RLG00000006878

Carboxylesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0016315
Physical Location & Seq
Reverse (-)
11385494 .. 11387297
1804 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006878

Sequence Viewer

Length: 1173 bp
ATGATGCCAAGACTAAGCTTGCAGCTGCAGAGCTTGTTCTTCAAGTACCACCTCCGCCACCAACTACAGACTCTAACCCAAACCCAAGAAGAGACCCGCGACCAATTCGGCACCACTTCCCGACCCGACCACCCGTCCGTTCCCGCCAACCCGACTTTCCAAAACGGCGTCGCCACCAAGGACCTCCACATCGACCCCTTCTCCTCTCTCTCCCTCCGCATCTTCCTCCCCGAAACAGTCCTCCCCAAAGACTCCACCTTTGGCTCCGACGGCGTCGTCTACGGCGGATACTCTCCCCCGATAGGAAAGCGCCACCGCAAGCTGCCGATTATGCTGCAGTTCCACGGTGGCGGCTTTGTCATCGGGAGCAACGGCACGGCGTGTAACGATGAGTTTTGCAGGAGGATGGCGAAGCTGTGCGACGTGATTGTGGTGGCGGTGGGTTATAGGCTGGCGCCGGAGAGTCCGTACCCGGCGGCGTTTGAGGATGGGATGTTGGTGTTGAACTGGCTGGCCAAGCAGGCCAACTTGGCGGCGGTGAGAAATCGCAATGGGAGGAAGGGAAATGGTTCTGGTATTTTCGATAGCTTTGGGTCGTCCATGGTTGAGCCTTGGTTGGCTGCTCATGGAGAACCTTCCAGGTGTATACTCCTCGGAGTGAGCTGTGGTGCTAACATAGCAGATTATGTAGCTCGGAAGGCTGTGGAAGCCCTCTTGGATCCTCTAAAAGTGGTGGCTCAAATCCTGATGTACCCTTTCTTCATTGGAAGCGTTCCCACCAAGTCCGAGATTAAGTTGGCAAATTCCTACTTTTATGACAAGGCTACTTGTATGATGGCATGGAAGCTATTTCTAACCAAGGAAGAGTTTTATTTAGACCACCCAGCTGGCAACCCTCTCATTCCTGGGAGAGGGCCGCCCTTAAAGACCATGCCTCCCACACTTACAATTGTTGCAGAGCATGATTGGATGCGTGACCGGGGAATTGCTTACTCAGAAGCATTGCGGAAGGCTAATGTGGATGCACCTCTTCTTGAGTACAAGAATGCTGTTCATGAGTTTGCTACTCTTGATGGGCTCCTCCAGACACCCCAGGCCCTGGCTTGTGCTGATGATATCACAATATGGGTCAAGAAGTATATATCACTCAGAGGTGGTGAGTTTTCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

391

Amino Acids

43.19

Weight (kDa)

8.36

Isoelectric Point (pI)

47.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 97 - 152 1.1e-07 Carboxylesterase family
BD-FAE PF20434 103 - 176 5.4e-06 BD-FAE
Abhydrolase_3 PF07859 111 - 355 7.5e-55 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016315)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24810
malus_domestica MD13G1108800.v1.1
prunus_persica Prupe.1G237400_v2.0.a1
pyrus_communis pycom13g09430
rosa_chinensis RchiOBHm_Chr4g0431891
rosa_laevigata RLG00000006878
rosa_multiflora Rmu_sc0004965.1_g000005 Rmu_sc0037399.1_g000002
rosa_roxburghii Rroxscaffold_5G00373320
rosa_rugosa Rorug04G0252800
rosa_samantha Rh4AG310000 Rh4BG317100 Rh4CG332400 Rh4DG312000
rosa_wichuraiana Rw4G026970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 275
AccB1I GGYRCC 2 cut(s) 110, 454
AccB7I CCANNNNNTGG 1 cut(s) 1099
AccI GTMKAC 2 cut(s) 279, 646
AccII CGCG 1 cut(s) 99
AclWI GGATC 2 cut(s) 713, 726
AcoI YGGCCR 1 cut(s) 513
AcsI RAATTY 1 cut(s) 802
AcyI GRCGYC 3 cut(s) 168, 273, 455
AdeI CACNNNGTG 1 cut(s) 381
AfaI GTAC 4 cut(s) 47, 470, 752, 1040
AfiI CCNNNNNNNGG 3 cut(s) 302, 911, 1099
AgsI TTSAA 2 cut(s) 43, 505
AhdI GACNNNNNGTC 1 cut(s) 133
AjiI CACGTC 1 cut(s) 424
AjnI CCWGG 4 cut(s) 638, 904, 1092, 1098
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 2 cut(s) 713, 726
AlwNI CAGNNNCTG 1 cut(s) 1099
AoxI GGCC 4 cut(s) 513, 522, 914, 1095
ApeKI GCWGC 5 cut(s) 22, 25, 322, 334, 620
ApoI RAATTY 1 cut(s) 802
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
Asp700I GAANNNNTTC 1 cut(s) 568
AspLEI GCGC 2 cut(s) 312, 457
AspS9I GGNCC 3 cut(s) 181, 914, 1096
AsuC2I CCSGG 2 cut(s) 473, 980
AsuHPI GGTGA 2 cut(s) 550, 1169
AvaII GGWCC 1 cut(s) 181
BalI TGGCCA 1 cut(s) 515
BamHI GGATCC 1 cut(s) 718
BanI GGYRCC 2 cut(s) 110, 454
BanII GRGCYC 1 cut(s) 1080
BarI GAAGNNNNNNTAC 2 cut(s) 743, 775
BbvI GCAGC 5 cut(s) 12, 34, 309, 321, 607
BccI CCATC 4 cut(s) 400, 482, 829, 1067
BceAI ACGGC 5 cut(s) 181, 286, 298, 388, 393
BcgI CGANNNNNNTGC 2 cut(s) 316, 350
BciT130I CCWGG 4 cut(s) 640, 906, 1094, 1100
BciVI GTATCC 1 cut(s) 281
BcnI CCSGG 2 cut(s) 473, 980
BcoDI GTCTC 1 cut(s) 86
BfmI CTRYAG 3 cut(s) 26, 65, 335
BfoI RGCGCY 2 cut(s) 313, 458
BfuI GTATCC 1 cut(s) 281
BglI GCCNNNNNGGC 2 cut(s) 521, 530
BisI GCNGC 9 cut(s) 23, 26, 323, 335, 352, 477, 534, 621, 917
BlsI GCNGC 9 cut(s) 24, 27, 324, 336, 353, 478, 535, 622, 918
Bme1390I CCNGG 6 cut(s) 473, 640, 906, 980, 1094, 1100
Bme18I GGWCC 1 cut(s) 181
BmeRI GACNNNNNGTC 1 cut(s) 133
BmgBI CACGTC 1 cut(s) 424
BmgT120I GGNCC 3 cut(s) 181, 914, 1096
BmiI GGNNCC 5 cut(s) 112, 265, 456, 720, 1079
BmrFI CCNGG 6 cut(s) 473, 640, 906, 980, 1094, 1100
BmsI GCATC 3 cut(s) 228, 960, 1012
BpmI CTGGAG 1 cut(s) 1067
BpuEI CTTGAG 1 cut(s) 1055
BpuMI CCSGG 2 cut(s) 473, 980
BsaHI GRCGYC 3 cut(s) 168, 273, 455
BsaI GGTCTC 1 cut(s) 86
BsaXI ACNNNNNCTCC 6 cut(s) 185, 215, 452, 482, 919, 949
Bsc4I CCNNNNNNNGG 3 cut(s) 302, 911, 1099
Bse1I ACTGG 1 cut(s) 512
Bse3DI GCAATG 2 cut(s) 556, 1001
BseBI CCWGG 4 cut(s) 640, 906, 1094, 1100
BseGI GGATG 5 cut(s) 411, 493, 498, 975, 1027
BseLI CCNNNNNNNGG 3 cut(s) 302, 911, 1099
BseMI GCAATG 2 cut(s) 556, 1001
BseMII CTCAG 2 cut(s) 1008, 1162
BseNI ACTGG 1 cut(s) 512
BseRI GAGGAG 3 cut(s) 193, 641, 1070
BseXI GCAGC 5 cut(s) 12, 34, 309, 321, 607
BseYI CCCAGC 1 cut(s) 883
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 4 cut(s) 515, 524, 916, 1097
BshNI GGYRCC 2 cut(s) 110, 454
BsiSI CCGG 3 cut(s) 458, 473, 979
BslI CCNNNNNNNGG 3 cut(s) 302, 911, 1099
BsmAI GTCTC 1 cut(s) 86
BsmI GAATGC 1 cut(s) 1051
BsnI GGCC 4 cut(s) 515, 524, 916, 1097
Bso31I GGTCTC 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 1080
Bsp143I GATC 1 cut(s) 718
Bsp19I CCATGG 1 cut(s) 600
BspANI GGCC 4 cut(s) 515, 524, 916, 1097
BspCNI CTCAG 2 cut(s) 1007, 1161
BspFNI CGCG 1 cut(s) 99
BspHI TCATGA 1 cut(s) 1054
BspLI GGNNCC 5 cut(s) 112, 265, 456, 720, 1079
BspMAI CTGCAG 2 cut(s) 30, 339
BspPI GGATC 2 cut(s) 713, 726
BspT107I GGYRCC 2 cut(s) 110, 454
BspTNI GGTCTC 1 cut(s) 86
BsrDI GCAATG 2 cut(s) 556, 1001
BsrI ACTGG 1 cut(s) 512
BssMI GATC 1 cut(s) 718
BssNAI GTATAC 1 cut(s) 647
BssNI GRCGYC 3 cut(s) 168, 273, 455
BssT1I CCWWGG 4 cut(s) 177, 600, 611, 858
Bst1107I GTATAC 1 cut(s) 647
Bst2UI CCWGG 4 cut(s) 640, 906, 1094, 1100
Bst4CI ACNGT 2 cut(s) 238, 347
Bst6I CTCTTC 3 cut(s) 84, 858, 1035
BstACI GRCGYC 3 cut(s) 168, 273, 455
BstC8I GCNNGC 6 cut(s) 20, 320, 453, 513, 522, 889
BstDEI CTNAG 3 cut(s) 14, 994, 1148
BstDSI CCRYGG 2 cut(s) 343, 600
BstENI CCTNNNNNAGG 1 cut(s) 909
BstF5I GGATG 5 cut(s) 411, 493, 498, 975, 1027
BstFNI CGCG 1 cut(s) 99
BstH2I RGCGCY 2 cut(s) 313, 458
BstHHI GCGC 2 cut(s) 312, 457
BstKTI GATC 1 cut(s) 721
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 1 cut(s) 718
BstMWI GCNNNNNNNGC 8 cut(s) 270, 331, 517, 521, 530, 677, 698, 707
BstNI CCWGG 4 cut(s) 640, 906, 1094, 1100
BstSCI CCNGG 6 cut(s) 471, 638, 904, 978, 1092, 1098
BstSFI CTRYAG 3 cut(s) 26, 65, 335
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 5 cut(s) 12, 34, 309, 321, 607
BstX2I RGATCY 1 cut(s) 718
BstXI CCANNNNNNTGG 1 cut(s) 887
BstYI RGATCY 1 cut(s) 718
BstZ17I GTATAC 1 cut(s) 647
BsuI GTATCC 1 cut(s) 281
BsuRI GGCC 4 cut(s) 515, 524, 916, 1097
BtgI CCRYGG 2 cut(s) 343, 600
BtrI CACGTC 1 cut(s) 424
BtsCI GGATG 5 cut(s) 411, 493, 498, 975, 1027
Cac8I GCNNGC 6 cut(s) 20, 320, 453, 513, 522, 889
CaiI CAGNNNCTG 1 cut(s) 1099
CciI TCATGA 1 cut(s) 1054
CfoI GCGC 2 cut(s) 312, 457
Cfr13I GGNCC 3 cut(s) 181, 914, 1096
CseI GACGC 2 cut(s) 157, 262
Csp6I GTAC 4 cut(s) 46, 469, 751, 1039
CviAII CATG 6 cut(s) 601, 626, 840, 931, 962, 1055
CviQI GTAC 4 cut(s) 46, 469, 751, 1039
DdeI CTNAG 3 cut(s) 14, 994, 1148
DinI GGCGCC 1 cut(s) 456
DpnI GATC 1 cut(s) 720
DpnII GATC 1 cut(s) 718
DraIII CACNNNGTG 1 cut(s) 381
DrdI GACNNNNNNGTC 1 cut(s) 275
DriI GACNNNNNGTC 1 cut(s) 133
DseDI GACNNNNNNGTC 1 cut(s) 275
EaeI YGGCCR 1 cut(s) 513
Eam1104I CTCTTC 3 cut(s) 84, 858, 1035
Eam1105I GACNNNNNGTC 1 cut(s) 133
EarI CTCTTC 3 cut(s) 84, 858, 1035
EciI GGCGGA 2 cut(s) 44, 300
Eco130I CCWWGG 4 cut(s) 177, 600, 611, 858
Eco24I GRGCYC 1 cut(s) 1080
Eco31I GGTCTC 1 cut(s) 86
Eco32I GATATC 1 cut(s) 1117
Eco47I GGWCC 1 cut(s) 181
EcoNI CCTNNNNNAGG 1 cut(s) 909
EcoO109I RGGNCCY 2 cut(s) 181, 1096
EcoRII CCWGG 4 cut(s) 638, 904, 1092, 1098
EcoRV GATATC 1 cut(s) 1117
EcoT14I CCWWGG 4 cut(s) 177, 600, 611, 858
EcoT38I GRGCYC 1 cut(s) 1080
EgeI GGCGCC 1 cut(s) 456
EheI GGCGCC 1 cut(s) 456
ErhI CCWWGG 4 cut(s) 177, 600, 611, 858
FaeI CATG 6 cut(s) 604, 629, 843, 934, 965, 1058
FatI CATG 6 cut(s) 600, 625, 839, 930, 961, 1054
FauI CCCGC 2 cut(s) 104, 151
FblI GTMKAC 2 cut(s) 279, 646
Fnu4HI GCNGC 9 cut(s) 23, 26, 323, 335, 352, 477, 534, 621, 917
FokI GGATG 5 cut(s) 418, 500, 505, 982, 1034
FriOI GRGCYC 1 cut(s) 1080
Fsp4HI GCNGC 9 cut(s) 23, 26, 323, 335, 352, 477, 534, 621, 917
GlaI GCGC 2 cut(s) 311, 456
GluI GCNGC 9 cut(s) 23, 26, 323, 335, 352, 477, 534, 621, 917
GsaI CCCAGC 1 cut(s) 887
GsuI CTGGAG 1 cut(s) 1067
HaeII RGCGCY 2 cut(s) 313, 458
HaeIII GGCC 4 cut(s) 515, 524, 916, 1097
HapII CCGG 3 cut(s) 458, 473, 979
HgaI GACGC 2 cut(s) 157, 262
HhaI GCGC 2 cut(s) 312, 457
Hin1I GRCGYC 3 cut(s) 168, 273, 455
Hin1II CATG 6 cut(s) 604, 629, 843, 934, 965, 1058
Hin6I GCGC 2 cut(s) 310, 455
HinP1I GCGC 2 cut(s) 310, 455
HindIII AAGCTT 1 cut(s) 16
HinfI GANTC 3 cut(s) 70, 251, 463
HpaII CCGG 3 cut(s) 458, 473, 979
HphI GGTGA 2 cut(s) 550, 1169
Hpy166II GTNNAC 2 cut(s) 280, 647
Hpy188I TCNGA 6 cut(s) 268, 656, 696, 787, 997, 1151
Hpy188III TCNNGA 8 cut(s) 120, 364, 745, 1034, 1055, 1070, 1084, 1132
Hpy8I GTNNAC 2 cut(s) 280, 647
Hpy99I CGWCG 4 cut(s) 173, 272, 278, 425
HpyAV CCTTC 5 cut(s) 208, 553, 645, 691, 1003
HpyCH4III ACNGT 2 cut(s) 238, 347
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 6 cut(s) 22, 28, 337, 399, 956, 1025
HpyF10VI GCNNNNNNNGC 8 cut(s) 270, 331, 517, 521, 530, 677, 698, 707
HpyF3I CTNAG 3 cut(s) 14, 994, 1148
HpySE526I ACGT 1 cut(s) 423
Hsp92I GRCGYC 3 cut(s) 168, 273, 455
Hsp92II CATG 6 cut(s) 604, 629, 843, 934, 965, 1058
HspAI GCGC 2 cut(s) 310, 455
KasI GGCGCC 1 cut(s) 454
Kzo9I GATC 1 cut(s) 718
LmnI GCTCC 3 cut(s) 269, 366, 1083
Lsp1109I GCAGC 5 cut(s) 12, 34, 309, 321, 607
LweI GCATC 3 cut(s) 228, 960, 1012
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 2 cut(s) 383, 974
MalI GATC 1 cut(s) 720
MboI GATC 1 cut(s) 718
MboII GAAGA 6 cut(s) 31, 101, 214, 751, 875, 1022
MfeI CAATTG 1 cut(s) 948
MflI RGATCY 1 cut(s) 718
MhlI GDGCHC 1 cut(s) 1080
MlsI TGGCCA 1 cut(s) 515
MluCI AATT 4 cut(s) 104, 802, 948, 984
MluNI TGGCCA 1 cut(s) 515
Mly113I GGCGCC 1 cut(s) 455
MlyI GAGTC 3 cut(s) 64, 245, 472
MmeI TCCRAC 1 cut(s) 291
Mox20I TGGCCA 1 cut(s) 515
MroXI GAANNNNTTC 1 cut(s) 568
MscI TGGCCA 1 cut(s) 515
MseI TTAA 2 cut(s) 792, 923
Msp20I TGGCCA 1 cut(s) 515
MspA1I CMGCKG 2 cut(s) 25, 887
MspI CCGG 3 cut(s) 458, 473, 979
MspR9I CCNGG 6 cut(s) 473, 640, 906, 980, 1094, 1100
MunI CAATTG 1 cut(s) 948
Mva1269I GAATGC 1 cut(s) 1051
MvaI CCWGG 4 cut(s) 640, 906, 1094, 1100
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 8 cut(s) 270, 331, 517, 521, 530, 677, 698, 707
NarI GGCGCC 1 cut(s) 455
NciI CCSGG 2 cut(s) 473, 980
NcoI CCATGG 1 cut(s) 600
NdeII GATC 1 cut(s) 718
NlaIII CATG 6 cut(s) 604, 629, 843, 934, 965, 1058
NlaIV GGNNCC 5 cut(s) 112, 265, 456, 720, 1079
NmuCI GTSAC 1 cut(s) 974
PagI TCATGA 1 cut(s) 1054
PctI GAATGC 1 cut(s) 1051
PdmI GAANNNNTTC 1 cut(s) 568
PflFI GACNNNGTC 1 cut(s) 272
PflMI CCANNNNNTGG 1 cut(s) 1099
PkrI GCNGC 9 cut(s) 24, 27, 324, 336, 353, 478, 535, 622, 918
PleI GAGTC 3 cut(s) 64, 245, 471
PluTI GGCGCC 1 cut(s) 458
PpsI GAGTC 3 cut(s) 64, 245, 471
PpuMI RGGWCCY 1 cut(s) 181
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 4 cut(s) 638, 904, 1092, 1098
PspFI CCCAGC 1 cut(s) 883
PspGI CCWGG 4 cut(s) 638, 904, 1092, 1098
PspN4I GGNNCC 5 cut(s) 112, 265, 456, 720, 1079
PspPI GGNCC 3 cut(s) 181, 914, 1096
PspPPI RGGWCCY 1 cut(s) 181
PstI CTGCAG 2 cut(s) 30, 339
PstNI CAGNNNCTG 1 cut(s) 1099
PsuI RGATCY 1 cut(s) 718
PsyI GACNNNGTC 1 cut(s) 272
PvuII CAGCTG 2 cut(s) 25, 887
RsaI GTAC 4 cut(s) 47, 470, 752, 1040
RsaNI GTAC 4 cut(s) 46, 469, 751, 1039
SaqAI TTAA 2 cut(s) 792, 923
SatI GCNGC 9 cut(s) 23, 26, 323, 335, 352, 477, 534, 621, 917
Sau3AI GATC 1 cut(s) 718
Sau96I GGNCC 3 cut(s) 181, 914, 1096
SchI GAGTC 3 cut(s) 64, 245, 472
ScrFI CCNGG 6 cut(s) 473, 640, 906, 980, 1094, 1100
SduI GDGCHC 1 cut(s) 1080
SfaNI GCATC 3 cut(s) 228, 960, 1012
SfcI CTRYAG 3 cut(s) 26, 65, 335
SfiI GGCCNNNNNGGCC 1 cut(s) 521
SfoI GGCGCC 1 cut(s) 456
SinI GGWCC 1 cut(s) 181
SmlI CTYRAG 1 cut(s) 1034
SmoI CTYRAG 1 cut(s) 1034
Sse9I AATT 4 cut(s) 104, 802, 948, 984
SspDI GGCGCC 1 cut(s) 454
StyD4I CCNGG 6 cut(s) 471, 638, 904, 978, 1092, 1098
StyI CCWWGG 4 cut(s) 177, 600, 611, 858
TaaI ACNGT 2 cut(s) 238, 347
TaiI ACGT 1 cut(s) 426
TaqI TCGA 2 cut(s) 192, 582
TasI AATT 4 cut(s) 104, 802, 948, 984
TatI WGTACW 1 cut(s) 1038
TauI GCSGC 4 cut(s) 354, 479, 536, 919
Tru1I TTAA 2 cut(s) 792, 923
Tru9I TTAA 2 cut(s) 792, 923
TseFI GTSAC 1 cut(s) 974
TseI GCWGC 5 cut(s) 22, 25, 322, 334, 620
Tsp45I GTSAC 1 cut(s) 974
TspDTI ATGAA 2 cut(s) 751, 1043
TspGWI ACGGA 2 cut(s) 127, 456
Tth111I GACNNNGTC 1 cut(s) 272
Van91I CCANNNNNTGG 1 cut(s) 1099
VpaK11BI GGWCC 1 cut(s) 181
XagI CCTNNNNNAGG 1 cut(s) 909
XapI RAATTY 1 cut(s) 802
XmiI GTMKAC 2 cut(s) 279, 646
XmnI GAANNNNTTC 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.