RchiOBHm_Chr4g0431891

Carboxylesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0016315
Physical Location & Seq
Forward (+)
56034094 .. 56036322
2229 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40053

Sequence Viewer

Length: 1194 bp
ATGATGCCAAGCCTAAGCTTGCAGCTGCAGAGCTTGTTCTTCAAGTACCACCTCCGCCACCAACTACAGACTCTAACCCAAACTCAAACCCAAGAAGAGACCCGCGACCAATTCGGCACCACTTCCCGACCCCACCACCCGTCCTTTCCCGCCAACCCGACTTTCCAAAACGGCGTCGCCACCAAGGACCTCCACATCGACCCCTTATCCTCTCTCTCCCTCCGCATCTTCCTCCCCGAAACAGTCCTCGCCAAAGACTCCACCTTCGGCTCCGACGGCGTTGTCTACGGCGGATACTCTCCCCCGATCGGAAAGCGCCACCGCAAGCTGCCGATCATGCTGCAGTTCCACGGCGGCGGCTTTGTCATCGGGAGCAACGGCACGGCGTGTAACGATGCGTTTTGCAGGAGGATGGCGAAGCTGTGCGACGTGATTGTGGTGGCGGTGGGTTATAGGCTGGCGCCGGAGAGTCCGTACCCGGCGGCGTTTGAGGATGGGATGTTGGTGTTGAACTGGCTGGCCAAGCAGGCCAACTTGGCGGCGGTGAGAAATCGCAATGGGAGGAAGGGAAATGGTTCTGGTCATCCGGGTATTTTCGATAGCTTTGGGTCGTCCATGGTTGAGCCTTGGTTGGCTGCTCATGGTGAACCTTCTAGGTGTATACTCCTCGGAGTGAGCTGTGGTGCTAACATAGCAGATTATGTAGCTCGGAAGGCTGTGGAAGCGAGCAGCCTCTTGGATCCTCTAAAAGTGGTGGCTCAAATCCTGATGTACCCTTTCTTCATTGGAAGCGTTCCCACCAAGTCCGAGATTAAGTTGGCAAATTCCTACTTTTATGACAAGGCTACTTGTATGATGGCATGGAAGCTATTTCTACCCAAGGAAGAGTTTTATTTAGACCACCCAGCTGGCAACCCTCTCGTTCCTGGGAGAGGGCCGCCCTTAAAGACCATGCCTCCCACACTTACAATTGTTGCAGAGCATGACTGGATGCGTGACCAGGGAATTGCTTACTCAGAAGCATTGCGGAAGGCTAATGTGGATGCACCTCTTCTTGAGTACAAGAATGCTGTTCATGAGTTTGCTACTCTTGATGTGCTCCTCCAGACACCCCAGGCCCTGGCTTGTGCTGATGATATCACAATATGGGTCAAGAAGTATATATCACTCAGAGGTGGTGAGTTTTCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

397

Amino Acids

43.76

Weight (kDa)

8.37

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 104 - 154 1.6e-07 Carboxylesterase family
BD-FAE PF20434 105 - 178 6.4e-06 BD-FAE
Abhydrolase_3 PF07859 113 - 362 1.3e-55 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016315)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24810
malus_domestica MD13G1108800.v1.1
prunus_persica Prupe.1G237400_v2.0.a1
pyrus_communis pycom13g09430
rosa_chinensis RchiOBHm_Chr4g0431891
rosa_laevigata RLG00000006878
rosa_multiflora Rmu_sc0004965.1_g000005 Rmu_sc0037399.1_g000002
rosa_roxburghii Rroxscaffold_5G00373320
rosa_rugosa Rorug04G0252800
rosa_samantha Rh4AG310000 Rh4BG317100 Rh4CG332400 Rh4DG312000
rosa_wichuraiana Rw4G026970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 281
AccB1I GGYRCC 2 cut(s) 116, 460
AccB7I CCANNNNNTGG 1 cut(s) 1120
AccI GTMKAC 2 cut(s) 285, 661
AccII CGCG 1 cut(s) 105
AclWI GGATC 2 cut(s) 734, 747
AcoI YGGCCR 1 cut(s) 519
AcsI RAATTY 1 cut(s) 823
AcyI GRCGYC 2 cut(s) 174, 461
AdeI CACNNNGTG 1 cut(s) 387
AfaI GTAC 4 cut(s) 47, 476, 773, 1061
AfiI CCNNNNNNNGG 3 cut(s) 308, 932, 1120
AgsI TTSAA 2 cut(s) 43, 511
AjiI CACGTC 1 cut(s) 430
AjnI CCWGG 4 cut(s) 925, 999, 1113, 1119
AjuI GAANNNNNNNTTGG 2 cut(s) 146, 178
Alw21I GWGCWC 1 cut(s) 1101
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 2 cut(s) 734, 747
AlwNI CAGNNNCTG 1 cut(s) 1120
AoxI GGCC 4 cut(s) 519, 528, 935, 1116
ApeKI GCWGC 6 cut(s) 22, 25, 328, 340, 635, 729
ApoI RAATTY 1 cut(s) 823
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
Asp700I GAANNNNTTC 1 cut(s) 574
AspLEI GCGC 2 cut(s) 318, 463
AspS9I GGNCC 3 cut(s) 187, 935, 1117
AsuC2I CCSGG 2 cut(s) 479, 588
AsuHPI GGTGA 3 cut(s) 556, 656, 1190
AvaII GGWCC 1 cut(s) 187
BalI TGGCCA 1 cut(s) 521
BamHI GGATCC 1 cut(s) 739
BanI GGYRCC 2 cut(s) 116, 460
BarI GAAGNNNNNNTAC 2 cut(s) 764, 796
Bbv12I GWGCWC 1 cut(s) 1101
BbvI GCAGC 6 cut(s) 12, 34, 315, 327, 622, 741
BccI CCATC 3 cut(s) 406, 488, 850
BceAI ACGGC 6 cut(s) 187, 292, 304, 367, 394, 399
BcgI CGANNNNNNTGC 4 cut(s) 322, 356, 901, 935
BciT130I CCWGG 4 cut(s) 927, 1001, 1115, 1121
BciVI GTATCC 1 cut(s) 287
BcnI CCSGG 2 cut(s) 479, 588
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 1 cut(s) 654
BfmI CTRYAG 3 cut(s) 26, 65, 341
BfoI RGCGCY 2 cut(s) 319, 464
BfuI GTATCC 1 cut(s) 287
BglI GCCNNNNNGGC 2 cut(s) 527, 536
Bme1390I CCNGG 6 cut(s) 479, 588, 927, 1001, 1115, 1121
Bme18I GGWCC 1 cut(s) 187
BmgBI CACGTC 1 cut(s) 430
BmgT120I GGNCC 3 cut(s) 187, 935, 1117
BmiI GGNNCC 4 cut(s) 118, 271, 462, 741
BmrFI CCNGG 6 cut(s) 479, 588, 927, 1001, 1115, 1121
BmsI GCATC 4 cut(s) 234, 385, 981, 1033
BpmI CTGGAG 1 cut(s) 1088
Bpu10I CCTNAGC 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 1076
BpuMI CCSGG 2 cut(s) 479, 588
BsaHI GRCGYC 2 cut(s) 174, 461
BsaI GGTCTC 1 cut(s) 92
BsaXI ACNNNNNCTCC 4 cut(s) 458, 488, 940, 970
Bsc4I CCNNNNNNNGG 3 cut(s) 308, 932, 1120
Bse1I ACTGG 2 cut(s) 518, 992
Bse3DI GCAATG 2 cut(s) 562, 1022
BseBI CCWGG 4 cut(s) 927, 1001, 1115, 1121
BseGI GGATG 6 cut(s) 417, 499, 504, 583, 996, 1048
BseLI CCNNNNNNNGG 3 cut(s) 308, 932, 1120
BseMI GCAATG 2 cut(s) 562, 1022
BseMII CTCAG 2 cut(s) 1029, 1183
BseNI ACTGG 2 cut(s) 518, 992
BseRI GAGGAG 2 cut(s) 656, 1091
BseXI GCAGC 6 cut(s) 12, 34, 315, 327, 622, 741
BseYI CCCAGC 1 cut(s) 904
Bsh1236I CGCG 1 cut(s) 105
Bsh1285I CGRYCG 1 cut(s) 309
BshFI GGCC 4 cut(s) 521, 530, 937, 1118
BshNI GGYRCC 2 cut(s) 116, 460
BsiEI CGRYCG 1 cut(s) 309
BsiHKAI GWGCWC 1 cut(s) 1101
BsiSI CCGG 3 cut(s) 464, 479, 587
BslI CCNNNNNNNGG 3 cut(s) 308, 932, 1120
BsmAI GTCTC 1 cut(s) 92
BsmI GAATGC 1 cut(s) 1072
BsnI GGCC 4 cut(s) 521, 530, 937, 1118
Bso31I GGTCTC 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 1101
Bsp143I GATC 3 cut(s) 306, 333, 739
Bsp19I CCATGG 1 cut(s) 615
BspANI GGCC 4 cut(s) 521, 530, 937, 1118
BspCNI CTCAG 2 cut(s) 1028, 1182
BspFNI CGCG 1 cut(s) 105
BspHI TCATGA 1 cut(s) 1075
BspLI GGNNCC 4 cut(s) 118, 271, 462, 741
BspMAI CTGCAG 2 cut(s) 30, 345
BspPI GGATC 2 cut(s) 734, 747
BspT107I GGYRCC 2 cut(s) 116, 460
BspTNI GGTCTC 1 cut(s) 92
BsrDI GCAATG 2 cut(s) 562, 1022
BsrI ACTGG 2 cut(s) 518, 992
BssMI GATC 3 cut(s) 306, 333, 739
BssNAI GTATAC 1 cut(s) 662
BssNI GRCGYC 2 cut(s) 174, 461
BssT1I CCWWGG 4 cut(s) 183, 615, 626, 879
Bst1107I GTATAC 1 cut(s) 662
Bst2UI CCWGG 4 cut(s) 927, 1001, 1115, 1121
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 3 cut(s) 90, 879, 1056
BstACI GRCGYC 2 cut(s) 174, 461
BstC8I GCNNGC 7 cut(s) 20, 326, 459, 519, 528, 727, 910
BstDEI CTNAG 3 cut(s) 14, 1015, 1169
BstDSI CCRYGG 2 cut(s) 349, 615
BstENI CCTNNNNNAGG 1 cut(s) 930
BstF5I GGATG 6 cut(s) 417, 499, 504, 583, 996, 1048
BstFNI CGCG 1 cut(s) 105
BstH2I RGCGCY 2 cut(s) 319, 464
BstHHI GCGC 2 cut(s) 318, 463
BstKTI GATC 3 cut(s) 309, 336, 742
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 3 cut(s) 306, 333, 739
BstMCI CGRYCG 1 cut(s) 309
BstMWI GCNNNNNNNGC 8 cut(s) 276, 337, 523, 527, 536, 692, 713, 722
BstNI CCWGG 4 cut(s) 927, 1001, 1115, 1121
BstSCI CCNGG 6 cut(s) 477, 586, 925, 999, 1113, 1119
BstSFI CTRYAG 3 cut(s) 26, 65, 341
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 6 cut(s) 12, 34, 315, 327, 622, 741
BstX2I RGATCY 1 cut(s) 739
BstXI CCANNNNNNTGG 1 cut(s) 908
BstYI RGATCY 1 cut(s) 739
BstZ17I GTATAC 1 cut(s) 662
BsuI GTATCC 1 cut(s) 287
BsuRI GGCC 4 cut(s) 521, 530, 937, 1118
BtgI CCRYGG 2 cut(s) 349, 615
BtrI CACGTC 1 cut(s) 430
BtsCI GGATG 6 cut(s) 417, 499, 504, 583, 996, 1048
Cac8I GCNNGC 7 cut(s) 20, 326, 459, 519, 528, 727, 910
CaiI CAGNNNCTG 1 cut(s) 1120
CciI TCATGA 1 cut(s) 1075
CfoI GCGC 2 cut(s) 318, 463
Cfr13I GGNCC 3 cut(s) 187, 935, 1117
CseI GACGC 1 cut(s) 163
Csp6I GTAC 4 cut(s) 46, 475, 772, 1060
CviAII CATG 7 cut(s) 337, 616, 641, 861, 952, 983, 1076
CviQI GTAC 4 cut(s) 46, 475, 772, 1060
DdeI CTNAG 3 cut(s) 14, 1015, 1169
DinI GGCGCC 1 cut(s) 462
DpnI GATC 3 cut(s) 308, 335, 741
DpnII GATC 3 cut(s) 306, 333, 739
DraIII CACNNNGTG 1 cut(s) 387
DrdI GACNNNNNNGTC 1 cut(s) 281
DseDI GACNNNNNNGTC 1 cut(s) 281
EaeI YGGCCR 1 cut(s) 519
Eam1104I CTCTTC 3 cut(s) 90, 879, 1056
EarI CTCTTC 3 cut(s) 90, 879, 1056
EciI GGCGGA 2 cut(s) 44, 306
Eco130I CCWWGG 4 cut(s) 183, 615, 626, 879
Eco31I GGTCTC 1 cut(s) 92
Eco32I GATATC 1 cut(s) 1138
Eco47I GGWCC 1 cut(s) 187
EcoNI CCTNNNNNAGG 1 cut(s) 930
EcoO109I RGGNCCY 2 cut(s) 187, 1117
EcoRII CCWGG 4 cut(s) 925, 999, 1113, 1119
EcoRV GATATC 1 cut(s) 1138
EcoT14I CCWWGG 4 cut(s) 183, 615, 626, 879
EgeI GGCGCC 1 cut(s) 462
EheI GGCGCC 1 cut(s) 462
ErhI CCWWGG 4 cut(s) 183, 615, 626, 879
FaeI CATG 7 cut(s) 340, 619, 644, 864, 955, 986, 1079
FatI CATG 7 cut(s) 336, 615, 640, 860, 951, 982, 1075
FauI CCCGC 2 cut(s) 110, 157
FblI GTMKAC 2 cut(s) 285, 661
FokI GGATG 6 cut(s) 424, 506, 511, 570, 1003, 1055
FspBI CTAG 1 cut(s) 654
GlaI GCGC 2 cut(s) 317, 462
GsaI CCCAGC 1 cut(s) 908
GsuI CTGGAG 1 cut(s) 1088
HaeII RGCGCY 2 cut(s) 319, 464
HaeIII GGCC 4 cut(s) 521, 530, 937, 1118
HapII CCGG 3 cut(s) 464, 479, 587
HgaI GACGC 1 cut(s) 163
HhaI GCGC 2 cut(s) 318, 463
Hin1I GRCGYC 2 cut(s) 174, 461
Hin1II CATG 7 cut(s) 340, 619, 644, 864, 955, 986, 1079
Hin6I GCGC 2 cut(s) 316, 461
HinP1I GCGC 2 cut(s) 316, 461
HindIII AAGCTT 1 cut(s) 16
HinfI GANTC 3 cut(s) 70, 257, 469
HpaII CCGG 3 cut(s) 464, 479, 587
HphI GGTGA 3 cut(s) 556, 656, 1190
Hpy166II GTNNAC 3 cut(s) 286, 647, 662
Hpy188I TCNGA 7 cut(s) 274, 311, 671, 711, 808, 1018, 1172
Hpy188III TCNNGA 8 cut(s) 126, 370, 766, 1055, 1076, 1091, 1105, 1153
Hpy8I GTNNAC 3 cut(s) 286, 647, 662
Hpy99I CGWCG 3 cut(s) 179, 278, 431
HpyAV CCTTC 5 cut(s) 274, 559, 660, 706, 1024
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 429
HpyCH4V TGCA 6 cut(s) 22, 28, 343, 405, 977, 1046
HpyF10VI GCNNNNNNNGC 8 cut(s) 276, 337, 523, 527, 536, 692, 713, 722
HpyF3I CTNAG 3 cut(s) 14, 1015, 1169
HpySE526I ACGT 1 cut(s) 429
Hsp92I GRCGYC 2 cut(s) 174, 461
Hsp92II CATG 7 cut(s) 340, 619, 644, 864, 955, 986, 1079
HspAI GCGC 2 cut(s) 316, 461
KasI GGCGCC 1 cut(s) 460
Kzo9I GATC 3 cut(s) 306, 333, 739
LmnI GCTCC 3 cut(s) 275, 372, 1104
Lsp1109I GCAGC 6 cut(s) 12, 34, 315, 327, 622, 741
LweI GCATC 4 cut(s) 234, 385, 981, 1033
MaeI CTAG 1 cut(s) 654
MaeII ACGT 1 cut(s) 429
MaeIII GTNAC 2 cut(s) 389, 995
MalI GATC 3 cut(s) 308, 335, 741
MboI GATC 3 cut(s) 306, 333, 739
MboII GAAGA 6 cut(s) 31, 107, 220, 772, 896, 1043
MfeI CAATTG 1 cut(s) 969
MflI RGATCY 1 cut(s) 739
MhlI GDGCHC 1 cut(s) 1101
MlsI TGGCCA 1 cut(s) 521
MluCI AATT 4 cut(s) 110, 823, 969, 1005
MluNI TGGCCA 1 cut(s) 521
Mly113I GGCGCC 1 cut(s) 461
MlyI GAGTC 3 cut(s) 64, 251, 478
MmeI TCCRAC 1 cut(s) 297
Mox20I TGGCCA 1 cut(s) 521
MroXI GAANNNNTTC 1 cut(s) 574
MscI TGGCCA 1 cut(s) 521
MseI TTAA 2 cut(s) 813, 944
Msp20I TGGCCA 1 cut(s) 521
MspA1I CMGCKG 2 cut(s) 25, 908
MspI CCGG 3 cut(s) 464, 479, 587
MspR9I CCNGG 6 cut(s) 479, 588, 927, 1001, 1115, 1121
MunI CAATTG 1 cut(s) 969
Mva1269I GAATGC 1 cut(s) 1072
MvaI CCWGG 4 cut(s) 927, 1001, 1115, 1121
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 8 cut(s) 276, 337, 523, 527, 536, 692, 713, 722
NarI GGCGCC 1 cut(s) 461
NciI CCSGG 2 cut(s) 479, 588
NcoI CCATGG 1 cut(s) 615
NdeII GATC 3 cut(s) 306, 333, 739
NlaIII CATG 7 cut(s) 340, 619, 644, 864, 955, 986, 1079
NlaIV GGNNCC 4 cut(s) 118, 271, 462, 741
NmuCI GTSAC 1 cut(s) 995
PagI TCATGA 1 cut(s) 1075
PctI GAATGC 1 cut(s) 1072
PdmI GAANNNNTTC 1 cut(s) 574
PflMI CCANNNNNTGG 1 cut(s) 1120
Ple19I CGATCG 1 cut(s) 309
PleI GAGTC 3 cut(s) 64, 251, 477
PluTI GGCGCC 1 cut(s) 464
PpsI GAGTC 3 cut(s) 64, 251, 477
PpuMI RGGWCCY 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 187
Psp6I CCWGG 4 cut(s) 925, 999, 1113, 1119
PspFI CCCAGC 1 cut(s) 904
PspGI CCWGG 4 cut(s) 925, 999, 1113, 1119
PspN4I GGNNCC 4 cut(s) 118, 271, 462, 741
PspPI GGNCC 3 cut(s) 187, 935, 1117
PspPPI RGGWCCY 1 cut(s) 187
PstI CTGCAG 2 cut(s) 30, 345
PstNI CAGNNNCTG 1 cut(s) 1120
PsuI RGATCY 1 cut(s) 739
PvuI CGATCG 1 cut(s) 309
PvuII CAGCTG 2 cut(s) 25, 908
RsaI GTAC 4 cut(s) 47, 476, 773, 1061
RsaNI GTAC 4 cut(s) 46, 475, 772, 1060
SaqAI TTAA 2 cut(s) 813, 944
Sau3AI GATC 3 cut(s) 306, 333, 739
Sau96I GGNCC 3 cut(s) 187, 935, 1117
SchI GAGTC 3 cut(s) 64, 251, 478
ScrFI CCNGG 6 cut(s) 479, 588, 927, 1001, 1115, 1121
SduI GDGCHC 1 cut(s) 1101
SfaNI GCATC 4 cut(s) 234, 385, 981, 1033
SfcI CTRYAG 3 cut(s) 26, 65, 341
SfiI GGCCNNNNNGGCC 1 cut(s) 527
SfoI GGCGCC 1 cut(s) 462
SinI GGWCC 1 cut(s) 187
SmlI CTYRAG 1 cut(s) 1055
SmoI CTYRAG 1 cut(s) 1055
Sse9I AATT 4 cut(s) 110, 823, 969, 1005
SspDI GGCGCC 1 cut(s) 460
SspMI CTAG 1 cut(s) 654
StyD4I CCNGG 6 cut(s) 477, 586, 925, 999, 1113, 1119
StyI CCWWGG 4 cut(s) 183, 615, 626, 879
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 1 cut(s) 432
TaqI TCGA 2 cut(s) 198, 597
TasI AATT 4 cut(s) 110, 823, 969, 1005
TatI WGTACW 1 cut(s) 1059
TauI GCSGC 5 cut(s) 357, 360, 485, 542, 940
Tru1I TTAA 2 cut(s) 813, 944
Tru9I TTAA 2 cut(s) 813, 944
TseFI GTSAC 1 cut(s) 995
TseI GCWGC 6 cut(s) 22, 25, 328, 340, 635, 729
Tsp45I GTSAC 1 cut(s) 995
TspDTI ATGAA 2 cut(s) 772, 1064
TspGWI ACGGA 1 cut(s) 462
Van91I CCANNNNNTGG 1 cut(s) 1120
VpaK11BI GGWCC 1 cut(s) 187
XagI CCTNNNNNAGG 1 cut(s) 930
XapI RAATTY 1 cut(s) 823
XmiI GTMKAC 2 cut(s) 285, 661
XmnI GAANNNNTTC 1 cut(s) 574
XspI CTAG 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.