Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004783

Physical Location & Seq

Genomic Coordinates Reverse (-)

1697894 .. 1698226

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1027300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGGTTTTTCGAAGAAGTCCCAGGTCGCGGAAGGAGGCATGGAATCCGAAGGGAAGAAGTGGGTAATCGCCGGAATCTCAGTCCGGACTTGCTTGAAGCCAGTGAACACGAAACCGGCGAGGGGGAAAGAGAGCGACGACGGAGAAGAAGAGGAGGCGTATTCGACAACCCCAACAACGAAAGAAACAAGAATACCAGAGATTTTTTCGTGCCCGCCGGCGCCGAGGAAGAGCCGGCCTCCTTCCAGATGCAACTTCAATGGCGTGAAGGAGTTTTTTACTCCGCCGGATTTGGAAACGGTGTTCAAGCTCCATGTTGAGAAAGCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

12.17

Weight (kDa)

8.46

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40460
fragaria_vesca	FvH4_4g25460 FvH4_6g51230
malus_domestica	MD09G1027300.v1.1 MD13G1102700.v1.1 MD16G1102900.v1.1 MD17G1027200.v1.1
prunus_persica	Prupe.1G243100_v2.0.a1 Prupe.3G291500_v2.0.a1
pyrus_communis	pycom13g08980
rosa_chinensis	RchiOBHm_Chr2g0172811 RchiOBHm_Chr4g0432781
rosa_laevigata	RLG00000006812 RLG00000022135
rosa_multiflora	Rmu_sc0002979.1_g000010 Rmu_sc0012180.1_g000003 Rmu_sc0027475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079490 Rroxscaffold_5G00374230
rosa_rugosa	Rorug02G0561900 Rorug04G0262800
rosa_samantha	Rh2AG639600 Rh2BG653000 Rh2CG618800 Rh2DG666700 Rh4AG316900 Rh4BG325200 Rh4CG340100 Rh4DG320300
rosa_wichuraiana	Rw2G052800 Rw4G027570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	220
AccII	CGCG	1 cut(s)	29
AccIII	TCCGGA	1 cut(s)	84
AciI	CCGC	3 cut(s)	29, 215, 284
AcyI	GRCGYC	1 cut(s)	221
AfiI	CCNNNNNNNGG	2 cut(s)	28, 122
AgsI	TTSAA	3 cut(s)	97, 259, 307
AjnI	CCWGG	1 cut(s)	21
AloI	GAACNNNNNNTCC	2 cut(s)	287, 319
AluBI	AGCT	1 cut(s)	310
AluI	AGCT	1 cut(s)	310
Aor13HI	TCCGGA	1 cut(s)	84
AoxI	GGCC	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	223
AsuII	TTCGAA	1 cut(s)	11
BaeGI	GKGCMC	1 cut(s)	215
BanI	GGYRCC	1 cut(s)	220
BciT130I	CCWGG	1 cut(s)	23
BfoI	RGCGCY	1 cut(s)	224
Bme1390I	CCNGG	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	1 cut(s)	239
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
Bpu14I	TTCGAA	1 cut(s)	11
BsaHI	GRCGYC	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	21, 224
BsaWI	WCCGGW	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 122
Bse118I	RCCGGY	3 cut(s)	115, 217, 234
Bse1I	ACTGG	1 cut(s)	101
BseAI	TCCGGA	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	23
BseDI	CCNNGG	2 cut(s)	21, 224
BseLI	CCNNNNNNNGG	2 cut(s)	28, 122
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	1 cut(s)	167
BseSI	GKGCMC	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	1 cut(s)	238
BshNI	GGYRCC	1 cut(s)	220
BsiSI	CCGG	6 cut(s)	72, 85, 116, 218, 235, 287
BslFI	GGGAC	1 cut(s)	4
BslI	CCNNNNNNNGG	2 cut(s)	28, 122
BsmFI	GGGAC	1 cut(s)	4
BsnI	GGCC	1 cut(s)	238
Bsp119I	TTCGAA	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp13I	TCCGGA	1 cut(s)	84
BspACI	CCGC	3 cut(s)	29, 215, 284
BspANI	GGCC	1 cut(s)	238
BspCNI	CTCAG	1 cut(s)	92
BspEI	TCCGGA	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	222
BspQI	GCTCTTC	1 cut(s)	224
BspT104I	TTCGAA	1 cut(s)	11
BspT107I	GGYRCC	1 cut(s)	220
BsrFI	RCCGGY	3 cut(s)	115, 217, 234
BsrI	ACTGG	1 cut(s)	101
BssAI	RCCGGY	3 cut(s)	115, 217, 234
BssECI	CCNNGG	2 cut(s)	21, 224
BssNI	GRCGYC	1 cut(s)	221
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	301
Bst6I	CTCTTC	2 cut(s)	144, 224
BstACI	GRCGYC	1 cut(s)	221
BstBI	TTCGAA	1 cut(s)	11
BstC8I	GCNNGC	3 cut(s)	215, 219, 236
BstDEI	CTNAG	1 cut(s)	79
BstFNI	CGCG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	223
BstNI	CCWGG	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	21
BstSLI	GKGCMC	1 cut(s)	215
BstUI	CGCG	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	3 cut(s)	215, 219, 236
CfoI	GCGC	1 cut(s)	223
Cfr10I	RCCGGY	3 cut(s)	115, 217, 234
CviAII	CATG	2 cut(s)	40, 314
CviJI	RGCY	4 cut(s)	100, 234, 238, 310
CviKI_1	RGCY	4 cut(s)	100, 234, 238, 310
DdeI	CTNAG	1 cut(s)	79
DinI	GGCGCC	1 cut(s)	222
Eam1104I	CTCTTC	2 cut(s)	144, 224
EarI	CTCTTC	2 cut(s)	144, 224
EciI	GGCGGA	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	21
EgeI	GGCGCC	1 cut(s)	222
EheI	GGCGCC	1 cut(s)	222
FaeI	CATG	2 cut(s)	43, 317
FaiI	YATR	2 cut(s)	41, 315
FaqI	GGGAC	1 cut(s)	4
FatI	CATG	2 cut(s)	39, 313
FauI	CCCGC	1 cut(s)	222
GlaI	GCGC	1 cut(s)	222
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	1 cut(s)	238
HapII	CCGG	6 cut(s)	72, 85, 116, 218, 235, 287
HhaI	GCGC	1 cut(s)	223
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	2 cut(s)	43, 317
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HinfI	GANTC	2 cut(s)	44, 75
HpaII	CCGG	6 cut(s)	72, 85, 116, 218, 235, 287
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	2 cut(s)	85, 246
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	2 cut(s)	140, 143
HpyAV	CCTTC	4 cut(s)	26, 44, 252, 262
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4V	TGCA	1 cut(s)	252
HpyF3I	CTNAG	1 cut(s)	79
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	2 cut(s)	43, 317
HspAI	GCGC	1 cut(s)	221
KasI	GGCGCC	1 cut(s)	220
Kpn2I	TCCGGA	1 cut(s)	84
KroI	GCCGGC	2 cut(s)	217, 234
KroNI	GCCGGC	2 cut(s)	219, 236
LguI	GCTCTTC	1 cut(s)	224
LmnI	GCTCC	1 cut(s)	315
LweI	GCATC	1 cut(s)	239
MboII	GAAGA	5 cut(s)	25, 67, 158, 161, 241
MhlI	GDGCHC	1 cut(s)	215
Mly113I	GGCGCC	1 cut(s)	221
MnlI	CCTC	6 cut(s)	29, 114, 145, 148, 219, 249
MreI	CGCCGGCG	1 cut(s)	217
MroI	TCCGGA	1 cut(s)	84
MroNI	GCCGGC	2 cut(s)	217, 234
MspI	CCGG	6 cut(s)	72, 85, 116, 218, 235, 287
MspR9I	CCNGG	1 cut(s)	23
MvaI	CCWGG	1 cut(s)	23
MvnI	CGCG	1 cut(s)	29
NaeI	GCCGGC	2 cut(s)	219, 236
NarI	GGCGCC	1 cut(s)	221
NgoMIV	GCCGGC	2 cut(s)	217, 234
NlaIII	CATG	2 cut(s)	43, 317
NlaIV	GGNNCC	1 cut(s)	222
NmeAIII	GCCGAG	1 cut(s)	249
NspV	TTCGAA	1 cut(s)	11
PciSI	GCTCTTC	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PdiI	GCCGGC	2 cut(s)	219, 236
PfeI	GAWTC	2 cut(s)	44, 75
PluTI	GGCGCC	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	222
SapI	GCTCTTC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	215
SetI	ASST	2 cut(s)	27, 312
SfaNI	GCATC	1 cut(s)	239
SfoI	GGCGCC	1 cut(s)	222
SfuI	TTCGAA	1 cut(s)	11
SgrAI	CRCCGGYG	1 cut(s)	217
SsiI	CCGC	3 cut(s)	29, 215, 284
SspDI	GGCGCC	1 cut(s)	220
StyD4I	CCNGG	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	301
TaqI	TCGA	2 cut(s)	11, 164
TfiI	GAWTC	2 cut(s)	44, 75
TscAI	CASTG	1 cut(s)	108
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.