Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0014595

Physical Location & Seq

Genomic Coordinates Reverse (-)

7063213 .. 7064116

Gene Structure 904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g10370.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGATTCGAAAGATGAGAACATGGAGCTGATAAATGAGGCAATCAAGAGGCTCTTAGAGGAGAGGAAAAACAGTAAATCCTCCGCCGGCGAGGGCGTTTCCCAAGATGGTGGTGATGACGATGATAAAGATGAGGACCGCCTCCTCCTCCACCGATTGCTCTCCCAGTTGGAATCATTAAAAGGCAATGGCGAGCTTCGGAACTCGGAAACTTCAACCAAAACGGAAGAGGAAACGTCCTCTAAAGACGGCGAATTGAAGCCGGAAAATGAGAGTTGTGGCAAAGCAGATGGCGGTGGGGCTGAAATTGATACGGAAAAAATTGTGAGAGAAGTAAACAAGGTGAAGAAACAGAACAGCATCACTCACTGGCTGCTTTCTATCATGATTGTGCTCACTGTCGCCTGGCAAGCCTCTGAGGCGACTTTCCTTTGGAAACTCAACGAGGGATTCAGACACCCCTTTCGATGCATCGGAGGGATGCTGACGGGGAACGGGAAGGACTCGGAAGAACGCCACCGGGGTGAGTCTCCTTCTCTTCCTTCACTCCAAATACCTGAGTTCCCCTTGCCAGATATTAGTCTAAGTGAAAAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

200

Amino Acids

22.17

Weight (kDa)

4.91

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27300
fragaria_vesca	FvH4_4g23570
malus_domestica	MD16G1121100.v1.1
prunus_persica	Prupe.1G224100_v2.0.a1
pyrus_communis	pycom13g10540 pycom16g10370
rosa_chinensis	RchiOBHm_Chr4g0429971
rosa_laevigata	RLG00000007016
rosa_multiflora	Rmu_co8323629.1_g000001 Rmu_ssc0000150.1_g000037
rosa_roxburghii	Rroxscaffold_5G00371800
rosa_rugosa	Rorug04G0239800
rosa_samantha	Rh4AG296200 Rh4BG302700 Rh4CG318200 Rh4DG300000
rosa_wichuraiana	Rw4G025660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	84, 139, 294
AgsI	TTSAA	2 cut(s)	216, 259
AjnI	CCWGG	1 cut(s)	404
AleI	CACNNNNGTG	1 cut(s)	522
AluBI	AGCT	2 cut(s)	28, 196
AluI	AGCT	2 cut(s)	28, 196
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	1 cut(s)	534
ApeKI	GCWGC	1 cut(s)	373
ArsI	GACNNNNNNTTYG	2 cut(s)	447, 479
AspS9I	GGNCC	1 cut(s)	136
AsuC2I	CCSGG	1 cut(s)	521
AsuHPI	GGTGA	3 cut(s)	125, 355, 536
AsuII	TTCGAA	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	1 cut(s)	360
BccI	CCATC	2 cut(s)	101, 284
BceAI	ACGGC	1 cut(s)	265
BciT130I	CCWGG	1 cut(s)	406
BcnI	CCSGG	1 cut(s)	521
BcoDI	GTCTC	1 cut(s)	534
BglI	GCCNNNNNGGC	1 cut(s)	419
BisI	GCNGC	1 cut(s)	374
BlsI	GCNGC	1 cut(s)	375
Bme1390I	CCNGG	2 cut(s)	406, 521
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	136
BmrFI	CCNGG	2 cut(s)	406, 521
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	4 cut(s)	369, 458, 471, 480
BmuI	ACTGGG	1 cut(s)	160
Bpu14I	TTCGAA	1 cut(s)	8
BpuMI	CCSGG	1 cut(s)	521
BsaJI	CCNNGG	1 cut(s)	520
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	2 cut(s)	166, 374
Bse3DI	GCAATG	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	406
BseDI	CCNNGG	1 cut(s)	520
BseGI	GGATG	1 cut(s)	486
BseMI	GCAATG	1 cut(s)	193
BseMII	CTCAG	2 cut(s)	408, 549
BseNI	ACTGG	2 cut(s)	166, 374
BseRI	GAGGAG	3 cut(s)	74, 134, 137
BseXI	GCAGC	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	3 cut(s)	87, 263, 520
BsmAI	GTCTC	1 cut(s)	534
Bsp119I	TTCGAA	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	396
BspACI	CCGC	3 cut(s)	84, 139, 294
BspCNI	CTCAG	2 cut(s)	409, 550
BspHI	TCATGA	1 cut(s)	384
BspT104I	TTCGAA	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	2 cut(s)	166, 374
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	520
Bst2UI	CCWGG	1 cut(s)	406
Bst4CI	ACNGT	2 cut(s)	74, 400
Bst6I	CTCTTC	2 cut(s)	222, 543
BstBI	TTCGAA	1 cut(s)	8
BstC8I	GCNNGC	3 cut(s)	88, 194, 411
BstDEI	CTNAG	4 cut(s)	55, 417, 558, 584
BstF5I	GGATG	1 cut(s)	486
BstMAI	GTCTC	1 cut(s)	534
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 419
BstNI	CCWGG	1 cut(s)	406
BstSCI	CCNGG	2 cut(s)	404, 519
BstV1I	GCAGC	1 cut(s)	360
BstXI	CCANNNNNNTGG	1 cut(s)	110
BtsCI	GGATG	1 cut(s)	486
BtsIMutI	CAGTG	2 cut(s)	367, 396
Cac8I	GCNNGC	3 cut(s)	88, 194, 411
CciI	TCATGA	1 cut(s)	384
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	136
CviAII	CATG	2 cut(s)	22, 385
CviJI	RGCY	7 cut(s)	28, 52, 196, 262, 302, 373, 413
CviKI_1	RGCY	7 cut(s)	28, 52, 196, 262, 302, 373, 413
DdeI	CTNAG	4 cut(s)	55, 417, 558, 584
Eam1104I	CTCTTC	2 cut(s)	222, 543
EarI	CTCTTC	2 cut(s)	222, 543
EciI	GGCGGA	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	404
EcoT22I	ATGCAT	1 cut(s)	473
FaeI	CATG	2 cut(s)	25, 388
FaiI	YATR	2 cut(s)	23, 386
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FatI	CATG	2 cut(s)	21, 384
Fnu4HI	GCNGC	1 cut(s)	374
FokI	GGATG	1 cut(s)	493
Fsp4HI	GCNGC	1 cut(s)	374
GluI	GCNGC	1 cut(s)	374
HapII	CCGG	3 cut(s)	87, 263, 520
Hin1II	CATG	2 cut(s)	25, 388
HinfI	GANTC	5 cut(s)	5, 173, 450, 503, 527
HpaII	CCGG	3 cut(s)	87, 263, 520
HphI	GGTGA	3 cut(s)	125, 355, 536
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	6 cut(s)	201, 208, 418, 455, 476, 508
Hpy188III	TCNNGA	2 cut(s)	46, 385
Hpy8I	GTNNAC	1 cut(s)	337
HpyAV	CCTTC	3 cut(s)	493, 543, 552
HpyCH4III	ACNGT	2 cut(s)	74, 400
HpyCH4IV	ACGT	1 cut(s)	236
HpyCH4V	TGCA	1 cut(s)	471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 419
HpyF3I	CTNAG	4 cut(s)	55, 417, 558, 584
HpySE526I	ACGT	1 cut(s)	236
Hsp92II	CATG	2 cut(s)	25, 388
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	9 cut(s)	100, 179, 276, 355, 391, 418, 533, 570, 585
Lsp1109I	GCAGC	1 cut(s)	360
LweI	GCATC	4 cut(s)	369, 458, 471, 480
MaeII	ACGT	1 cut(s)	236
MboII	GAAGA	4 cut(s)	239, 358, 521, 530
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	3 cut(s)	254, 306, 321
MlyI	GAGTC	2 cut(s)	497, 536
MmeI	TCCRAC	1 cut(s)	150
Mph1103I	ATGCAT	1 cut(s)	473
MreI	CGCCGGCG	1 cut(s)	86
MroNI	GCCGGC	1 cut(s)	86
MseI	TTAA	1 cut(s)	179
MslI	CAYNNNNRTG	2 cut(s)	389, 522
MspI	CCGG	3 cut(s)	87, 263, 520
MspR9I	CCNGG	2 cut(s)	406, 521
MvaI	CCWGG	1 cut(s)	406
MwoI	GCNNNNNNNGC	2 cut(s)	410, 419
NaeI	GCCGGC	1 cut(s)	88
NciI	CCSGG	1 cut(s)	521
NgoMIV	GCCGGC	1 cut(s)	86
NlaIII	CATG	2 cut(s)	25, 388
NsiI	ATGCAT	1 cut(s)	473
NspV	TTCGAA	1 cut(s)	8
OliI	CACNNNNGTG	1 cut(s)	522
PagI	TCATGA	1 cut(s)	384
PdiI	GCCGGC	1 cut(s)	88
PfeI	GAWTC	3 cut(s)	5, 173, 450
PkrI	GCNGC	1 cut(s)	375
PleI	GAGTC	2 cut(s)	497, 535
PpsI	GAGTC	2 cut(s)	497, 535
Psp6I	CCWGG	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	404
PspPI	GGNCC	1 cut(s)	136
RseI	CAYNNNNRTG	2 cut(s)	389, 522
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	1 cut(s)	374
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	2 cut(s)	497, 536
ScrFI	CCNGG	2 cut(s)	406, 521
SduI	GDGCHC	1 cut(s)	396
SetI	ASST	5 cut(s)	30, 198, 239, 345, 559
SfaNI	GCATC	4 cut(s)	369, 458, 471, 480
SfuI	TTCGAA	1 cut(s)	8
SgrAI	CRCCGGYG	1 cut(s)	86
SinI	GGWCC	1 cut(s)	136
SmiMI	CAYNNNNRTG	2 cut(s)	389, 522
Sse9I	AATT	3 cut(s)	254, 306, 321
SsiI	CCGC	3 cut(s)	84, 139, 294
StyD4I	CCNGG	2 cut(s)	404, 519
TaaI	ACNGT	2 cut(s)	74, 400
TaiI	ACGT	1 cut(s)	239
TaqI	TCGA	2 cut(s)	8, 466
TasI	AATT	3 cut(s)	254, 306, 321
TfiI	GAWTC	3 cut(s)	5, 173, 450
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TscAI	CASTG	2 cut(s)	374, 403
TseI	GCWGC	1 cut(s)	373
TspGWI	ACGGA	2 cut(s)	239, 329
TspRI	CASTG	2 cut(s)	374, 403
VpaK11BI	GGWCC	1 cut(s)	136
Zsp2I	ATGCAT	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.