Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0016829

Physical Location & Seq

Genomic Coordinates Reverse (-)

26159150 .. 26161075

Gene Structure 1926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCGGTACAGGAGAGTTGTGGATCTTCATCACATGCTCGGAGGAGATTCGAATCGCTCTACTGTGCGTAAAGCTAAGAAGGAGTTGAAGCACCTGAGGGTTCTGAGGATGGCAGTGGTTTACATGATCATGTGTGTGCTGAATCTGTACGAGTGTGCGAAGAAGAACTCGGGGCCTCTGAGGTCGACTGTGTGGACTATGGAGGTTGCTATGATCACTATTGTTGGTCCAGTCTACAGGAGATACAAGGGAGTGCCTGATGATTTCCTTGTGCTACTTGACAACAAGATTGATGAAGCGGCTGACAAGTTTGATAAGCATGCTCCTCCTTTGGCTAAGCAGACAGTGCACCTAGCTCTGGGTTCTATCCATAAAGCATTGGAGAAGATCCAAGCATTCGTGAACAAGGCTCAGACTAGGGGTCTACACACAGCAGCTATTCATGATGCAGCAACAGGAAACAACCAGTTTCTCTTCAACCAACCTATCAAGTTCTGGGTTGGACTCGAGTGCCAGTGCCCTCCCATCCACACAGTTGCAAAGAAGGCTACACCAGCAGCTGTTTACTTGTCCCAGAAATACAACCAAGTGGTACGAGACTTGACCATGAAGGGTTATACTGTTTTCGGATATCCACCTTTGGTTCCACTCGACGCGATATCAACAGCACTTAGCATGGCGAGGCAGAGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005811 GO:0006996 GO:0007275 GO:0008150 GO:0009555 GO:0009987 GO:0012505 GO:0016043 GO:0032501 GO:0032502 GO:0034389 GO:0040007 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0050789 GO:0065007 GO:0071840 GO:0080134 GO:0080186 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

REF

Protein Analysis

232

Amino Acids

26.07

Weight (kDa)

9.9

Isoelectric Point (pI)

32.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
REF	PF05755	25 - 224	1.9e-59	Rubber elongation factor protein (REF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016829)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g23780
rosa_chinensis	RchiOBHm_Chr4g0430271
rosa_laevigata	RLG00000006989
rosa_multiflora	Rmu_sc0001089.1_g000025 Rmu_sc0027338.1_g000002
rosa_roxburghii	Rroxscaffold_5G00372070
rosa_rugosa	Rorug04G0242200 Rorug04G0242300 Rorug04G0242400
rosa_samantha	Rh4AG298700 Rh4BG305300 Rh4CG320800 Rh4DG302600
rosa_wichuraiana	Rw4G025900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	185, 234, 424
AccII	CGCG	1 cut(s)	656
AciI	CCGC	2 cut(s)	4, 299
AclWI	GGATC	2 cut(s)	30, 382
AfaI	GTAC	3 cut(s)	8, 149, 594
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	2 cut(s)	88, 478
AhdI	GACNNNNNGTC	1 cut(s)	420
AluBI	AGCT	4 cut(s)	74, 356, 437, 560
AluI	AGCT	4 cut(s)	74, 356, 437, 560
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	1 cut(s)	591
Alw44I	GTGCAC	1 cut(s)	347
AlwI	GGATC	2 cut(s)	30, 382
AlwNI	CAGNNNCTG	1 cut(s)	560
Ama87I	CYCGRG	2 cut(s)	169, 506
AoxI	GGCC	1 cut(s)	173
ApaLI	GTGCAC	1 cut(s)	347
ApeKI	GCWGC	3 cut(s)	434, 449, 557
AspS9I	GGNCC	2 cut(s)	173, 227
AsuII	TTCGAA	1 cut(s)	50
AvaI	CYCGRG	2 cut(s)	169, 506
AvaII	GGWCC	1 cut(s)	227
AxyI	CCTNAGG	1 cut(s)	95
BaeGI	GKGCMC	2 cut(s)	351, 521
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	3 cut(s)	446, 461, 569
BccI	CCATC	2 cut(s)	103, 533
BclI	TGATCA	2 cut(s)	126, 213
BcoDI	GTCTC	1 cut(s)	591
BfaI	CTAG	2 cut(s)	353, 417
BfmI	CTRYAG	1 cut(s)	235
BisI	GCNGC	4 cut(s)	300, 435, 450, 558
BlpI	GCTNAGC	1 cut(s)	336
BlsI	GCNGC	4 cut(s)	301, 436, 451, 559
Bme18I	GGWCC	1 cut(s)	227
BmeRI	GACNNNNNGTC	1 cut(s)	420
BmeT110I	CYCGRG	2 cut(s)	169, 506
BmgT120I	GGNCC	2 cut(s)	173, 227
BmiI	GGNNCC	2 cut(s)	174, 645
BmsI	GCATC	1 cut(s)	436
Bpu1102I	GCTNAGC	1 cut(s)	336
Bpu14I	TTCGAA	1 cut(s)	50
BsaBI	GATNNNNATC	2 cut(s)	27, 51
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse1I	ACTGG	3 cut(s)	230, 466, 514
Bse21I	CCTNAGG	1 cut(s)	95
Bse8I	GATNNNNATC	2 cut(s)	27, 51
BseGI	GGATG	2 cut(s)	114, 525
BseJI	GATNNNNATC	2 cut(s)	27, 51
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	4 cut(s)	86, 95, 170, 425
BseNI	ACTGG	3 cut(s)	230, 466, 514
BseRI	GAGGAG	2 cut(s)	57, 315
BseSI	GKGCMC	2 cut(s)	351, 521
BseXI	GCAGC	3 cut(s)	446, 461, 569
Bsh1236I	CGCG	1 cut(s)	656
BshFI	GGCC	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	351
BsiHKCI	CYCGRG	2 cut(s)	169, 506
BslFI	GGGAC	1 cut(s)	556
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	1 cut(s)	591
BsmFI	GGGAC	1 cut(s)	556
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	175
BsoBI	CYCGRG	2 cut(s)	169, 506
Bsp119I	TTCGAA	1 cut(s)	50
Bsp1286I	GDGCHC	2 cut(s)	351, 521
Bsp143I	GATC	4 cut(s)	22, 126, 213, 387
Bsp1720I	GCTNAGC	1 cut(s)	336
BspACI	CCGC	2 cut(s)	4, 299
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	4 cut(s)	87, 96, 171, 424
BspFNI	CGCG	1 cut(s)	656
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	174, 645
BspPI	GGATC	2 cut(s)	30, 382
BspT104I	TTCGAA	1 cut(s)	50
BsrI	ACTGG	3 cut(s)	230, 466, 514
BssMI	GATC	4 cut(s)	22, 126, 213, 387
Bst4CI	ACNGT	5 cut(s)	64, 190, 346, 535, 622
Bst6I	CTCTTC	1 cut(s)	479
BstAPI	GCANNNNNTGC	1 cut(s)	346
BstBI	TTCGAA	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	7 cut(s)	75, 95, 104, 179, 336, 411, 671
BstF5I	GGATG	2 cut(s)	114, 525
BstFNI	CGCG	1 cut(s)	656
BstKTI	GATC	4 cut(s)	25, 129, 216, 390
BstMAI	GTCTC	1 cut(s)	591
BstMBI	GATC	4 cut(s)	22, 126, 213, 387
BstMWI	GCNNNNNNNGC	3 cut(s)	346, 545, 554
BstNSI	RCATGY	2 cut(s)	37, 323
BstSFI	CTRYAG	1 cut(s)	235
BstSLI	GKGCMC	2 cut(s)	351, 521
BstUI	CGCG	1 cut(s)	656
BstV1I	GCAGC	3 cut(s)	446, 461, 569
BstX2I	RGATCY	2 cut(s)	22, 387
BstYI	RGATCY	2 cut(s)	22, 387
Bsu36I	CCTNAGG	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	175
BtsCI	GGATG	2 cut(s)	114, 525
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	3 cut(s)	120, 351, 521
Cac8I	GCNNGC	1 cut(s)	321
CaiI	CAGNNNCTG	1 cut(s)	560
CciI	TCATGA	1 cut(s)	442
Cfr13I	GGNCC	2 cut(s)	173, 227
CseI	GACGC	1 cut(s)	662
Csp6I	GTAC	3 cut(s)	7, 148, 593
CviAII	CATG	7 cut(s)	34, 124, 130, 320, 443, 607, 676
CviJI	RGCY	9 cut(s)	74, 175, 302, 335, 356, 410, 437, 548, 560
CviKI_1	RGCY	9 cut(s)	74, 175, 302, 335, 356, 410, 437, 548, 560
CviQI	GTAC	3 cut(s)	7, 148, 593
DdeI	CTNAG	7 cut(s)	75, 95, 104, 179, 336, 411, 671
DpnI	GATC	4 cut(s)	24, 128, 215, 389
DpnII	GATC	4 cut(s)	22, 126, 213, 387
DriI	GACNNNNNGTC	1 cut(s)	420
Eam1104I	CTCTTC	1 cut(s)	479
Eam1105I	GACNNNNNGTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	479
Eco32I	GATATC	2 cut(s)	632, 660
Eco47I	GGWCC	1 cut(s)	227
Eco81I	CCTNAGG	1 cut(s)	95
Eco88I	CYCGRG	2 cut(s)	169, 506
EcoO109I	RGGNCCY	1 cut(s)	173
EcoRV	GATATC	2 cut(s)	632, 660
FaeI	CATG	7 cut(s)	37, 127, 133, 323, 446, 610, 679
FaqI	GGGAC	1 cut(s)	556
FatI	CATG	7 cut(s)	33, 123, 129, 319, 442, 606, 675
FbaI	TGATCA	2 cut(s)	126, 213
FblI	GTMKAC	3 cut(s)	185, 234, 424
Fnu4HI	GCNGC	4 cut(s)	300, 435, 450, 558
FokI	GGATG	2 cut(s)	121, 512
Fsp4HI	GCNGC	4 cut(s)	300, 435, 450, 558
FspBI	CTAG	2 cut(s)	353, 417
GluI	GCNGC	4 cut(s)	300, 435, 450, 558
HaeIII	GGCC	1 cut(s)	175
HgaI	GACGC	1 cut(s)	662
Hin1II	CATG	7 cut(s)	37, 127, 133, 323, 446, 610, 679
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HinfI	GANTC	4 cut(s)	47, 52, 142, 504
Hpy166II	GTNNAC	8 cut(s)	121, 186, 195, 235, 349, 403, 425, 565
Hpy188I	TCNGA	5 cut(s)	41, 105, 180, 414, 629
Hpy188III	TCNNGA	2 cut(s)	400, 443
Hpy8I	GTNNAC	8 cut(s)	121, 186, 195, 235, 349, 403, 425, 565
Hpy99I	CGWCG	1 cut(s)	656
HpyAV	CCTTC	3 cut(s)	73, 538, 604
HpyCH4III	ACNGT	5 cut(s)	64, 190, 346, 535, 622
HpyCH4V	TGCA	3 cut(s)	349, 449, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	346, 545, 554
HpyF3I	CTNAG	7 cut(s)	75, 95, 104, 179, 336, 411, 671
Hsp92II	CATG	7 cut(s)	37, 127, 133, 323, 446, 610, 679
Ksp22I	TGATCA	2 cut(s)	126, 213
Kzo9I	GATC	4 cut(s)	22, 126, 213, 387
LmnI	GCTCC	1 cut(s)	328
Lsp1109I	GCAGC	3 cut(s)	446, 461, 569
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	2 cut(s)	353, 417
MalI	GATC	4 cut(s)	24, 128, 215, 389
MboI	GATC	4 cut(s)	22, 126, 213, 387
MboII	GAAGA	5 cut(s)	17, 172, 175, 397, 466
MflI	RGATCY	2 cut(s)	22, 387
MhlI	GDGCHC	2 cut(s)	351, 521
MlyI	GAGTC	1 cut(s)	498
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	9 cut(s)	35, 90, 99, 174, 186, 196, 336, 531, 675
MslI	CAYNNNNRTG	2 cut(s)	128, 134
MspA1I	CMGCKG	1 cut(s)	560
Mva1269I	GAATGC	1 cut(s)	395
MvnI	CGCG	1 cut(s)	656
MwoI	GCNNNNNNNGC	3 cut(s)	346, 545, 554
NdeII	GATC	4 cut(s)	22, 126, 213, 387
NlaIII	CATG	7 cut(s)	37, 127, 133, 323, 446, 610, 679
NlaIV	GGNNCC	2 cut(s)	174, 645
NspI	RCATGY	2 cut(s)	37, 323
NspV	TTCGAA	1 cut(s)	50
PaeI	GCATGC	1 cut(s)	323
PaeR7I	CTCGAG	1 cut(s)	506
PagI	TCATGA	1 cut(s)	442
PctI	GAATGC	1 cut(s)	395
PfeI	GAWTC	3 cut(s)	47, 52, 142
PkrI	GCNGC	4 cut(s)	301, 436, 451, 559
PleI	GAGTC	1 cut(s)	498
PpsI	GAGTC	1 cut(s)	498
PspN4I	GGNNCC	2 cut(s)	174, 645
PspPI	GGNCC	2 cut(s)	173, 227
PspXI	VCTCGAGB	1 cut(s)	506
PstNI	CAGNNNCTG	1 cut(s)	560
PsuI	RGATCY	2 cut(s)	22, 387
PvuII	CAGCTG	1 cut(s)	560
RsaI	GTAC	3 cut(s)	8, 149, 594
RsaNI	GTAC	3 cut(s)	7, 148, 593
RseI	CAYNNNNRTG	2 cut(s)	128, 134
SalI	GTCGAC	1 cut(s)	184
SatI	GCNGC	4 cut(s)	300, 435, 450, 558
Sau3AI	GATC	4 cut(s)	22, 126, 213, 387
Sau96I	GGNCC	2 cut(s)	173, 227
SchI	GAGTC	1 cut(s)	498
SduI	GDGCHC	2 cut(s)	351, 521
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	1 cut(s)	235
Sfr274I	CTCGAG	1 cut(s)	506
SfuI	TTCGAA	1 cut(s)	50
SinI	GGWCC	1 cut(s)	227
SlaI	CTCGAG	1 cut(s)	506
SmiMI	CAYNNNNRTG	2 cut(s)	128, 134
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
SphI	GCATGC	1 cut(s)	323
SsiI	CCGC	2 cut(s)	4, 299
SspMI	CTAG	2 cut(s)	353, 417
TaaI	ACNGT	5 cut(s)	64, 190, 346, 535, 622
TaqI	TCGA	4 cut(s)	50, 185, 507, 651
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	3 cut(s)	47, 52, 142
TscAI	CASTG	3 cut(s)	120, 351, 521
TseI	GCWGC	3 cut(s)	434, 449, 557
TspDTI	ATGAA	4 cut(s)	17, 309, 431, 623
TspRI	CASTG	3 cut(s)	120, 351, 521
VneI	GTGCAC	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	227
XceI	RCATGY	2 cut(s)	37, 323
XhoI	CTCGAG	1 cut(s)	506
XmiI	GTMKAC	3 cut(s)	185, 234, 424
XspI	CTAG	2 cut(s)	353, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.