Rroxscaffold_5G00373320

Carboxylesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0016315
Physical Location & Seq
Forward (+)
54596616 .. 54598867
2252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00373320.1

Sequence Viewer

Length: 1197 bp
ATGATGCCGAGCCTAAGCTTGCAGCTGCAGAGCTTGTTCTTCAAGTACCACCTCCGCCACCAACTACAGACTCTAACCCAAACCCAAACCCAAGAAGAGACCCGCGACCAATTCGGCACCACTTCCCGACCCGACCACCCGTCCGTTCCCGCCAACCCGACTTTCCAAAACGGCGTCGCCACCAAGGACCTCCACATCGACCCCGTCTCCTCTCTCTCCCTCCGCATCTTCCTCCCCGAAACAGTCCTCTCCAAAGACTCCACCTTTGGCTCCGATGGCGTCGTCTACGGCGGATACTCTCCCCCGATCGGAAAGCGCCACCGCAAGCTGCCGATTATGCTGCAGTTCCACGGCGGCGGCTTTGTCATTGGGAGCAACGGCACGGCGTGTAACGATGCGTTTTGCAGGAGGATGGCGAAGCTGTGCGACGTGATTGTGGTGGCGGTGGGTTATAGGCTGGCGCCGGAGAGTCCGTACCCCGTGGCGTTTGAGGATGGGATGTTGGTGTTGAACTGGCTGGCAAAGCAGGCCAACTTGGCTGCGGTGAGAAATCGCAATGGGAGGAAGGAAATGGTTCTGGTATTTTTGATAGCTTTGGGTCGTCCATGGTTGAGCCTTGGTTGGCTGCTCATGGAGAACCTTCTAGATTATGTAGCTCGGAAGGCTGTGGAAGCGAGCAGCCTCTTGGATCCTCTAAAAGTGGTGGCTCAAATCCTGATGTACCCTTTCTTCATTGGAAGCGTTCCCACCAAGTCCGAGATTAAGTTGGCAAATTCCTACTTTTATGACAAGGCTACTTGTATGATGGCATGGAAGCTATTTCTACCCAAGGAAGAGTTTTATTTAGACCACCCAGCTGGCAACCCTCTCGTTCCTGGGAGAGGGCCGCTCTTAAAGACCATGCCTCCCACACTTACAATTGTTGCAGAGCATGATTGGATGCGTGACCGGGGAATTGCTTACTCAGAAGCATTGCGGAAGGCTAATGTGGATGCACCTCTTCTTGAGTACAAGAATGCTGTTCATGAGTTTGCTACTCTTGATGTGCTCCTCCAGACACCCCAGGCCCTGGCTTGTGCTGATGATATCACAATATGGGTCAAGAAATCAGTTCTGTTTCTTGCTCTGTCATCTTCATCAATTGTGCATTTGAATGCAGTGGTTCGTGAGCAGACCTTGCATCACATATTTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

398

Amino Acids

44.42

Weight (kDa)

8.67

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 99 - 154 1.4e-07 Carboxylesterase family
Abhydrolase_3 PF07859 113 - 181 4e-22 alpha/beta hydrolase fold
Abhydrolase_3 PF07859 216 - 345 8.9e-20 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016315)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24810
malus_domestica MD13G1108800.v1.1
prunus_persica Prupe.1G237400_v2.0.a1
pyrus_communis pycom13g09430
rosa_chinensis RchiOBHm_Chr4g0431891
rosa_laevigata RLG00000006878
rosa_multiflora Rmu_sc0004965.1_g000005 Rmu_sc0037399.1_g000002
rosa_roxburghii Rroxscaffold_5G00373320
rosa_rugosa Rorug04G0252800
rosa_samantha Rh4AG310000 Rh4BG317100 Rh4CG332400 Rh4DG312000
rosa_wichuraiana Rw4G026970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 116, 460
AccB7I CCANNNNNTGG 1 cut(s) 1069
AccBSI CCGCTC 1 cut(s) 889
AccI GTMKAC 1 cut(s) 285
AccII CGCG 1 cut(s) 105
AclWI GGATC 2 cut(s) 683, 696
AcsI RAATTY 1 cut(s) 772
AcyI GRCGYC 3 cut(s) 174, 279, 461
AdeI CACNNNGTG 1 cut(s) 387
AfaI GTAC 4 cut(s) 47, 476, 722, 1010
AfiI CCNNNNNNNGG 3 cut(s) 308, 881, 1069
AgsI TTSAA 3 cut(s) 43, 511, 1153
AhdI GACNNNNNGTC 1 cut(s) 139
AjiI CACGTC 1 cut(s) 430
AjnI CCWGG 3 cut(s) 874, 1062, 1068
AjuI GAANNNNNNNTTGG 2 cut(s) 146, 178
AluBI AGCT 9 cut(s) 18, 25, 33, 328, 421, 593, 656, 817, 857
AluI AGCT 9 cut(s) 18, 25, 33, 328, 421, 593, 656, 817, 857
Alw21I GWGCWC 1 cut(s) 1050
Alw26I GTCTC 2 cut(s) 92, 211
AlwI GGATC 2 cut(s) 683, 696
AlwNI CAGNNNCTG 1 cut(s) 1069
AoxI GGCC 3 cut(s) 528, 884, 1065
ApeKI GCWGC 7 cut(s) 22, 25, 328, 340, 539, 625, 678
ApoI RAATTY 1 cut(s) 772
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
Asp700I GAANNNNTTC 1 cut(s) 573
AspLEI GCGC 2 cut(s) 318, 463
AspS9I GGNCC 3 cut(s) 187, 884, 1066
AsuC2I CCSGG 1 cut(s) 950
AsuHPI GGTGA 1 cut(s) 556
AvaII GGWCC 1 cut(s) 187
BamHI GGATCC 1 cut(s) 688
BanI GGYRCC 2 cut(s) 116, 460
BarI GAAGNNNNNNTAC 2 cut(s) 713, 745
Bbv12I GWGCWC 1 cut(s) 1050
BbvI GCAGC 7 cut(s) 12, 34, 315, 327, 526, 612, 690
BccI CCATC 4 cut(s) 269, 406, 488, 799
BceAI ACGGC 5 cut(s) 187, 304, 367, 394, 399
BcgI CGANNNNNNTGC 4 cut(s) 322, 356, 850, 884
BciT130I CCWGG 3 cut(s) 876, 1064, 1070
BciVI GTATCC 1 cut(s) 287
BcnI CCSGG 1 cut(s) 950
BcoDI GTCTC 2 cut(s) 92, 211
BfaI CTAG 2 cut(s) 644, 1195
BfmI CTRYAG 3 cut(s) 26, 65, 341
BfoI RGCGCY 2 cut(s) 319, 464
BfuI GTATCC 1 cut(s) 287
BglI GCCNNNNNGGC 1 cut(s) 536
Bme1390I CCNGG 4 cut(s) 876, 950, 1064, 1070
Bme18I GGWCC 1 cut(s) 187
BmeRI GACNNNNNGTC 1 cut(s) 139
BmgBI CACGTC 1 cut(s) 430
BmgT120I GGNCC 3 cut(s) 187, 884, 1066
BmiI GGNNCC 4 cut(s) 118, 271, 462, 690
BmrFI CCNGG 4 cut(s) 876, 950, 1064, 1070
BmsI GCATC 5 cut(s) 234, 385, 930, 982, 1189
BplI GAGNNNNNCTC 2 cut(s) 873, 905
BpmI CTGGAG 1 cut(s) 1037
Bpu10I CCTNAGC 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 1025
BpuMI CCSGG 1 cut(s) 950
BsaHI GRCGYC 3 cut(s) 174, 279, 461
BsaI GGTCTC 1 cut(s) 92
BsaXI ACNNNNNCTCC 6 cut(s) 191, 221, 458, 488, 889, 919
Bsc4I CCNNNNNNNGG 3 cut(s) 308, 881, 1069
Bse1I ACTGG 1 cut(s) 518
Bse3DI GCAATG 2 cut(s) 562, 971
BseBI CCWGG 3 cut(s) 876, 1064, 1070
BseGI GGATG 5 cut(s) 417, 499, 504, 945, 997
BseLI CCNNNNNNNGG 3 cut(s) 308, 881, 1069
BseMI GCAATG 2 cut(s) 562, 971
BseMII CTCAG 1 cut(s) 978
BseNI ACTGG 1 cut(s) 518
BseRI GAGGAG 2 cut(s) 199, 1040
BseXI GCAGC 7 cut(s) 12, 34, 315, 327, 526, 612, 690
BseYI CCCAGC 1 cut(s) 853
Bsh1236I CGCG 1 cut(s) 105
Bsh1285I CGRYCG 1 cut(s) 309
BshFI GGCC 3 cut(s) 530, 886, 1067
BshNI GGYRCC 2 cut(s) 116, 460
BsiEI CGRYCG 1 cut(s) 309
BsiHKAI GWGCWC 1 cut(s) 1050
BsiSI CCGG 2 cut(s) 464, 949
BslI CCNNNNNNNGG 3 cut(s) 308, 881, 1069
BsmAI GTCTC 2 cut(s) 92, 211
BsmBI CGTCTC 1 cut(s) 211
BsmI GAATGC 2 cut(s) 1021, 1159
BsnI GGCC 3 cut(s) 530, 886, 1067
Bso31I GGTCTC 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 1050
Bsp143I GATC 2 cut(s) 306, 688
Bsp19I CCATGG 1 cut(s) 605
BspANI GGCC 3 cut(s) 530, 886, 1067
BspCNI CTCAG 1 cut(s) 977
BspFNI CGCG 1 cut(s) 105
BspHI TCATGA 1 cut(s) 1024
BspLI GGNNCC 4 cut(s) 118, 271, 462, 690
BspMAI CTGCAG 2 cut(s) 30, 345
BspPI GGATC 2 cut(s) 683, 696
BspT107I GGYRCC 2 cut(s) 116, 460
BspTNI GGTCTC 1 cut(s) 92
BsrBI CCGCTC 1 cut(s) 889
BsrDI GCAATG 2 cut(s) 562, 971
BsrI ACTGG 1 cut(s) 518
BssMI GATC 2 cut(s) 306, 688
BssNI GRCGYC 3 cut(s) 174, 279, 461
BssT1I CCWWGG 4 cut(s) 183, 605, 616, 828
Bst2UI CCWGG 3 cut(s) 876, 1064, 1070
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 3 cut(s) 90, 828, 1005
BstACI GRCGYC 3 cut(s) 174, 279, 461
BstAPI GCANNNNNTGC 1 cut(s) 1177
BstC8I GCNNGC 7 cut(s) 20, 326, 459, 519, 528, 676, 859
BstDEI CTNAG 2 cut(s) 14, 964
BstDSI CCRYGG 3 cut(s) 349, 480, 605
BstENI CCTNNNNNAGG 1 cut(s) 879
BstF5I GGATG 5 cut(s) 417, 499, 504, 945, 997
BstFNI CGCG 1 cut(s) 105
BstH2I RGCGCY 2 cut(s) 319, 464
BstHHI GCGC 2 cut(s) 318, 463
BstKTI GATC 2 cut(s) 309, 691
BstMAI GTCTC 2 cut(s) 92, 211
BstMBI GATC 2 cut(s) 306, 688
BstMCI CGRYCG 1 cut(s) 309
BstMWI GCNNNNNNNGC 8 cut(s) 276, 337, 523, 527, 536, 662, 671, 1177
BstNI CCWGG 3 cut(s) 876, 1064, 1070
BstSCI CCNGG 4 cut(s) 874, 948, 1062, 1068
BstSFI CTRYAG 3 cut(s) 26, 65, 341
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 7 cut(s) 12, 34, 315, 327, 526, 612, 690
BstX2I RGATCY 1 cut(s) 688
BstXI CCANNNNNNTGG 1 cut(s) 857
BstYI RGATCY 1 cut(s) 688
BsuI GTATCC 1 cut(s) 287
BsuRI GGCC 3 cut(s) 530, 886, 1067
BtgI CCRYGG 3 cut(s) 349, 480, 605
BtrI CACGTC 1 cut(s) 430
BtsCI GGATG 5 cut(s) 417, 499, 504, 945, 997
BtsI GCAGTG 1 cut(s) 1164
BtsIMutI CAGTG 1 cut(s) 1164
Cac8I GCNNGC 7 cut(s) 20, 326, 459, 519, 528, 676, 859
CaiI CAGNNNCTG 1 cut(s) 1069
CciI TCATGA 1 cut(s) 1024
CfoI GCGC 2 cut(s) 318, 463
Cfr13I GGNCC 3 cut(s) 187, 884, 1066
CseI GACGC 2 cut(s) 163, 268
Csp6I GTAC 4 cut(s) 46, 475, 721, 1009
CviAII CATG 6 cut(s) 606, 631, 810, 901, 932, 1025
CviQI GTAC 4 cut(s) 46, 475, 721, 1009
DdeI CTNAG 2 cut(s) 14, 964
DinI GGCGCC 1 cut(s) 462
DpnI GATC 2 cut(s) 308, 690
DpnII GATC 2 cut(s) 306, 688
DraIII CACNNNGTG 1 cut(s) 387
DriI GACNNNNNGTC 1 cut(s) 139
Eam1104I CTCTTC 3 cut(s) 90, 828, 1005
Eam1105I GACNNNNNGTC 1 cut(s) 139
EarI CTCTTC 3 cut(s) 90, 828, 1005
EciI GGCGGA 2 cut(s) 44, 306
Eco130I CCWWGG 4 cut(s) 183, 605, 616, 828
Eco31I GGTCTC 1 cut(s) 92
Eco32I GATATC 1 cut(s) 1087
Eco47I GGWCC 1 cut(s) 187
EcoNI CCTNNNNNAGG 1 cut(s) 879
EcoO109I RGGNCCY 2 cut(s) 187, 1066
EcoRII CCWGG 3 cut(s) 874, 1062, 1068
EcoRV GATATC 1 cut(s) 1087
EcoT14I CCWWGG 4 cut(s) 183, 605, 616, 828
EgeI GGCGCC 1 cut(s) 462
EheI GGCGCC 1 cut(s) 462
ErhI CCWWGG 4 cut(s) 183, 605, 616, 828
Esp3I CGTCTC 1 cut(s) 211
FaeI CATG 6 cut(s) 609, 634, 813, 904, 935, 1028
FatI CATG 6 cut(s) 605, 630, 809, 900, 931, 1024
FauI CCCGC 2 cut(s) 110, 157
FblI GTMKAC 1 cut(s) 285
FokI GGATG 5 cut(s) 424, 506, 511, 952, 1004
FspBI CTAG 2 cut(s) 644, 1195
GlaI GCGC 2 cut(s) 317, 462
GsaI CCCAGC 1 cut(s) 857
GsuI CTGGAG 1 cut(s) 1037
HaeII RGCGCY 2 cut(s) 319, 464
HaeIII GGCC 3 cut(s) 530, 886, 1067
HapII CCGG 2 cut(s) 464, 949
HgaI GACGC 2 cut(s) 163, 268
HhaI GCGC 2 cut(s) 318, 463
Hin1I GRCGYC 3 cut(s) 174, 279, 461
Hin1II CATG 6 cut(s) 609, 634, 813, 904, 935, 1028
Hin6I GCGC 2 cut(s) 316, 461
HinP1I GCGC 2 cut(s) 316, 461
HindIII AAGCTT 1 cut(s) 16
HinfI GANTC 3 cut(s) 70, 257, 469
HpaII CCGG 2 cut(s) 464, 949
HphI GGTGA 1 cut(s) 556
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 5 cut(s) 274, 311, 660, 757, 967
Hpy188III TCNNGA 9 cut(s) 126, 644, 715, 1004, 1025, 1040, 1054, 1102, 1166
Hpy8I GTNNAC 1 cut(s) 286
Hpy99I CGWCG 3 cut(s) 179, 284, 431
HpyAV CCTTC 4 cut(s) 559, 650, 655, 973
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 429
HpyCH4V TGCA 9 cut(s) 22, 28, 343, 405, 926, 995, 1147, 1157, 1180
HpyF10VI GCNNNNNNNGC 8 cut(s) 276, 337, 523, 527, 536, 662, 671, 1177
HpyF3I CTNAG 2 cut(s) 14, 964
HpySE526I ACGT 1 cut(s) 429
Hsp92I GRCGYC 3 cut(s) 174, 279, 461
Hsp92II CATG 6 cut(s) 609, 634, 813, 904, 935, 1028
HspAI GCGC 2 cut(s) 316, 461
KasI GGCGCC 1 cut(s) 460
Kzo9I GATC 2 cut(s) 306, 688
LmnI GCTCC 3 cut(s) 275, 372, 1053
Lsp1109I GCAGC 7 cut(s) 12, 34, 315, 327, 526, 612, 690
LweI GCATC 5 cut(s) 234, 385, 930, 982, 1189
MaeI CTAG 2 cut(s) 644, 1195
MaeII ACGT 1 cut(s) 429
MaeIII GTNAC 2 cut(s) 389, 944
MalI GATC 2 cut(s) 308, 690
MbiI CCGCTC 1 cut(s) 889
MboI GATC 2 cut(s) 306, 688
MboII GAAGA 7 cut(s) 31, 107, 220, 721, 845, 992, 1125
MfeI CAATTG 2 cut(s) 918, 1140
MflI RGATCY 1 cut(s) 688
MhlI GDGCHC 1 cut(s) 1050
MluCI AATT 5 cut(s) 110, 772, 918, 954, 1140
Mly113I GGCGCC 1 cut(s) 461
MlyI GAGTC 3 cut(s) 64, 251, 478
MroXI GAANNNNTTC 1 cut(s) 573
MseI TTAA 2 cut(s) 762, 893
MslI CAYNNNNRTG 1 cut(s) 1152
MspA1I CMGCKG 2 cut(s) 25, 857
MspI CCGG 2 cut(s) 464, 949
MspR9I CCNGG 4 cut(s) 876, 950, 1064, 1070
MunI CAATTG 2 cut(s) 918, 1140
Mva1269I GAATGC 2 cut(s) 1021, 1159
MvaI CCWGG 3 cut(s) 876, 1064, 1070
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 8 cut(s) 276, 337, 523, 527, 536, 662, 671, 1177
NarI GGCGCC 1 cut(s) 461
NciI CCSGG 1 cut(s) 950
NcoI CCATGG 1 cut(s) 605
NdeII GATC 2 cut(s) 306, 688
NlaIII CATG 6 cut(s) 609, 634, 813, 904, 935, 1028
NlaIV GGNNCC 4 cut(s) 118, 271, 462, 690
NmeAIII GCCGAG 1 cut(s) 33
NmuCI GTSAC 1 cut(s) 944
PagI TCATGA 1 cut(s) 1024
PctI GAATGC 2 cut(s) 1021, 1159
PdmI GAANNNNTTC 1 cut(s) 573
PflFI GACNNNGTC 1 cut(s) 203
PflMI CCANNNNNTGG 1 cut(s) 1069
Ple19I CGATCG 1 cut(s) 309
PleI GAGTC 3 cut(s) 64, 251, 477
PluTI GGCGCC 1 cut(s) 464
PpsI GAGTC 3 cut(s) 64, 251, 477
PpuMI RGGWCCY 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 187
Psp6I CCWGG 3 cut(s) 874, 1062, 1068
PspFI CCCAGC 1 cut(s) 853
PspGI CCWGG 3 cut(s) 874, 1062, 1068
PspN4I GGNNCC 4 cut(s) 118, 271, 462, 690
PspPI GGNCC 3 cut(s) 187, 884, 1066
PspPPI RGGWCCY 1 cut(s) 187
PstI CTGCAG 2 cut(s) 30, 345
PstNI CAGNNNCTG 1 cut(s) 1069
PsuI RGATCY 1 cut(s) 688
PsyI GACNNNGTC 1 cut(s) 203
PvuI CGATCG 1 cut(s) 309
PvuII CAGCTG 2 cut(s) 25, 857
RsaI GTAC 4 cut(s) 47, 476, 722, 1010
RsaNI GTAC 4 cut(s) 46, 475, 721, 1009
RseI CAYNNNNRTG 1 cut(s) 1152
SaqAI TTAA 2 cut(s) 762, 893
Sau3AI GATC 2 cut(s) 306, 688
Sau96I GGNCC 3 cut(s) 187, 884, 1066
SchI GAGTC 3 cut(s) 64, 251, 478
ScrFI CCNGG 4 cut(s) 876, 950, 1064, 1070
SduI GDGCHC 1 cut(s) 1050
SfaNI GCATC 5 cut(s) 234, 385, 930, 982, 1189
SfcI CTRYAG 3 cut(s) 26, 65, 341
SfoI GGCGCC 1 cut(s) 462
SinI GGWCC 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 1152
SmlI CTYRAG 1 cut(s) 1004
SmoI CTYRAG 1 cut(s) 1004
Sse9I AATT 5 cut(s) 110, 772, 918, 954, 1140
SspDI GGCGCC 1 cut(s) 460
SspMI CTAG 2 cut(s) 644, 1195
StyD4I CCNGG 4 cut(s) 874, 948, 1062, 1068
StyI CCWWGG 4 cut(s) 183, 605, 616, 828
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 1 cut(s) 432
TaqI TCGA 1 cut(s) 198
TasI AATT 5 cut(s) 110, 772, 918, 954, 1140
TatI WGTACW 1 cut(s) 1008
TauI GCSGC 3 cut(s) 357, 360, 889
Tru1I TTAA 2 cut(s) 762, 893
Tru9I TTAA 2 cut(s) 762, 893
TscAI CASTG 1 cut(s) 1164
TseFI GTSAC 1 cut(s) 944
TseI GCWGC 7 cut(s) 22, 25, 328, 340, 539, 625, 678
Tsp45I GTSAC 1 cut(s) 944
TspDTI ATGAA 3 cut(s) 721, 1013, 1125
TspGWI ACGGA 2 cut(s) 133, 462
TspRI CASTG 1 cut(s) 1164
Tth111I GACNNNGTC 1 cut(s) 203
Van91I CCANNNNNTGG 1 cut(s) 1069
VpaK11BI GGWCC 1 cut(s) 187
XagI CCTNNNNNAGG 1 cut(s) 879
XapI RAATTY 1 cut(s) 772
XbaI TCTAGA 1 cut(s) 643
XmiI GTMKAC 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 573
XspI CTAG 2 cut(s) 644, 1195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.