Rmu_sc0004965.1_g000005

Carboxylesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004965.1
OG0016315
Physical Location & Seq
Forward (+)
30272 .. 31750
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004965.1_g000005.1.cds

Sequence Viewer

Length: 858 bp
atgctgcagttccacggcggcggctttgtcatcgggagcaacggcacggcgtgtaacgatgcgttttgcaggaggatggcgaagctgtgcgacgtgattgtggtggcggtgggttacaggctggcgccggagagtccgtacccggcggcgtttgaggatgggatgttggtgttgaactggctggccaagcaggccaacttggcggcggtgagaaatcgcaatgggaggaagggaaatggttctggtcatccgggtattttcgatagctttgggtcgtccatggttgagccttggttggctgctcatggtgaaccttctaggtgtatactcctcggagtgagctgtggtgctaacatagcagattatgtagctcggaaggctgtggaagcgagcagcctcttggatcctctaaaagtggtggctcaaatcctgatgtaccctttcttcattggaagcgttcccaccaagtccgagattaagttggcaaattcctacttttatgacaaggctacttgtatgatggcatggaagctatttctacccaaggaagagttttatttagaccacccagctggcaaccctctcgttcctgggagagggccgcccttaaagactatgcctcccacacttacaattgttgcagagcatgattggatgcgtgaccggggaattgcttactcagaagcattgcggaaggctaatgtggatgcacctcttcttgagtacaagaatgctgttcatgagtttgctactcttgatgtgctcctccagacaccccaggccctggcttgtgctgatgatatcacaatatgggtcaagaagtatatatcactcagaggtggtgagttttcttactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

285

Amino Acids

31.18

Weight (kDa)

7.59

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016315)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24810
malus_domestica MD13G1108800.v1.1
prunus_persica Prupe.1G237400_v2.0.a1
pyrus_communis pycom13g09430
rosa_chinensis RchiOBHm_Chr4g0431891
rosa_laevigata RLG00000006878
rosa_multiflora Rmu_sc0004965.1_g000005 Rmu_sc0037399.1_g000002
rosa_roxburghii Rroxscaffold_5G00373320
rosa_rugosa Rorug04G0252800
rosa_samantha Rh4AG310000 Rh4BG317100 Rh4CG332400 Rh4DG312000
rosa_wichuraiana Rw4G026970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 124
AccB7I CCANNNNNTGG 1 cut(s) 784
AccI GTMKAC 1 cut(s) 325
AciI CCGC 8 cut(s) 18, 21, 107, 146, 203, 206, 602, 691
AclWI GGATC 2 cut(s) 398, 411
AcoI YGGCCR 1 cut(s) 183
AcsI RAATTY 1 cut(s) 487
AcyI GRCGYC 1 cut(s) 125
AdeI CACNNNGTG 1 cut(s) 51
AfaI GTAC 3 cut(s) 140, 437, 725
AfiI CCNNNNNNNGG 2 cut(s) 596, 784
AgsI TTSAA 1 cut(s) 175
AjiI CACGTC 1 cut(s) 94
AjnI CCWGG 3 cut(s) 589, 777, 783
AluBI AGCT 6 cut(s) 85, 267, 342, 371, 532, 572
AluI AGCT 6 cut(s) 85, 267, 342, 371, 532, 572
Alw21I GWGCWC 1 cut(s) 765
AlwI GGATC 2 cut(s) 398, 411
AlwNI CAGNNNCTG 1 cut(s) 784
AoxI GGCC 4 cut(s) 183, 192, 599, 780
ApeKI GCWGC 3 cut(s) 4, 299, 393
ApoI RAATTY 1 cut(s) 487
Asp700I GAANNNNTTC 1 cut(s) 238
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 2 cut(s) 599, 781
AsuC2I CCSGG 3 cut(s) 143, 252, 665
AsuHPI GGTGA 3 cut(s) 220, 320, 854
BalI TGGCCA 1 cut(s) 185
BamHI GGATCC 1 cut(s) 403
BanI GGYRCC 1 cut(s) 124
BarI GAAGNNNNNNTAC 2 cut(s) 428, 460
Bbv12I GWGCWC 1 cut(s) 765
BbvI GCAGC 2 cut(s) 286, 405
BccI CCATC 3 cut(s) 70, 152, 514
BceAI ACGGC 3 cut(s) 31, 58, 63
BcgI CGANNNNNNTGC 2 cut(s) 565, 599
BciT130I CCWGG 3 cut(s) 591, 779, 785
BcnI CCSGG 3 cut(s) 143, 252, 665
BfaI CTAG 1 cut(s) 318
BfmI CTRYAG 1 cut(s) 5
BfoI RGCGCY 1 cut(s) 128
BglI GCCNNNNNGGC 2 cut(s) 191, 200
BisI GCNGC 8 cut(s) 5, 19, 22, 147, 204, 300, 394, 602
BlsI GCNGC 8 cut(s) 6, 20, 23, 148, 205, 301, 395, 603
Bme1390I CCNGG 6 cut(s) 143, 252, 591, 665, 779, 785
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 599, 781
BmiI GGNNCC 2 cut(s) 126, 405
BmrFI CCNGG 6 cut(s) 143, 252, 591, 665, 779, 785
BmsI GCATC 3 cut(s) 49, 645, 697
BpmI CTGGAG 1 cut(s) 752
BpuEI CTTGAG 1 cut(s) 740
BpuMI CCSGG 3 cut(s) 143, 252, 665
BsaHI GRCGYC 1 cut(s) 125
BsaJI CCNNGG 9 cut(s) 13, 279, 290, 331, 543, 590, 664, 777, 783
BsaXI ACNNNNNCTCC 4 cut(s) 122, 152, 604, 634
Bsc4I CCNNNNNNNGG 2 cut(s) 596, 784
Bse1I ACTGG 1 cut(s) 182
Bse3DI GCAATG 2 cut(s) 226, 686
BseBI CCWGG 3 cut(s) 591, 779, 785
BseDI CCNNGG 9 cut(s) 13, 279, 290, 331, 543, 590, 664, 777, 783
BseGI GGATG 6 cut(s) 81, 163, 168, 247, 660, 712
BseLI CCNNNNNNNGG 2 cut(s) 596, 784
BseMI GCAATG 2 cut(s) 226, 686
BseMII CTCAG 2 cut(s) 693, 847
BseNI ACTGG 1 cut(s) 182
BseRI GAGGAG 2 cut(s) 320, 755
BseXI GCAGC 2 cut(s) 286, 405
BseYI CCCAGC 1 cut(s) 568
BshFI GGCC 4 cut(s) 185, 194, 601, 782
BshNI GGYRCC 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 765
BsiSI CCGG 4 cut(s) 128, 143, 251, 664
BslI CCNNNNNNNGG 2 cut(s) 596, 784
BsmI GAATGC 1 cut(s) 736
BsnI GGCC 4 cut(s) 185, 194, 601, 782
Bsp1286I GDGCHC 1 cut(s) 765
Bsp143I GATC 1 cut(s) 403
Bsp19I CCATGG 1 cut(s) 279
BspACI CCGC 8 cut(s) 18, 21, 107, 146, 203, 206, 602, 691
BspANI GGCC 4 cut(s) 185, 194, 601, 782
BspCNI CTCAG 2 cut(s) 692, 846
BspHI TCATGA 1 cut(s) 739
BspLI GGNNCC 2 cut(s) 126, 405
BspMAI CTGCAG 1 cut(s) 9
BspPI GGATC 2 cut(s) 398, 411
BspT107I GGYRCC 1 cut(s) 124
BsrDI GCAATG 2 cut(s) 226, 686
BsrI ACTGG 1 cut(s) 182
BssECI CCNNGG 9 cut(s) 13, 279, 290, 331, 543, 590, 664, 777, 783
BssMI GATC 1 cut(s) 403
BssNAI GTATAC 1 cut(s) 326
BssNI GRCGYC 1 cut(s) 125
BssT1I CCWWGG 3 cut(s) 279, 290, 543
Bst1107I GTATAC 1 cut(s) 326
Bst2UI CCWGG 3 cut(s) 591, 779, 785
Bst6I CTCTTC 2 cut(s) 543, 720
BstACI GRCGYC 1 cut(s) 125
BstC8I GCNNGC 5 cut(s) 123, 183, 192, 391, 574
BstDEI CTNAG 2 cut(s) 679, 833
BstDSI CCRYGG 2 cut(s) 13, 279
BstENI CCTNNNNNAGG 1 cut(s) 594
BstF5I GGATG 6 cut(s) 81, 163, 168, 247, 660, 712
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 1 cut(s) 406
BstMBI GATC 1 cut(s) 403
BstMWI GCNNNNNNNGC 6 cut(s) 187, 191, 200, 356, 377, 386
BstNI CCWGG 3 cut(s) 591, 779, 785
BstSCI CCNGG 6 cut(s) 141, 250, 589, 663, 777, 783
BstSFI CTRYAG 1 cut(s) 5
BstV1I GCAGC 2 cut(s) 286, 405
BstX2I RGATCY 1 cut(s) 403
BstXI CCANNNNNNTGG 1 cut(s) 572
BstYI RGATCY 1 cut(s) 403
BstZ17I GTATAC 1 cut(s) 326
BsuRI GGCC 4 cut(s) 185, 194, 601, 782
BtgI CCRYGG 2 cut(s) 13, 279
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 6 cut(s) 81, 163, 168, 247, 660, 712
Cac8I GCNNGC 5 cut(s) 123, 183, 192, 391, 574
CaiI CAGNNNCTG 1 cut(s) 784
CciI TCATGA 1 cut(s) 739
CfoI GCGC 1 cut(s) 127
Cfr13I GGNCC 2 cut(s) 599, 781
Csp6I GTAC 3 cut(s) 139, 436, 724
CviAII CATG 5 cut(s) 280, 305, 525, 647, 740
CviQI GTAC 3 cut(s) 139, 436, 724
DdeI CTNAG 2 cut(s) 679, 833
DinI GGCGCC 1 cut(s) 126
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
DraIII CACNNNGTG 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 183
Eam1104I CTCTTC 2 cut(s) 543, 720
EarI CTCTTC 2 cut(s) 543, 720
Eco130I CCWWGG 3 cut(s) 279, 290, 543
Eco32I GATATC 1 cut(s) 802
EcoNI CCTNNNNNAGG 1 cut(s) 594
EcoO109I RGGNCCY 1 cut(s) 781
EcoRII CCWGG 3 cut(s) 589, 777, 783
EcoRV GATATC 1 cut(s) 802
EcoT14I CCWWGG 3 cut(s) 279, 290, 543
EgeI GGCGCC 1 cut(s) 126
EheI GGCGCC 1 cut(s) 126
ErhI CCWWGG 3 cut(s) 279, 290, 543
FaeI CATG 5 cut(s) 283, 308, 528, 650, 743
FatI CATG 5 cut(s) 279, 304, 524, 646, 739
FblI GTMKAC 1 cut(s) 325
Fnu4HI GCNGC 8 cut(s) 5, 19, 22, 147, 204, 300, 394, 602
FokI GGATG 6 cut(s) 88, 170, 175, 234, 667, 719
Fsp4HI GCNGC 8 cut(s) 5, 19, 22, 147, 204, 300, 394, 602
FspBI CTAG 1 cut(s) 318
GlaI GCGC 1 cut(s) 126
GluI GCNGC 8 cut(s) 5, 19, 22, 147, 204, 300, 394, 602
GsaI CCCAGC 1 cut(s) 572
GsuI CTGGAG 1 cut(s) 752
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 4 cut(s) 185, 194, 601, 782
HapII CCGG 4 cut(s) 128, 143, 251, 664
HhaI GCGC 1 cut(s) 127
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 5 cut(s) 283, 308, 528, 650, 743
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HinfI GANTC 1 cut(s) 133
HpaII CCGG 4 cut(s) 128, 143, 251, 664
HphI GGTGA 3 cut(s) 220, 320, 854
Hpy166II GTNNAC 2 cut(s) 311, 326
Hpy188I TCNGA 5 cut(s) 335, 375, 472, 682, 836
Hpy188III TCNNGA 7 cut(s) 34, 430, 719, 740, 755, 769, 817
Hpy8I GTNNAC 2 cut(s) 311, 326
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 4 cut(s) 223, 324, 370, 688
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 4 cut(s) 7, 69, 641, 710
HpyF10VI GCNNNNNNNGC 6 cut(s) 187, 191, 200, 356, 377, 386
HpyF3I CTNAG 2 cut(s) 679, 833
HpySE526I ACGT 1 cut(s) 93
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 5 cut(s) 283, 308, 528, 650, 743
HspAI GCGC 1 cut(s) 125
KasI GGCGCC 1 cut(s) 124
Kzo9I GATC 1 cut(s) 403
LmnI GCTCC 2 cut(s) 36, 768
Lsp1109I GCAGC 2 cut(s) 286, 405
LweI GCATC 3 cut(s) 49, 645, 697
MaeI CTAG 1 cut(s) 318
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 3 cut(s) 53, 113, 659
MalI GATC 1 cut(s) 405
MboI GATC 1 cut(s) 403
MboII GAAGA 3 cut(s) 436, 560, 707
MfeI CAATTG 1 cut(s) 633
MflI RGATCY 1 cut(s) 403
MhlI GDGCHC 1 cut(s) 765
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 3 cut(s) 487, 633, 669
MluNI TGGCCA 1 cut(s) 185
Mly113I GGCGCC 1 cut(s) 125
MlyI GAGTC 1 cut(s) 142
Mox20I TGGCCA 1 cut(s) 185
MroXI GAANNNNTTC 1 cut(s) 238
MscI TGGCCA 1 cut(s) 185
MseI TTAA 2 cut(s) 477, 608
Msp20I TGGCCA 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 572
MspI CCGG 4 cut(s) 128, 143, 251, 664
MspR9I CCNGG 6 cut(s) 143, 252, 591, 665, 779, 785
MunI CAATTG 1 cut(s) 633
Mva1269I GAATGC 1 cut(s) 736
MvaI CCWGG 3 cut(s) 591, 779, 785
MwoI GCNNNNNNNGC 6 cut(s) 187, 191, 200, 356, 377, 386
NarI GGCGCC 1 cut(s) 125
NciI CCSGG 3 cut(s) 143, 252, 665
NcoI CCATGG 1 cut(s) 279
NdeII GATC 1 cut(s) 403
NlaIII CATG 5 cut(s) 283, 308, 528, 650, 743
NlaIV GGNNCC 2 cut(s) 126, 405
NmuCI GTSAC 1 cut(s) 659
PagI TCATGA 1 cut(s) 739
PctI GAATGC 1 cut(s) 736
PdmI GAANNNNTTC 1 cut(s) 238
PflMI CCANNNNNTGG 1 cut(s) 784
PkrI GCNGC 8 cut(s) 6, 20, 23, 148, 205, 301, 395, 603
PleI GAGTC 1 cut(s) 141
PluTI GGCGCC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 141
Psp6I CCWGG 3 cut(s) 589, 777, 783
PspFI CCCAGC 1 cut(s) 568
PspGI CCWGG 3 cut(s) 589, 777, 783
PspN4I GGNNCC 2 cut(s) 126, 405
PspPI GGNCC 2 cut(s) 599, 781
PstI CTGCAG 1 cut(s) 9
PstNI CAGNNNCTG 1 cut(s) 784
PsuI RGATCY 1 cut(s) 403
PvuII CAGCTG 1 cut(s) 572
RsaI GTAC 3 cut(s) 140, 437, 725
RsaNI GTAC 3 cut(s) 139, 436, 724
SaqAI TTAA 2 cut(s) 477, 608
SatI GCNGC 8 cut(s) 5, 19, 22, 147, 204, 300, 394, 602
Sau3AI GATC 1 cut(s) 403
Sau96I GGNCC 2 cut(s) 599, 781
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 6 cut(s) 143, 252, 591, 665, 779, 785
SduI GDGCHC 1 cut(s) 765
SfaNI GCATC 3 cut(s) 49, 645, 697
SfcI CTRYAG 1 cut(s) 5
SfiI GGCCNNNNNGGCC 1 cut(s) 191
SfoI GGCGCC 1 cut(s) 126
SmlI CTYRAG 1 cut(s) 719
SmoI CTYRAG 1 cut(s) 719
Sse9I AATT 3 cut(s) 487, 633, 669
SsiI CCGC 8 cut(s) 18, 21, 107, 146, 203, 206, 602, 691
SspDI GGCGCC 1 cut(s) 124
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 6 cut(s) 141, 250, 589, 663, 777, 783
StyI CCWWGG 3 cut(s) 279, 290, 543
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 261
TasI AATT 3 cut(s) 487, 633, 669
TatI WGTACW 1 cut(s) 723
TauI GCSGC 5 cut(s) 21, 24, 149, 206, 604
Tru1I TTAA 2 cut(s) 477, 608
Tru9I TTAA 2 cut(s) 477, 608
TseFI GTSAC 1 cut(s) 659
TseI GCWGC 3 cut(s) 4, 299, 393
Tsp45I GTSAC 1 cut(s) 659
TspDTI ATGAA 2 cut(s) 436, 728
TspGWI ACGGA 1 cut(s) 126
Van91I CCANNNNNTGG 1 cut(s) 784
XagI CCTNNNNNAGG 1 cut(s) 594
XapI RAATTY 1 cut(s) 487
XmiI GTMKAC 1 cut(s) 325
XmnI GAANNNNTTC 1 cut(s) 238
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.