCT	2 cut(s)	28, 182
Alw26I	GTCTC	1 cut(s)	552
AlwNI	CAGNNNCTG	1 cut(s)	364
ApeKI	GCWGC	1 cut(s)	364
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	1 cut(s)	122
AsuII	TTCGAA	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	351
BccI	CCATC	3 cut(s)	266, 275, 453
BciT130I	CCWGG	1 cut(s)	397
BclI	TGATCA	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	552
BisI	GCNGC	3 cut(s)	139, 245, 365
BlsI	GCNGC	3 cut(s)	140, 246, 366
Bme1390I	CCNGG	1 cut(s)	397
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	397
BmsI	GCATC	1 cut(s)	462
Bpu14I	TTCGAA	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	522
BsaJI	CCNNGG	1 cut(s)	103
BsaWI	WCCGGW	1 cut(s)	507
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 459
BseBI	CCWGG	1 cut(s)	397
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	3 cut(s)	277, 283, 477
BseLI	CCNNNNNNNGG	2 cut(s)	231, 459
BseMII	CTCAG	2 cut(s)	176, 399
BseRI	GAGGAG	4 cut(s)	73, 74, 134, 546
BseXI	GCAGC	1 cut(s)	351
BsgI	GTGCAG	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	508
BslI	CCNNNNNNNGG	2 cut(s)	231, 459
BsmAI	GTCTC	1 cut(s)	552
Bsp119I	TTCGAA	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	7 cut(s)	87, 108, 136, 139, 225, 245, 285
BspCNI	CTCAG	2 cut(s)	175, 400
BspHI	TCATGA	1 cut(s)	375
BspLI	GGNNCC	1 cut(s)	243
BspT104I	TTCGAA	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	397
Bst4CI	ACNGT	1 cut(s)	391
Bst6I	CTCTTC	1 cut(s)	531
BstBI	TTCGAA	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	3 cut(s)	55, 162, 408
BstF5I	GGATG	3 cut(s)	277, 283, 477
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	552
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 86, 401
BstNI	CCWGG	1 cut(s)	397
BstSCI	CCNGG	1 cut(s)	395
BstV1I	GCAGC	1 cut(s)	351
BtsCI	GGATG	3 cut(s)	277, 283, 477
BtsI	GCAGTG	1 cut(s)	265
BtsIMutI	CAGTG	2 cut(s)	265, 365
Cac8I	GCNNGC	1 cut(s)	402
CaiI	CAGNNNCTG	1 cut(s)	364
CciI	TCATGA	1 cut(s)	375
Cfr13I	GGNCC	1 cut(s)	133
CseI	GACGC	1 cut(s)	340
CviAII	CATG	1 cut(s)	376
CviJI	RGCY	8 cut(s)	28, 52, 80, 182, 244, 293, 364, 404
CviKI_1	RGCY	8 cut(s)	28, 52, 80, 182, 244, 293, 364, 404
DdeI	CTNAG	3 cut(s)	55, 162, 408
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Eco130I	CCWWGG	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	395
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	1 cut(s)	379
FaiI	YATR	2 cut(s)	377, 419
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FatI	CATG	1 cut(s)	375
FbaI	TGATCA	1 cut(s)	30
Fnu4HI	GCNGC	3 cut(s)	139, 245, 365
FokI	GGATG	3 cut(s)	284, 290, 484
Fsp4HI	GCNGC	3 cut(s)	139, 245, 365
GluI	GCNGC	3 cut(s)	139, 245, 365
HapII	CCGG	1 cut(s)	508
HgaI	GACGC	1 cut(s)	340
Hin1II	CATG	1 cut(s)	379
HinfI	GANTC	7 cut(s)	5, 170, 193, 441, 491, 515, 545
HpaII	CCGG	1 cut(s)	508
HphI	GGTGA	1 cut(s)	122
Hpy188I	TCNGA	3 cut(s)	409, 446, 496
Hpy188III	TCNNGA	3 cut(s)	46, 376, 539
HpyAV	CCTTC	4 cut(s)	472, 481, 561, 571
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	1 cut(s)	337
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 86, 401
HpyF3I	CTNAG	3 cut(s)	55, 162, 408
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	379
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	2 cut(s)	25, 241
LpnPI	CCDG	3 cut(s)	382, 409, 521
Lsp1109I	GCAGC	1 cut(s)	351
LweI	GCATC	1 cut(s)	462
MaeII	ACGT	1 cut(s)	36
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	5 cut(s)	125, 201, 496, 509, 518
MluCI	AATT	2 cut(s)	236, 312
MlyI	GAGTC	4 cut(s)	179, 485, 524, 554
MmeI	TCCRAC	1 cut(s)	147
MslI	CAYNNNNRTG	2 cut(s)	380, 510
MspA1I	CMGCKG	1 cut(s)	89
MspI	CCGG	1 cut(s)	508
MspR9I	CCNGG	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	397
MwoI	GCNNNNNNNGC	3 cut(s)	72, 86, 401
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	1 cut(s)	243
NspV	TTCGAA	1 cut(s)	8
OliI	CACNNNNGTG	1 cut(s)	510
PagI	TCATGA	1 cut(s)	375
PfeI	GAWTC	3 cut(s)	5, 193, 441
PkrI	GCNGC	3 cut(s)	140, 246, 366
PleI	GAGTC	4 cut(s)	178, 485, 523, 553
PpsI	GAGTC	4 cut(s)	178, 485, 523, 553
Psp6I	CCWGG	1 cut(s)	395
PspGI	CCWGG	1 cut(s)	395
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	133
PstNI	CAGNNNCTG	1 cut(s)	364
RseI	CAYNNNNRTG	2 cut(s)	380, 510
SatI	GCNGC	3 cut(s)	139, 245, 365
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	1 cut(s)	133
SchI	GAGTC	4 cut(s)	179, 485, 524, 554
ScrFI	CCNGG	1 cut(s)	397
SetI	ASST	5 cut(s)	30, 39, 184, 336, 578
SfaNI	GCATC	1 cut(s)	462
SfuI	TTCGAA	1 cut(s)	8
SinI	GGWCC	1 cut(s)	133
SmiMI	CAYNNNNRTG	2 cut(s)	380, 510
SmlI	CTYRAG	1 cut(s)	537
SmoI	CTYRAG	1 cut(s)	537
Sse9I	AATT	2 cut(s)	236, 312
SsiI	CCGC	7 cut(s)	87, 108, 136, 139, 225, 245, 285
StyD4I	CCNGG	1 cut(s)	395
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	8, 457
TaqII	GACCGA	1 cut(s)	361
TasI	AATT	2 cut(s)	236, 312
TauI	GCSGC	2 cut(s)	141, 247
TfiI	GAWTC	3 cut(s)	5, 193, 441
TscAI	CASTG	2 cut(s)	265, 365
TseI	GCWGC	1 cut(s)	364
TspDTI	ATGAA	1 cut(s)	30
TspGWI	ACGGA	2 cut(s)	320, 453
TspRI	CASTG	2 cut(s)	265, 365
VpaK11BI	GGWCC	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.