Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0016829

Physical Location & Seq

Genomic Coordinates Forward (+)

12474529 .. 12477291

Gene Structure 2763 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006989

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGTGTGAAGTTGAGCTGCAATCTGAACTCAGGACCGGTTTCATGTTTGCTGGACTTGCCTCGCTCTGCCTTCCACTCAATAGATACCCTTCATCGACAGATGCAGAGCACAAAATTCCTGAACGCATTTCGCGTGATCAGGCACGCTCTCCGAGGCAAAACCAACACCTCTCTCTCTCTCTCTCTCTCAGATTCTCAACCTTAGGTCGAAACAATGTTAAGCTTCGGAGAAGCTCTGTTGTTGCAGAGAAATCGAACGAAGCTGAGATCACCGAGCAGGACGCGCTTCTTCAGGAAATGTATCATCCACTGCCGATGATGCAGTATAAGAGAGTCGTGGATCTTCATAACTTGCTCGGAGGAGTCTCGAATCAGACTAGTGTGCGTGGGATCAGTGATGAGAATGAACGAGATCGCTGGGGAAAGAAGCCTATTAACGCTGACGCAAGCAGAGCTAACGAGTTGAAGTACCTGAGGGTTTTGAGGATGGCAGTGATTTACATGATGATGTTTGTGCTGAATCTGTATGAGTACACGAAGAAGAACTTGGGGCCTCTGAGATCGACTGTGTGGACTGTGGAGGTTGCTATGATCACTATTGTTGGTCCAGTCTACCAGAGATTCAAGGGAGTGCCTGATTATTTCTTTTCTTTACTCGACACGAAGATTGATGAAGCAGCTGACAAGTTTGATAAGCATGCTTCTCCTTTGGCTAAGCAGGTGGTGTACCTAGCTCTGGGTTCTATCCAGAAAGCATTGAAAAAGACCCAAGCATTTGTGAACGAGGCTCAGGCTGGCGGTCTACACACAGCTATTCATTCTGCAGCTACAGAATATAAGCTGCTTCTCTTCAACCAATCCATGAAGTTTTGGGTTGGACTCGAGTACCAGTGTCCTCCCATACACACAGTGGCAGAGAAAGCTACACCAGCTGCTGCTTACTTGTCCCGGAAATACAACAAAGTCGTAAGAGACTTGAACCTGAAGGGTTACACTATCTTCGGATATTTGCCTTTGGTTCCGATCGATCAGATATCAACAGCACTTAATAGGGCGAGGCAGAGAGATAGGAGAGGCAGCTATGCGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005811 GO:0006996 GO:0007275 GO:0008150 GO:0009555 GO:0009987 GO:0012505 GO:0016043 GO:0032501 GO:0032502 GO:0034389 GO:0040007 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0050789 GO:0065007 GO:0071840 GO:0080134 GO:0080186 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

REF

Protein Analysis

364

Amino Acids

41.21

Weight (kDa)

9.51

Isoelectric Point (pI)

39.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
REF	PF05755	151 - 350	2.2e-60	Rubber elongation factor protein (REF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016829)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g23780
rosa_chinensis	RchiOBHm_Chr4g0430271
rosa_laevigata	RLG00000006989
rosa_multiflora	Rmu_sc0001089.1_g000025 Rmu_sc0027338.1_g000002
rosa_roxburghii	Rroxscaffold_5G00372070
rosa_rugosa	Rorug04G0242200 Rorug04G0242300 Rorug04G0242400
rosa_samantha	Rh4AG298700 Rh4BG305300 Rh4CG320800 Rh4DG302600
rosa_wichuraiana	Rw4G025900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	709
Acc36I	ACCTGC	1 cut(s)	709
AccI	GTMKAC	2 cut(s)	612, 802
AccII	CGCG	2 cut(s)	133, 284
AciI	CCGC	1 cut(s)	798
AclWI	GGATC	2 cut(s)	348, 398
AcsI	RAATTY	1 cut(s)	114
AcuI	CTGAAG	2 cut(s)	275, 1004
AdeI	CACNNNGTG	1 cut(s)	910
AfaI	GTAC	4 cut(s)	470, 533, 728, 887
AfiI	CCNNNNNNNGG	1 cut(s)	736
AgeI	ACCGGT	1 cut(s)	35
AgsI	TTSAA	5 cut(s)	466, 625, 760, 853, 979
AhlI	ACTAGT	1 cut(s)	377
AjuI	GAANNNNNNNTTGG	2 cut(s)	530, 562
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	2 cut(s)	370, 966
AlwI	GGATC	2 cut(s)	348, 398
AlwNI	CAGNNNCTG	1 cut(s)	935
Ama87I	CYCGRG	1 cut(s)	881
AoxI	GGCC	1 cut(s)	551
ApeKI	GCWGC	7 cut(s)	16, 677, 824, 841, 932, 935, 1077
ApoI	RAATTY	1 cut(s)	114
AsiGI	ACCGGT	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	3 cut(s)	33, 551, 605
AsuC2I	CCSGG	1 cut(s)	949
AsuHPI	GGTGA	1 cut(s)	262
AvaI	CYCGRG	1 cut(s)	881
AvaII	GGWCC	2 cut(s)	33, 605
AxyI	CCTNAGG	2 cut(s)	202, 473
BaeI	ACNNNNGTAYC	2 cut(s)	869, 902
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	6 cut(s)	3, 689, 828, 836, 919, 922
BccI	CCATC	1 cut(s)	481
BcgI	CGANNNNNNTGC	2 cut(s)	234, 268
BclI	TGATCA	2 cut(s)	136, 591
BcnI	CCSGG	1 cut(s)	949
BcoDI	GTCTC	2 cut(s)	370, 966
BcuI	ACTAGT	1 cut(s)	377
BfaI	CTAG	2 cut(s)	378, 731
BfmI	CTRYAG	2 cut(s)	822, 828
BfuAI	ACCTGC	1 cut(s)	709
BisI	GCNGC	7 cut(s)	17, 678, 825, 842, 933, 936, 1078
BlpI	GCTNAGC	1 cut(s)	714
BlsI	GCNGC	7 cut(s)	18, 679, 826, 843, 934, 937, 1079
Bme1390I	CCNGG	1 cut(s)	949
Bme18I	GGWCC	2 cut(s)	33, 605
BmeT110I	CYCGRG	1 cut(s)	881
BmgT120I	GGNCC	3 cut(s)	33, 551, 605
BmiI	GGNNCC	2 cut(s)	552, 1020
BmrFI	CCNGG	1 cut(s)	949
BmsI	GCATC	2 cut(s)	91, 309
Bpu10I	CCTNAGC	1 cut(s)	789
Bpu1102I	GCTNAGC	1 cut(s)	714
BpuMI	CCSGG	1 cut(s)	949
Bsa29I	ATCGAT	1 cut(s)	1026
BsaJI	CCNNGG	1 cut(s)	152
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	736
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	2 cut(s)	608, 889
Bse21I	CCTNAGG	2 cut(s)	202, 473
BseCI	ATCGAT	1 cut(s)	1026
BseDI	CCNNGG	1 cut(s)	152
BseGI	GGATG	2 cut(s)	304, 492
BseLI	CCNNNNNNNGG	1 cut(s)	736
BseMII	CTCAG	6 cut(s)	43, 202, 255, 464, 548, 803
BseNI	ACTGG	2 cut(s)	608, 889
BseRI	GAGGAG	1 cut(s)	375
BseXI	GCAGC	6 cut(s)	3, 689, 828, 836, 919, 922
BseYI	CCCAGC	1 cut(s)	417
Bsh1236I	CGCG	2 cut(s)	133, 284
Bsh1285I	CGRYCG	1 cut(s)	1026
BshFI	GGCC	1 cut(s)	553
BshTI	ACCGGT	1 cut(s)	35
BshVI	ATCGAT	1 cut(s)	1026
BsiEI	CGRYCG	1 cut(s)	1026
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	881
BsiSI	CCGG	2 cut(s)	36, 949
BslFI	GGGAC	1 cut(s)	931
BslI	CCNNNNNNNGG	1 cut(s)	736
BsmAI	GTCTC	2 cut(s)	370, 966
BsmFI	GGGAC	1 cut(s)	931
BsnI	GGCC	1 cut(s)	553
BsoBI	CYCGRG	1 cut(s)	881
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	9 cut(s)	136, 267, 340, 390, 412, 560, 591, 1023, 1027
Bsp1720I	GCTNAGC	1 cut(s)	714
BspACI	CCGC	1 cut(s)	798
BspANI	GGCC	1 cut(s)	553
BspCNI	CTCAG	6 cut(s)	42, 201, 256, 465, 549, 802
BspDI	ATCGAT	1 cut(s)	1026
BspFNI	CGCG	2 cut(s)	133, 284
BspLI	GGNNCC	2 cut(s)	552, 1020
BspMAI	CTGCAG	1 cut(s)	826
BspMI	ACCTGC	1 cut(s)	709
BspPI	GGATC	2 cut(s)	348, 398
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	2 cut(s)	608, 889
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	152
BssMI	GATC	9 cut(s)	136, 267, 340, 390, 412, 560, 591, 1023, 1027
Bst4CI	ACNGT	3 cut(s)	568, 577, 910
Bst6I	CTCTTC	1 cut(s)	854
BstC8I	GCNNGC	4 cut(s)	145, 448, 699, 796
BstDEI	CTNAG	8 cut(s)	29, 188, 202, 264, 473, 557, 714, 789
BstF5I	GGATG	2 cut(s)	304, 492
BstFNI	CGCG	2 cut(s)	133, 284
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	9 cut(s)	139, 270, 343, 393, 415, 563, 594, 1026, 1030
BstMAI	GTCTC	2 cut(s)	370, 966
BstMBI	GATC	9 cut(s)	136, 267, 340, 390, 412, 560, 591, 1023, 1027
BstMCI	CGRYCG	1 cut(s)	1026
BstMWI	GCNNNNNNNGC	6 cut(s)	56, 283, 319, 452, 920, 929
BstNSI	RCATGY	1 cut(s)	701
BstSCI	CCNGG	1 cut(s)	947
BstSFI	CTRYAG	2 cut(s)	822, 828
BstUI	CGCG	2 cut(s)	133, 284
BstV1I	GCAGC	6 cut(s)	3, 689, 828, 836, 919, 922
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
Bsu15I	ATCGAT	1 cut(s)	1026
Bsu36I	CCTNAGG	2 cut(s)	202, 473
BsuRI	GGCC	1 cut(s)	553
BsuTUI	ATCGAT	1 cut(s)	1026
BtsCI	GGATG	2 cut(s)	304, 492
BtsI	GCAGTG	2 cut(s)	308, 498
BtsIMutI	CAGTG	5 cut(s)	308, 400, 498, 896, 915
BveI	ACCTGC	1 cut(s)	709
Cac8I	GCNNGC	4 cut(s)	145, 448, 699, 796
CaiI	CAGNNNCTG	1 cut(s)	935
CfoI	GCGC	1 cut(s)	286
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	3 cut(s)	33, 551, 605
ClaI	ATCGAT	1 cut(s)	1026
CseI	GACGC	2 cut(s)	290, 452
Csp6I	GTAC	4 cut(s)	469, 532, 727, 886
CspAI	ACCGGT	1 cut(s)	35
CviAII	CATG	4 cut(s)	43, 502, 698, 862
CviQI	GTAC	4 cut(s)	469, 532, 727, 886
DdeI	CTNAG	8 cut(s)	29, 188, 202, 264, 473, 557, 714, 789
DpnI	GATC	9 cut(s)	138, 269, 342, 392, 414, 562, 593, 1025, 1029
DpnII	GATC	9 cut(s)	136, 267, 340, 390, 412, 560, 591, 1023, 1027
DraIII	CACNNNGTG	1 cut(s)	910
Eam1104I	CTCTTC	1 cut(s)	854
EarI	CTCTTC	1 cut(s)	854
Eco32I	GATATC	1 cut(s)	1035
Eco47I	GGWCC	2 cut(s)	33, 605
Eco57I	CTGAAG	2 cut(s)	275, 1004
Eco81I	CCTNAGG	2 cut(s)	202, 473
Eco88I	CYCGRG	1 cut(s)	881
EcoO109I	RGGNCCY	1 cut(s)	551
EcoRV	GATATC	1 cut(s)	1035
FaeI	CATG	4 cut(s)	46, 505, 701, 865
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FaqI	GGGAC	1 cut(s)	931
FatI	CATG	4 cut(s)	42, 501, 697, 861
FbaI	TGATCA	2 cut(s)	136, 591
FblI	GTMKAC	2 cut(s)	612, 802
Fnu4HI	GCNGC	7 cut(s)	17, 678, 825, 842, 933, 936, 1078
FokI	GGATG	2 cut(s)	291, 499
Fsp4HI	GCNGC	7 cut(s)	17, 678, 825, 842, 933, 936, 1078
FspBI	CTAG	2 cut(s)	378, 731
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	7 cut(s)	17, 678, 825, 842, 933, 936, 1078
GsaI	CCCAGC	1 cut(s)	421
HaeIII	GGCC	1 cut(s)	553
HapII	CCGG	2 cut(s)	36, 949
HgaI	GACGC	2 cut(s)	290, 452
HhaI	GCGC	1 cut(s)	286
Hin1II	CATG	4 cut(s)	46, 505, 701, 865
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	7 cut(s)	192, 333, 363, 370, 520, 621, 879
HpaII	CCGG	2 cut(s)	36, 949
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	6 cut(s)	534, 573, 613, 727, 781, 803
Hpy188III	TCNNGA	5 cut(s)	31, 119, 293, 367, 748
Hpy8I	GTNNAC	6 cut(s)	534, 573, 613, 727, 781, 803
HpyAV	CCTTC	3 cut(s)	80, 99, 979
HpyCH4III	ACNGT	3 cut(s)	568, 577, 910
HpyCH4V	TGCA	5 cut(s)	19, 104, 245, 322, 824
HpyF10VI	GCNNNNNNNGC	6 cut(s)	56, 283, 319, 452, 920, 929
HpyF3I	CTNAG	8 cut(s)	29, 188, 202, 264, 473, 557, 714, 789
Hsp92II	CATG	4 cut(s)	46, 505, 701, 865
HspAI	GCGC	1 cut(s)	284
Ksp22I	TGATCA	2 cut(s)	136, 591
Kzo9I	GATC	9 cut(s)	136, 267, 340, 390, 412, 560, 591, 1023, 1027
Lsp1109I	GCAGC	6 cut(s)	3, 689, 828, 836, 919, 922
LweI	GCATC	2 cut(s)	91, 309
MaeI	CTAG	2 cut(s)	378, 731
MaeIII	GTNAC	1 cut(s)	989
MalI	GATC	9 cut(s)	138, 269, 342, 392, 414, 562, 593, 1025, 1029
MboI	GATC	9 cut(s)	136, 267, 340, 390, 412, 560, 591, 1023, 1027
MboII	GAAGA	7 cut(s)	281, 335, 550, 553, 676, 841, 991
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	1 cut(s)	114
MlyI	GAGTC	3 cut(s)	342, 372, 873
MmeI	TCCRAC	1 cut(s)	856
MseI	TTAA	3 cut(s)	219, 435, 1047
MslI	CAYNNNNRTG	1 cut(s)	506
MspA1I	CMGCKG	2 cut(s)	680, 932
MspI	CCGG	2 cut(s)	36, 949
MspR9I	CCNGG	1 cut(s)	949
MvnI	CGCG	2 cut(s)	133, 284
MwoI	GCNNNNNNNGC	6 cut(s)	56, 283, 319, 452, 920, 929
NciI	CCSGG	1 cut(s)	949
NdeII	GATC	9 cut(s)	136, 267, 340, 390, 412, 560, 591, 1023, 1027
NlaIII	CATG	4 cut(s)	46, 505, 701, 865
NlaIV	GGNNCC	2 cut(s)	552, 1020
NspI	RCATGY	1 cut(s)	701
PaeI	GCATGC	1 cut(s)	701
PaeR7I	CTCGAG	1 cut(s)	881
PaqCI	CACCTGC	1 cut(s)	709
PcsI	WCGNNNNNNNCGW	1 cut(s)	130
PfeI	GAWTC	4 cut(s)	192, 370, 520, 621
PfoI	TCCNGGA	1 cut(s)	947
PinAI	ACCGGT	1 cut(s)	35
PkrI	GCNGC	7 cut(s)	18, 679, 826, 843, 934, 937, 1079
Ple19I	CGATCG	1 cut(s)	1026
PleI	GAGTC	3 cut(s)	341, 371, 873
PpsI	GAGTC	3 cut(s)	341, 371, 873
PspFI	CCCAGC	1 cut(s)	417
PspN4I	GGNNCC	2 cut(s)	552, 1020
PspPI	GGNCC	3 cut(s)	33, 551, 605
PspXI	VCTCGAGB	1 cut(s)	881
PstI	CTGCAG	1 cut(s)	826
PstNI	CAGNNNCTG	1 cut(s)	935
PsuI	RGATCY	1 cut(s)	340
PvuI	CGATCG	1 cut(s)	1026
PvuII	CAGCTG	2 cut(s)	680, 932
RsaI	GTAC	4 cut(s)	470, 533, 728, 887
RsaNI	GTAC	4 cut(s)	469, 532, 727, 886
RseI	CAYNNNNRTG	1 cut(s)	506
SaqAI	TTAA	3 cut(s)	219, 435, 1047
SatI	GCNGC	7 cut(s)	17, 678, 825, 842, 933, 936, 1078
Sau3AI	GATC	9 cut(s)	136, 267, 340, 390, 412, 560, 591, 1023, 1027
Sau96I	GGNCC	3 cut(s)	33, 551, 605
SchI	GAGTC	3 cut(s)	342, 372, 873
ScrFI	CCNGG	1 cut(s)	949
SduI	GDGCHC	1 cut(s)	111
SfaNI	GCATC	2 cut(s)	91, 309
SfcI	CTRYAG	2 cut(s)	822, 828
Sfr274I	CTCGAG	1 cut(s)	881
SinI	GGWCC	2 cut(s)	33, 605
SlaI	CTCGAG	1 cut(s)	881
SmiMI	CAYNNNNRTG	1 cut(s)	506
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
SpeI	ACTAGT	1 cut(s)	377
SphI	GCATGC	1 cut(s)	701
Sse9I	AATT	1 cut(s)	114
SsiI	CCGC	1 cut(s)	798
SspMI	CTAG	2 cut(s)	378, 731
StyD4I	CCNGG	1 cut(s)	947
TaaI	ACNGT	3 cut(s)	568, 577, 910
TaqI	TCGA	8 cut(s)	95, 208, 254, 368, 563, 657, 882, 1026
TasI	AATT	1 cut(s)	114
TatI	WGTACW	1 cut(s)	531
TfiI	GAWTC	4 cut(s)	192, 370, 520, 621
Tru1I	TTAA	3 cut(s)	219, 435, 1047
Tru9I	TTAA	3 cut(s)	219, 435, 1047
TscAI	CASTG	5 cut(s)	315, 400, 498, 896, 915
TseI	GCWGC	7 cut(s)	16, 677, 824, 841, 932, 935, 1077
TspDTI	ATGAA	7 cut(s)	31, 81, 335, 420, 687, 806, 878
TspRI	CASTG	5 cut(s)	315, 400, 498, 896, 915
VpaK11BI	GGWCC	2 cut(s)	33, 605
XapI	RAATTY	1 cut(s)	114
XceI	RCATGY	1 cut(s)	701
XcmI	CCANNNNNNNNNTGG	1 cut(s)	907
XhoI	CTCGAG	1 cut(s)	881
XmiI	GTMKAC	2 cut(s)	612, 802
XspI	CTAG	2 cut(s)	378, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.