Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004783

Physical Location & Seq

Genomic Coordinates Forward (+)

27221218 .. 27222191

Gene Structure 974 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g25460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGGGCTTTCTGGCGACCTAGGCTTGGATTCCGACCCCCAGAAATGGGTCATGGCCGGAATACAGTTACGAGCTCCGTTAAAGCCGATATACACCAACGCGGTGGCGGAGATCAATGAAGGAAACGATGACGTGGGAGAAGAAGAGTGTGGTTCGACGACTCCGACGGCTGTGGAAGCGAGAATTCCGACGAGGATGACGTGTCCGCCTCCACCGAGGAAGAGGAAGTCTGTGGCTTCGAAATGTAACTATGTTAGAGAGTTCTTCACTCCTCCTGACTTGGAAAGCGTCTTCATACGTCGTCATGTCGAGAGCGCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

11.77

Weight (kDa)

5.38

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40460
fragaria_vesca	FvH4_4g25460 FvH4_6g51230
malus_domestica	MD09G1027300.v1.1 MD13G1102700.v1.1 MD16G1102900.v1.1 MD17G1027200.v1.1
prunus_persica	Prupe.1G243100_v2.0.a1 Prupe.3G291500_v2.0.a1
pyrus_communis	pycom13g08980
rosa_chinensis	RchiOBHm_Chr2g0172811 RchiOBHm_Chr4g0432781
rosa_laevigata	RLG00000006812 RLG00000022135
rosa_multiflora	Rmu_sc0002979.1_g000010 Rmu_sc0012180.1_g000003 Rmu_sc0027475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079490 Rroxscaffold_5G00374230
rosa_rugosa	Rorug02G0561900 Rorug04G0262800
rosa_samantha	Rh2AG639600 Rh2BG653000 Rh2CG618800 Rh2DG666700 Rh4AG316900 Rh4BG325200 Rh4CG340100 Rh4DG320300
rosa_wichuraiana	Rw2G052800 Rw4G027570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	101
AciI	CCGC	3 cut(s)	101, 107, 206
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	183
AfeI	AGCGCT	1 cut(s)	316
AfiI	CCNNNNNNNGG	3 cut(s)	25, 45, 46
AflIII	ACRYGT	1 cut(s)	200
AjiI	CACGTC	2 cut(s)	133, 201
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
Alw21I	GWGCWC	1 cut(s)	76
Aor51HI	AGCGCT	1 cut(s)	316
AoxI	GGCC	1 cut(s)	54
ApoI	RAATTY	1 cut(s)	183
AspA2I	CCTAGG	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	317
AsuII	TTCGAA	1 cut(s)	239
AvrII	CCTAGG	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	76
BceAI	ACGGC	1 cut(s)	183
BfaI	CTAG	1 cut(s)	20
BfoI	RGCGCY	1 cut(s)	318
BlnI	CCTAGG	1 cut(s)	19
BmgBI	CACGTC	2 cut(s)	133, 201
BpiI	GAAGAC	1 cut(s)	283
Bpu14I	TTCGAA	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	19, 215
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 45, 46
BseDI	CCNNGG	2 cut(s)	19, 215
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	3 cut(s)	25, 45, 46
BseRI	GAGGAG	1 cut(s)	261
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	57
BslI	CCNNNNNNNGG	3 cut(s)	25, 45, 46
BsnI	GGCC	1 cut(s)	56
Bsp119I	TTCGAA	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	3 cut(s)	101, 107, 206
BspANI	GGCC	1 cut(s)	56
BspFNI	CGCG	1 cut(s)	101
BspT104I	TTCGAA	1 cut(s)	239
BssECI	CCNNGG	2 cut(s)	19, 215
BssMI	GATC	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	19
Bst4CI	ACNGT	1 cut(s)	66
Bst6I	CTCTTC	2 cut(s)	138, 215
BstBI	TTCGAA	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	201
BstFNI	CGCG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	317
BstKTI	GATC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 176
BstUI	CGCG	1 cut(s)	101
BstV2I	GAAGAC	1 cut(s)	283
BstXI	CCANNNNNNTGG	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	56
BtrI	CACGTC	2 cut(s)	133, 201
BtsCI	GGATG	1 cut(s)	201
CfoI	GCGC	1 cut(s)	317
CseI	GACGC	1 cut(s)	277
CviAII	CATG	2 cut(s)	52, 305
CviJI	RGCY	7 cut(s)	7, 24, 56, 74, 85, 170, 236
CviKI_1	RGCY	7 cut(s)	7, 24, 56, 74, 85, 170, 236
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	2 cut(s)	138, 215
EarI	CTCTTC	2 cut(s)	138, 215
EciI	GGCGGA	2 cut(s)	122, 195
Ecl136II	GAGCTC	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	76
Eco47III	AGCGCT	1 cut(s)	316
Eco53kI	GAGCTC	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	74
EcoRI	GAATTC	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	19
FaeI	CATG	2 cut(s)	55, 308
FaiI	YATR	5 cut(s)	53, 91, 252, 296, 306
FatI	CATG	2 cut(s)	51, 304
FokI	GGATG	1 cut(s)	208
FriOI	GRGCYC	1 cut(s)	76
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	1 cut(s)	316
HaeII	RGCGCY	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	1 cut(s)	57
HgaI	GACGC	1 cut(s)	277
HhaI	GCGC	1 cut(s)	317
Hin1II	CATG	2 cut(s)	55, 308
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HinfI	GANTC	2 cut(s)	29, 160
HpaII	CCGG	1 cut(s)	57
Hpy188I	TCNGA	3 cut(s)	34, 165, 189
Hpy188III	TCNNGA	2 cut(s)	275, 310
Hpy99I	CGWCG	4 cut(s)	160, 169, 193, 303
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	1 cut(s)	66
HpyCH4IV	ACGT	3 cut(s)	132, 200, 298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 176
HpySE526I	ACGT	3 cut(s)	132, 200, 298
Hsp92II	CATG	2 cut(s)	55, 308
HspAI	GCGC	1 cut(s)	315
Kzo9I	GATC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	3 cut(s)	53, 70, 288
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	3 cut(s)	132, 200, 298
MaeIII	GTNAC	2 cut(s)	66, 245
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	5 cut(s)	152, 155, 232, 256, 283
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	2 cut(s)	183, 319
MlyI	GAGTC	1 cut(s)	154
MmeI	TCCRAC	3 cut(s)	57, 188, 212
MnlI	CCTC	5 cut(s)	186, 210, 216, 219, 282
MseI	TTAA	1 cut(s)	80
MspI	CCGG	1 cut(s)	57
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	21, 176
NdeII	GATC	1 cut(s)	111
NlaIII	CATG	2 cut(s)	55, 308
NspV	TTCGAA	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	2 cut(s)	161, 197
PfeI	GAWTC	1 cut(s)	29
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
Psp124BI	GAGCTC	1 cut(s)	76
SacI	GAGCTC	1 cut(s)	76
SaqAI	TTAA	1 cut(s)	80
Sau3AI	GATC	1 cut(s)	111
SchI	GAGTC	1 cut(s)	154
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	5 cut(s)	21, 76, 135, 203, 301
SfuI	TTCGAA	1 cut(s)	239
Sse9I	AATT	2 cut(s)	183, 319
SsiI	CCGC	3 cut(s)	101, 107, 206
SspMI	CTAG	1 cut(s)	20
SstI	GAGCTC	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	1 cut(s)	66
TaiI	ACGT	3 cut(s)	135, 203, 301
TaqI	TCGA	3 cut(s)	155, 239, 309
TasI	AATT	2 cut(s)	183, 319
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TspDTI	ATGAA	2 cut(s)	132, 283
TspGWI	ACGGA	1 cut(s)	66
XapI	RAATTY	1 cut(s)	183
XmaJI	CCTAGG	1 cut(s)	19
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.