FvH4_4g24810

Carboxylesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016315
Physical Location & Seq
Forward (+)
26820733 .. 26822270
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g24810.t1

Sequence Viewer

Length: 1173 bp
ATGCCAAGCCTAAGCTTACAGCTCCAAAGCTTGTTCTTCAAGTACCACCTCCGCCACCAGCTCCAGACTCTAACCCAAACCCAAACCCGCGACAAATTCGGCACCACTTCCCGACCCGACCACCCCTCCGTTCCCGCCAACCCGACTTTCCGAAACGGCGTCGCCACCAAGGACCTCCACATCGACCCTTTATCCTCCCTCTCCCTCCGCATCTTCCTCCCGGAGACAGTCCTCCTCAAAGACTCCGCCTTTGACTCTAACGGCGTCGTCTACGGCGGATACACTCCCCCGGCCGGGAAGCGCCACCGCAAGCTGCCGATCATGCTGCAGTTCCACGGCGGCGGGTTCGTCGTCGGGAGCAACGACACGTCGTGTAATGATATGTTCTGCCGGAGGATGGCGAAGCTGTGCGATGTGATCGTGGTGGCGGTGGGGTACAGGCTGGCGCCGGAGAGTCCGTACCCGGCTGCGTTTGAGGATGGGATGGCGGTGTTGAGTTGGTTGGCCAAGCAGGCCAACTTGGCGGCGGTGAGGAGGAAGGGGAGGGGTAATTCTGGTAATCAGCAGGGGATTTTCGACAGCTTTGGGTCGTCTATGGTTGAGCCTTGGTTGGCTGCTCATGGAGAACCTTCTAGGTGTGTACTCCTCGGAGTGAGCTGTGGTGCAAACATAGCGGATTTCGTAGCTCGGAAGGCTGTGGAGGCGGGAAGCCTCTTGGATCCTGTAAAAGTGGTGGCTCAAGTCCTGATGTACCCTTTCTTCATCGGAAGCGTTCCTACCAAGTCTGAGATTAAGTTGGCAAATTCCTACTTTTATGACAAGGCTATGTGTATGATGGCATGGAAGCTATTTCTACCAGAGGAAGAGTTTGATTTAGACCACCCTGCTGGCAACCCTCTTGTACCTGGGAGAGGGCCGCCCTTAAAGACCATGCCTCCCACACTTACAATTGTTGCTGAGCATGATTGGATGCGCGACAGGGGTATCGCCTACTCTGAAGAACTGCGGAAGGCTAATGTGGATGCACCTCTTCTTGAGTACAAGAATGCTGTTCATGAGTTTGCTACTCTTGATGTGCTCCTCGAAACACCCCAGGCACAGGCTTGTGCTGATGATATCACTATATGGGTCAAGAAGTATATATCACTCAGAGGTGGCGAGTTTTCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

391

Amino Acids

43.04

Weight (kDa)

7.63

Isoelectric Point (pI)

47.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 94 - 149 7.6e-08 Carboxylesterase family
BD-FAE PF20434 100 - 173 2.9e-07 BD-FAE
Abhydrolase_3 PF07859 108 - 355 7.7e-58 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016315)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24810
malus_domestica MD13G1108800.v1.1
prunus_persica Prupe.1G237400_v2.0.a1
pyrus_communis pycom13g09430
rosa_chinensis RchiOBHm_Chr4g0431891
rosa_laevigata RLG00000006878
rosa_multiflora Rmu_sc0004965.1_g000005 Rmu_sc0037399.1_g000002
rosa_roxburghii Rroxscaffold_5G00373320
rosa_rugosa Rorug04G0252800
rosa_samantha Rh4AG310000 Rh4BG317100 Rh4CG332400 Rh4DG312000
rosa_wichuraiana Rw4G026970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 101, 445
AccI GTMKAC 1 cut(s) 270
AccII CGCG 2 cut(s) 90, 975
AclWI GGATC 2 cut(s) 713, 726
AcoI YGGCCR 2 cut(s) 291, 504
AcsI RAATTY 2 cut(s) 95, 802
AcuI CTGAAG 1 cut(s) 1017
AcyI GRCGYC 3 cut(s) 159, 264, 446
AdeI CACNNNGTG 1 cut(s) 372
AfaI GTAC 7 cut(s) 44, 437, 461, 642, 752, 903, 1040
AfiI CCNNNNNNNGG 5 cut(s) 293, 294, 397, 911, 1099
AflIII ACRYGT 1 cut(s) 366
AgsI TTSAA 1 cut(s) 40
AjiI CACGTC 1 cut(s) 369
AjnI CCWGG 2 cut(s) 904, 1092
AjuI GAANNNNNNNTTGG 2 cut(s) 131, 163
Alw21I GWGCWC 1 cut(s) 1080
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 2 cut(s) 713, 726
AoxI GGCC 4 cut(s) 291, 504, 513, 914
ApeKI GCWGC 4 cut(s) 313, 325, 467, 614
ApoI RAATTY 2 cut(s) 95, 802
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
AspLEI GCGC 3 cut(s) 303, 448, 975
AspS9I GGNCC 2 cut(s) 172, 914
AsuC2I CCSGG 4 cut(s) 221, 290, 295, 464
AsuHPI GGTGA 1 cut(s) 541
AvaII GGWCC 1 cut(s) 172
BaeI ACNNNNGTAYC 2 cut(s) 967, 1000
BalI TGGCCA 1 cut(s) 506
BamHI GGATCC 1 cut(s) 718
BanI GGYRCC 2 cut(s) 101, 445
BarI GAAGNNNNNNTAC 4 cut(s) 743, 760, 775, 792
Bbv12I GWGCWC 1 cut(s) 1080
BbvI GCAGC 4 cut(s) 300, 312, 454, 601
BccI CCATC 4 cut(s) 391, 473, 478, 829
BceAI ACGGC 4 cut(s) 172, 277, 289, 352
BcgI CGANNNNNNTGC 2 cut(s) 307, 341
BciT130I CCWGG 2 cut(s) 906, 1094
BciVI GTATCC 1 cut(s) 272
BcnI CCSGG 4 cut(s) 221, 290, 295, 464
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 1 cut(s) 633
BfmI CTRYAG 1 cut(s) 326
BfoI RGCGCY 2 cut(s) 304, 449
BfuI GTATCC 1 cut(s) 272
BglI GCCNNNNNGGC 2 cut(s) 512, 521
BisI GCNGC 7 cut(s) 314, 326, 340, 468, 525, 615, 917
BlpI GCTNAGC 1 cut(s) 957
BlsI GCNGC 7 cut(s) 315, 327, 341, 469, 526, 616, 918
Bme1390I CCNGG 6 cut(s) 221, 290, 295, 464, 906, 1094
Bme18I GGWCC 1 cut(s) 172
BmgBI CACGTC 1 cut(s) 369
BmgT120I GGNCC 2 cut(s) 172, 914
BmiI GGNNCC 3 cut(s) 103, 447, 720
BmrFI CCNGG 6 cut(s) 221, 290, 295, 464, 906, 1094
BmsI GCATC 3 cut(s) 219, 960, 1012
BpmI CTGGAG 1 cut(s) 47
Bpu10I CCTNAGC 1 cut(s) 11
Bpu1102I GCTNAGC 1 cut(s) 957
BpuEI CTTGAG 2 cut(s) 723, 1055
BpuMI CCSGG 4 cut(s) 221, 290, 295, 464
BsaHI GRCGYC 3 cut(s) 159, 264, 446
BsaJI CCNNGG 7 cut(s) 168, 288, 334, 605, 646, 905, 1092
BsaXI ACNNNNNCTCC 6 cut(s) 110, 140, 443, 473, 919, 949
Bsc4I CCNNNNNNNGG 5 cut(s) 293, 294, 397, 911, 1099
BseBI CCWGG 2 cut(s) 906, 1094
BseDI CCNNGG 7 cut(s) 168, 288, 334, 605, 646, 905, 1092
BseGI GGATG 5 cut(s) 402, 484, 489, 975, 1027
BseLI CCNNNNNNNGG 5 cut(s) 293, 294, 397, 911, 1099
BseMII CTCAG 3 cut(s) 777, 948, 1162
BseRI GAGGAG 4 cut(s) 224, 547, 635, 1070
BseX3I CGGCCG 1 cut(s) 291
BseXI GCAGC 4 cut(s) 300, 312, 454, 601
Bsh1236I CGCG 2 cut(s) 90, 975
Bsh1285I CGRYCG 1 cut(s) 294
BshFI GGCC 4 cut(s) 293, 506, 515, 916
BshNI GGYRCC 2 cut(s) 101, 445
BsiEI CGRYCG 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 1080
BsiSI CCGG 6 cut(s) 221, 290, 294, 391, 449, 464
BslI CCNNNNNNNGG 5 cut(s) 293, 294, 397, 911, 1099
BsmAI GTCTC 1 cut(s) 218
BsmI GAATGC 1 cut(s) 1051
BsnI GGCC 4 cut(s) 293, 506, 515, 916
Bsp1286I GDGCHC 1 cut(s) 1080
Bsp143I GATC 3 cut(s) 318, 417, 718
Bsp1720I GCTNAGC 1 cut(s) 957
BspANI GGCC 4 cut(s) 293, 506, 515, 916
BspCNI CTCAG 3 cut(s) 778, 949, 1161
BspFNI CGCG 2 cut(s) 90, 975
BspHI TCATGA 1 cut(s) 1054
BspLI GGNNCC 3 cut(s) 103, 447, 720
BspMAI CTGCAG 1 cut(s) 330
BspPI GGATC 2 cut(s) 713, 726
BspT107I GGYRCC 2 cut(s) 101, 445
BssECI CCNNGG 7 cut(s) 168, 288, 334, 605, 646, 905, 1092
BssMI GATC 3 cut(s) 318, 417, 718
BssNI GRCGYC 3 cut(s) 159, 264, 446
BssT1I CCWWGG 2 cut(s) 168, 605
Bst2UI CCWGG 2 cut(s) 906, 1094
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 2 cut(s) 858, 1035
BstACI GRCGYC 3 cut(s) 159, 264, 446
BstC8I GCNNGC 4 cut(s) 311, 444, 513, 889
BstDEI CTNAG 4 cut(s) 11, 786, 957, 1148
BstDSI CCRYGG 1 cut(s) 334
BstENI CCTNNNNNAGG 1 cut(s) 909
BstF5I GGATG 5 cut(s) 402, 484, 489, 975, 1027
BstFNI CGCG 2 cut(s) 90, 975
BstH2I RGCGCY 2 cut(s) 304, 449
BstHHI GCGC 3 cut(s) 303, 448, 975
BstKTI GATC 3 cut(s) 321, 420, 721
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 3 cut(s) 318, 417, 718
BstMCI CGRYCG 1 cut(s) 294
BstMWI GCNNNNNNNGC 6 cut(s) 322, 512, 521, 671, 692, 701
BstNI CCWGG 2 cut(s) 906, 1094
BstSCI CCNGG 6 cut(s) 219, 288, 293, 462, 904, 1092
BstSFI CTRYAG 1 cut(s) 326
BstUI CGCG 2 cut(s) 90, 975
BstV1I GCAGC 4 cut(s) 300, 312, 454, 601
BstX2I RGATCY 1 cut(s) 718
BstXI CCANNNNNNTGG 1 cut(s) 887
BstYI RGATCY 1 cut(s) 718
BstZI CGGCCG 1 cut(s) 291
BsuI GTATCC 1 cut(s) 272
BsuRI GGCC 4 cut(s) 293, 506, 515, 916
BtgI CCRYGG 1 cut(s) 334
BtgZI GCGATG 1 cut(s) 426
BtrI CACGTC 1 cut(s) 369
BtsCI GGATG 5 cut(s) 402, 484, 489, 975, 1027
Cac8I GCNNGC 4 cut(s) 311, 444, 513, 889
CciI TCATGA 1 cut(s) 1054
CfoI GCGC 3 cut(s) 303, 448, 975
Cfr13I GGNCC 2 cut(s) 172, 914
CseI GACGC 2 cut(s) 148, 253
Csp6I GTAC 7 cut(s) 43, 436, 460, 641, 751, 902, 1039
CviAII CATG 6 cut(s) 322, 620, 840, 931, 962, 1055
CviQI GTAC 7 cut(s) 43, 436, 460, 641, 751, 902, 1039
DdeI CTNAG 4 cut(s) 11, 786, 957, 1148
DinI GGCGCC 1 cut(s) 447
DpnI GATC 3 cut(s) 320, 419, 720
DpnII GATC 3 cut(s) 318, 417, 718
DraIII CACNNNGTG 1 cut(s) 372
EaeI YGGCCR 2 cut(s) 291, 504
EagI CGGCCG 1 cut(s) 291
Eam1104I CTCTTC 2 cut(s) 858, 1035
EarI CTCTTC 2 cut(s) 858, 1035
EciI GGCGGA 3 cut(s) 41, 235, 291
EclXI CGGCCG 1 cut(s) 291
Eco130I CCWWGG 2 cut(s) 168, 605
Eco32I GATATC 1 cut(s) 1117
Eco47I GGWCC 1 cut(s) 172
Eco52I CGGCCG 1 cut(s) 291
Eco57I CTGAAG 1 cut(s) 1017
EcoNI CCTNNNNNAGG 1 cut(s) 909
EcoO109I RGGNCCY 1 cut(s) 172
EcoRII CCWGG 2 cut(s) 904, 1092
EcoRV GATATC 1 cut(s) 1117
EcoT14I CCWWGG 2 cut(s) 168, 605
EgeI GGCGCC 1 cut(s) 447
EheI GGCGCC 1 cut(s) 447
ErhI CCWWGG 2 cut(s) 168, 605
FaeI CATG 6 cut(s) 325, 623, 843, 934, 965, 1058
FatI CATG 6 cut(s) 321, 619, 839, 930, 961, 1054
FauI CCCGC 4 cut(s) 95, 142, 335, 697
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 7 cut(s) 314, 326, 340, 468, 525, 615, 917
FokI GGATG 5 cut(s) 409, 491, 496, 982, 1034
Fsp4HI GCNGC 7 cut(s) 314, 326, 340, 468, 525, 615, 917
FspBI CTAG 1 cut(s) 633
GlaI GCGC 3 cut(s) 302, 447, 974
GluI GCNGC 7 cut(s) 314, 326, 340, 468, 525, 615, 917
GsuI CTGGAG 1 cut(s) 47
HaeII RGCGCY 2 cut(s) 304, 449
HaeIII GGCC 4 cut(s) 293, 506, 515, 916
HapII CCGG 6 cut(s) 221, 290, 294, 391, 449, 464
HgaI GACGC 2 cut(s) 148, 253
HhaI GCGC 3 cut(s) 303, 448, 975
Hin1I GRCGYC 3 cut(s) 159, 264, 446
Hin1II CATG 6 cut(s) 325, 623, 843, 934, 965, 1058
Hin6I GCGC 3 cut(s) 301, 446, 973
HinP1I GCGC 3 cut(s) 301, 446, 973
HindIII AAGCTT 2 cut(s) 13, 28
HinfI GANTC 4 cut(s) 67, 242, 254, 454
HpaII CCGG 6 cut(s) 221, 290, 294, 391, 449, 464
HphI GGTGA 1 cut(s) 541
Hpy166II GTNNAC 2 cut(s) 271, 641
Hpy188I TCNGA 7 cut(s) 152, 650, 690, 767, 787, 997, 1151
Hpy188III TCNNGA 8 cut(s) 64, 111, 355, 745, 1034, 1055, 1070, 1132
Hpy8I GTNNAC 2 cut(s) 271, 641
Hpy99I CGWCG 5 cut(s) 164, 269, 353, 356, 373
HpyAV CCTTC 4 cut(s) 532, 639, 685, 1003
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 368
HpyCH4V TGCA 3 cut(s) 328, 665, 1025
HpyF10VI GCNNNNNNNGC 6 cut(s) 322, 512, 521, 671, 692, 701
HpyF3I CTNAG 4 cut(s) 11, 786, 957, 1148
HpySE526I ACGT 1 cut(s) 368
Hsp92I GRCGYC 3 cut(s) 159, 264, 446
Hsp92II CATG 6 cut(s) 325, 623, 843, 934, 965, 1058
HspAI GCGC 3 cut(s) 301, 446, 973
KasI GGCGCC 1 cut(s) 445
Kzo9I GATC 3 cut(s) 318, 417, 718
LmnI GCTCC 4 cut(s) 27, 66, 357, 1083
Lsp1109I GCAGC 4 cut(s) 300, 312, 454, 601
LweI GCATC 3 cut(s) 219, 960, 1012
MaeI CTAG 1 cut(s) 633
MaeII ACGT 1 cut(s) 368
MalI GATC 3 cut(s) 320, 419, 720
MboI GATC 3 cut(s) 318, 417, 718
MboII GAAGA 6 cut(s) 28, 205, 751, 875, 1010, 1022
MfeI CAATTG 1 cut(s) 948
MflI RGATCY 1 cut(s) 718
MhlI GDGCHC 1 cut(s) 1080
MlsI TGGCCA 1 cut(s) 506
MluCI AATT 4 cut(s) 95, 550, 802, 948
MluNI TGGCCA 1 cut(s) 506
Mly113I GGCGCC 1 cut(s) 446
MlyI GAGTC 4 cut(s) 61, 236, 248, 463
Mox20I TGGCCA 1 cut(s) 506
MscI TGGCCA 1 cut(s) 506
MseI TTAA 2 cut(s) 792, 923
Msp20I TGGCCA 1 cut(s) 506
MspI CCGG 6 cut(s) 221, 290, 294, 391, 449, 464
MspR9I CCNGG 6 cut(s) 221, 290, 295, 464, 906, 1094
MunI CAATTG 1 cut(s) 948
Mva1269I GAATGC 1 cut(s) 1051
MvaI CCWGG 2 cut(s) 906, 1094
MvnI CGCG 2 cut(s) 90, 975
MwoI GCNNNNNNNGC 6 cut(s) 322, 512, 521, 671, 692, 701
NarI GGCGCC 1 cut(s) 446
NciI CCSGG 4 cut(s) 221, 290, 295, 464
NdeII GATC 3 cut(s) 318, 417, 718
NlaIII CATG 6 cut(s) 325, 623, 843, 934, 965, 1058
NlaIV GGNNCC 3 cut(s) 103, 447, 720
PagI TCATGA 1 cut(s) 1054
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PctI GAATGC 1 cut(s) 1051
PfoI TCCNGGA 1 cut(s) 219
PkrI GCNGC 7 cut(s) 315, 327, 341, 469, 526, 616, 918
PleI GAGTC 4 cut(s) 61, 236, 248, 462
PluTI GGCGCC 1 cut(s) 449
PpsI GAGTC 4 cut(s) 61, 236, 248, 462
PpuMI RGGWCCY 1 cut(s) 172
Psp5II RGGWCCY 1 cut(s) 172
Psp6I CCWGG 2 cut(s) 904, 1092
PspGI CCWGG 2 cut(s) 904, 1092
PspN4I GGNNCC 3 cut(s) 103, 447, 720
PspPI GGNCC 2 cut(s) 172, 914
PspPPI RGGWCCY 1 cut(s) 172
PstI CTGCAG 1 cut(s) 330
PsuI RGATCY 1 cut(s) 718
RsaI GTAC 7 cut(s) 44, 437, 461, 642, 752, 903, 1040
RsaNI GTAC 7 cut(s) 43, 436, 460, 641, 751, 902, 1039
SaqAI TTAA 2 cut(s) 792, 923
SatI GCNGC 7 cut(s) 314, 326, 340, 468, 525, 615, 917
Sau3AI GATC 3 cut(s) 318, 417, 718
Sau96I GGNCC 2 cut(s) 172, 914
SchI GAGTC 4 cut(s) 61, 236, 248, 463
ScrFI CCNGG 6 cut(s) 221, 290, 295, 464, 906, 1094
SduI GDGCHC 1 cut(s) 1080
SfaNI GCATC 3 cut(s) 219, 960, 1012
SfcI CTRYAG 1 cut(s) 326
SfiI GGCCNNNNNGGCC 1 cut(s) 512
SfoI GGCGCC 1 cut(s) 447
SinI GGWCC 1 cut(s) 172
SmlI CTYRAG 2 cut(s) 738, 1034
SmoI CTYRAG 2 cut(s) 738, 1034
Sse9I AATT 4 cut(s) 95, 550, 802, 948
SspDI GGCGCC 1 cut(s) 445
SspMI CTAG 1 cut(s) 633
StyD4I CCNGG 6 cut(s) 219, 288, 293, 462, 904, 1092
StyI CCWWGG 2 cut(s) 168, 605
TaaI ACNGT 1 cut(s) 229
TaiI ACGT 1 cut(s) 371
TaqI TCGA 3 cut(s) 183, 576, 1083
TasI AATT 4 cut(s) 95, 550, 802, 948
TatI WGTACW 2 cut(s) 640, 1038
TauI GCSGC 3 cut(s) 342, 527, 919
Tru1I TTAA 2 cut(s) 792, 923
Tru9I TTAA 2 cut(s) 792, 923
TseI GCWGC 4 cut(s) 313, 325, 467, 614
TspDTI ATGAA 2 cut(s) 751, 1043
TspGWI ACGGA 2 cut(s) 118, 447
VpaK11BI GGWCC 1 cut(s) 172
XagI CCTNNNNNAGG 1 cut(s) 909
XapI RAATTY 2 cut(s) 95, 802
XmiI GTMKAC 1 cut(s) 270
XspI CTAG 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.