Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0016829

Physical Location & Seq

Genomic Coordinates Forward (+)

41092508 .. 41093370

Gene Structure 863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0242200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCCTTTCCTTGCCATCTACCTGTTTCAGTCTCCTGTTATATTGAGCAAGGGGACTATAGAGGGAGATGTTTCAGAGAAACTTGATGTTTATGCCCGTCCAAACAAGGAGGTGCTATCACTTGTAATCATCTGTGCAGTATCTCAAAGACTAATAGTGAACAAACCTCTAGGACATTTTGACAGAGCTGAAAGCATACTTGGACTGGGTATAAGAAGAAGAGTCCCCAGCGAGAGATTCTTATGGAAAACGAAAGAGTTAGAGCGGAAGATAGCTCAAATGACTAATTGGATTGCAAGTATCAAAAGGGTTATTATCAGTCAGAATGAGGACATCGAAATTGTGAATAAATTGTCAACAGCCACAATGATTGATCCTAGAATCACTGTTGCATGGTGCAGGAGGCATGGAGTTCCCATTGACAGTGTGAGTCACACCTTCATTGTCTTATTAAAGCCAATAGTATTACCAATAGATATATATATGCTTCAATTGTTCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005811 GO:0006996 GO:0007275 GO:0008150 GO:0009555 GO:0009987 GO:0012505 GO:0016043 GO:0032501 GO:0032502 GO:0034389 GO:0040007 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0050789 GO:0065007 GO:0071840 GO:0080134 GO:0080186 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

REF

Protein Analysis

167

Amino Acids

19.11

Weight (kDa)

9.39

Isoelectric Point (pI)

57.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Topo_C_assoc	PF14370	110 - 143	1.1e-06	C-terminal topoisomerase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016829)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g23780
rosa_chinensis	RchiOBHm_Chr4g0430271
rosa_laevigata	RLG00000006989
rosa_multiflora	Rmu_sc0001089.1_g000025 Rmu_sc0027338.1_g000002
rosa_roxburghii	Rroxscaffold_5G00372070
rosa_rugosa	Rorug04G0242200 Rorug04G0242300 Rorug04G0242400
rosa_samantha	Rh4AG298700 Rh4BG305300 Rh4CG320800 Rh4DG302600
rosa_wichuraiana	Rw4G025900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	265
AciI	CCGC	1 cut(s)	265
AclWI	GGATC	1 cut(s)	368
AgsI	TTSAA	1 cut(s)	491
AjuI	GAANNNNNNNTTGG	2 cut(s)	183, 215
AluBI	AGCT	2 cut(s)	188, 275
AluI	AGCT	2 cut(s)	188, 275
Alw26I	GTCTC	1 cut(s)	36
AlwI	GGATC	1 cut(s)	368
AsuII	TTCGAA	1 cut(s)	498
BccI	CCATC	1 cut(s)	23
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	2 cut(s)	170, 378
BfmI	CTRYAG	1 cut(s)	57
BmrI	ACTGGG	1 cut(s)	215
BmuI	ACTGGG	1 cut(s)	215
Bpu14I	TTCGAA	1 cut(s)	498
Bse1I	ACTGG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	210
BseYI	CCCAGC	1 cut(s)	227
BsgI	GTGCAG	2 cut(s)	156, 418
BslFI	GGGAC	2 cut(s)	67, 209
BsmAI	GTCTC	1 cut(s)	36
BsmFI	GGGAC	2 cut(s)	67, 209
Bsp119I	TTCGAA	1 cut(s)	498
Bsp143I	GATC	1 cut(s)	373
BspACI	CCGC	1 cut(s)	265
BspPI	GGATC	1 cut(s)	368
BspT104I	TTCGAA	1 cut(s)	498
BsrBI	CCGCTC	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	373
Bst4CI	ACNGT	2 cut(s)	388, 425
Bst6I	CTCTTC	1 cut(s)	214
BstBI	TTCGAA	1 cut(s)	498
BstKTI	GATC	1 cut(s)	376
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	1 cut(s)	373
BstSFI	CTRYAG	1 cut(s)	57
BtsIMutI	CAGTG	2 cut(s)	384, 430
CspCI	CAANNNNNGTGG	2 cut(s)	352, 387
CviAII	CATG	2 cut(s)	393, 407
CviJI	RGCY	4 cut(s)	188, 275, 362, 457
CviKI_1	RGCY	4 cut(s)	188, 275, 362, 457
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
FaeI	CATG	2 cut(s)	396, 410
FaqI	GGGAC	2 cut(s)	67, 209
FatI	CATG	2 cut(s)	392, 406
FspBI	CTAG	2 cut(s)	170, 378
GsaI	CCCAGC	1 cut(s)	231
Hin1II	CATG	2 cut(s)	396, 410
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HinfI	GANTC	4 cut(s)	222, 237, 381, 430
Hpy166II	GTNNAC	2 cut(s)	160, 357
Hpy188I	TCNGA	2 cut(s)	76, 324
Hpy8I	GTNNAC	2 cut(s)	160, 357
HpyAV	CCTTC	1 cut(s)	448
HpyCH4III	ACNGT	2 cut(s)	388, 425
HpyCH4V	TGCA	4 cut(s)	137, 296, 392, 399
Hsp92II	CATG	2 cut(s)	396, 410
Kzo9I	GATC	1 cut(s)	373
LpnPI	CCDG	5 cut(s)	35, 48, 191, 241, 385
MaeI	CTAG	2 cut(s)	170, 378
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	1 cut(s)	375
MbiI	CCGCTC	1 cut(s)	265
MboI	GATC	1 cut(s)	373
MboII	GAAGA	3 cut(s)	228, 231, 280
MfeI	CAATTG	1 cut(s)	491
MluCI	AATT	4 cut(s)	286, 339, 350, 491
MlyI	GAGTC	2 cut(s)	231, 439
MnlI	CCTC	5 cut(s)	55, 103, 177, 322, 396
MseI	TTAA	1 cut(s)	452
MunI	CAATTG	1 cut(s)	491
NdeII	GATC	1 cut(s)	373
NlaIII	CATG	2 cut(s)	396, 410
NmuCI	GTSAC	1 cut(s)	431
NspV	TTCGAA	1 cut(s)	498
PfeI	GAWTC	2 cut(s)	237, 381
PleI	GAGTC	2 cut(s)	230, 438
PpsI	GAGTC	2 cut(s)	230, 438
PspFI	CCCAGC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	452
Sau3AI	GATC	1 cut(s)	373
SchI	GAGTC	2 cut(s)	231, 439
SetI	ASST	6 cut(s)	24, 114, 169, 190, 277, 440
SfcI	CTRYAG	1 cut(s)	57
SfuI	TTCGAA	1 cut(s)	498
Sse9I	AATT	4 cut(s)	286, 339, 350, 491
SsiI	CCGC	1 cut(s)	265
SspMI	CTAG	2 cut(s)	170, 378
TaaI	ACNGT	2 cut(s)	388, 425
TaqI	TCGA	2 cut(s)	336, 498
TasI	AATT	4 cut(s)	286, 339, 350, 491
TfiI	GAWTC	2 cut(s)	237, 381
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TscAI	CASTG	2 cut(s)	391, 430
TseFI	GTSAC	1 cut(s)	431
Tsp45I	GTSAC	1 cut(s)	431
TspDTI	ATGAA	1 cut(s)	430
TspRI	CASTG	2 cut(s)	391, 430
XspI	CTAG	2 cut(s)	170, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.