Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012180.1

Orthogroup ID

OG0004783

Physical Location & Seq

Genomic Coordinates Reverse (-)

5739 .. 6089

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012180.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atgggcttttctggcgagttaggcttggattccgacccccagaaatgggttatagccggaattccgttgcgggctccgttaaagccgatatacaccattgccaacccggtggcggacatcaccgaagcaaaacacggcggcggtgacctggaagaagaagaagagtgtggttcgaccactccgacagctgcggaggcgagaattcctaccaggctgacgtgtccgcctccgccgaggaaaaggaagccggcggctgcttcgaaatgtaactacggtagtgttagagagttcttcactcctcccgacttagaaagcgtcttcatacgccgccatgttgagagggctaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

12.61

Weight (kDa)

6.12

Isoelectric Point (pI)

48.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40460
fragaria_vesca	FvH4_4g25460 FvH4_6g51230
malus_domestica	MD09G1027300.v1.1 MD13G1102700.v1.1 MD16G1102900.v1.1 MD17G1027200.v1.1
prunus_persica	Prupe.1G243100_v2.0.a1 Prupe.3G291500_v2.0.a1
pyrus_communis	pycom13g08980
rosa_chinensis	RchiOBHm_Chr2g0172811 RchiOBHm_Chr4g0432781
rosa_laevigata	RLG00000006812 RLG00000022135
rosa_multiflora	Rmu_sc0002979.1_g000010 Rmu_sc0012180.1_g000003 Rmu_sc0027475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079490 Rroxscaffold_5G00374230
rosa_rugosa	Rorug02G0561900 Rorug04G0262800
rosa_samantha	Rh2AG639600 Rh2BG653000 Rh2CG618800 Rh2DG666700 Rh4AG316900 Rh4BG325200 Rh4CG340100 Rh4DG320300
rosa_wichuraiana	Rw2G052800 Rw4G027570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	9 cut(s)	70, 113, 138, 141, 191, 224, 230, 251, 328
AcsI	RAATTY	2 cut(s)	60, 201
AfiI	CCNNNNNNNGG	3 cut(s)	45, 46, 112
AflIII	ACRYGT	1 cut(s)	218
AjiI	CACGTC	1 cut(s)	219
AjnI	CCWGG	2 cut(s)	147, 209
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
ApeKI	GCWGC	2 cut(s)	188, 254
ApoI	RAATTY	2 cut(s)	60, 201
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	2 cut(s)	112, 155
AsuII	TTCGAA	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	310
BbvI	GCAGC	2 cut(s)	175, 241
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	2 cut(s)	149, 211
BcnI	CCSGG	1 cut(s)	107
BisI	GCNGC	5 cut(s)	139, 189, 252, 255, 328
BlsI	GCNGC	5 cut(s)	140, 190, 253, 256, 329
Bme1390I	CCNGG	3 cut(s)	107, 149, 211
BmgBI	CACGTC	1 cut(s)	219
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	3 cut(s)	107, 149, 211
BpiI	GAAGAC	1 cut(s)	310
Bpu14I	TTCGAA	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 46, 112
Bse118I	RCCGGY	1 cut(s)	247
Bse3DI	GCAATG	1 cut(s)	96
BseBI	CCWGG	2 cut(s)	149, 211
BseDI	CCNNGG	1 cut(s)	233
BseLI	CCNNNNNNNGG	3 cut(s)	45, 46, 112
BseMI	GCAATG	1 cut(s)	96
BseRI	GAGGAG	1 cut(s)	288
BseXI	GCAGC	2 cut(s)	175, 241
BsiSI	CCGG	3 cut(s)	57, 107, 248
BslI	CCNNNNNNNGG	3 cut(s)	45, 46, 112
Bsp119I	TTCGAA	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	76
BspACI	CCGC	9 cut(s)	70, 113, 138, 141, 191, 224, 230, 251, 328
BspLI	GGNNCC	1 cut(s)	75
BspT104I	TTCGAA	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	233
Bst2UI	CCWGG	2 cut(s)	149, 211
Bst4CI	ACNGT	1 cut(s)	275
Bst6I	CTCTTC	1 cut(s)	156
BstBI	TTCGAA	1 cut(s)	260
BstC8I	GCNNGC	2 cut(s)	72, 249
BstDEI	CTNAG	1 cut(s)	307
BstEII	GGTNACC	1 cut(s)	143
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 21, 194
BstNI	CCWGG	2 cut(s)	149, 211
BstPI	GGTNACC	1 cut(s)	143
BstSCI	CCNGG	3 cut(s)	105, 147, 209
BstV1I	GCAGC	2 cut(s)	175, 241
BstV2I	GAAGAC	1 cut(s)	310
BstXI	CCANNNNNNTGG	1 cut(s)	109
BtrI	CACGTC	1 cut(s)	219
Cac8I	GCNNGC	2 cut(s)	72, 249
Cfr10I	RCCGGY	1 cut(s)	247
CseI	GACGC	1 cut(s)	304
CviAII	CATG	1 cut(s)	332
DdeI	CTNAG	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
EciI	GGCGGA	3 cut(s)	128, 213, 219
Eco24I	GRGCYC	1 cut(s)	76
Eco91I	GGTNACC	1 cut(s)	143
EcoO65I	GGTNACC	1 cut(s)	143
EcoRI	GAATTC	2 cut(s)	60, 201
EcoRII	CCWGG	2 cut(s)	147, 209
EcoT38I	GRGCYC	1 cut(s)	76
FaeI	CATG	1 cut(s)	335
FaiI	YATR	4 cut(s)	53, 91, 323, 333
FatI	CATG	1 cut(s)	331
FauI	CCCGC	1 cut(s)	63
Fnu4HI	GCNGC	5 cut(s)	139, 189, 252, 255, 328
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	5 cut(s)	139, 189, 252, 255, 328
GluI	GCNGC	5 cut(s)	139, 189, 252, 255, 328
HapII	CCGG	3 cut(s)	57, 107, 248
HgaI	GACGC	1 cut(s)	304
Hin1II	CATG	1 cut(s)	335
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	3 cut(s)	57, 107, 248
HphI	GGTGA	2 cut(s)	112, 155
Hpy188I	TCNGA	2 cut(s)	34, 183
Hpy188III	TCNNGA	1 cut(s)	302
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4IV	ACGT	1 cut(s)	218
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 21, 194
HpyF3I	CTNAG	1 cut(s)	307
HpySE526I	ACGT	1 cut(s)	218
Hsp92II	CATG	1 cut(s)	335
KroI	GCCGGC	1 cut(s)	247
KroNI	GCCGGC	1 cut(s)	249
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	8 cut(s)	53, 70, 120, 134, 161, 196, 223, 261
Lsp1109I	GCAGC	2 cut(s)	175, 241
MaeII	ACGT	1 cut(s)	218
MaeIII	GTNAC	2 cut(s)	143, 266
MboII	GAAGA	6 cut(s)	164, 167, 170, 173, 283, 310
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	3 cut(s)	60, 201, 346
MmeI	TCCRAC	2 cut(s)	57, 206
MnlI	CCTC	5 cut(s)	187, 228, 237, 309, 333
MroNI	GCCGGC	1 cut(s)	247
MseI	TTAA	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	3 cut(s)	57, 107, 248
MspR9I	CCNGG	3 cut(s)	107, 149, 211
MvaI	CCWGG	2 cut(s)	149, 211
MwoI	GCNNNNNNNGC	3 cut(s)	12, 21, 194
NaeI	GCCGGC	1 cut(s)	249
NciI	CCSGG	1 cut(s)	107
NgoMIV	GCCGGC	1 cut(s)	247
NlaIII	CATG	1 cut(s)	335
NlaIV	GGNNCC	1 cut(s)	75
NmeAIII	GCCGAG	1 cut(s)	258
NmuCI	GTSAC	1 cut(s)	143
NspV	TTCGAA	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	1 cut(s)	179
PdiI	GCCGGC	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	5 cut(s)	140, 190, 253, 256, 329
Psp6I	CCWGG	2 cut(s)	147, 209
PspEI	GGTNACC	1 cut(s)	143
PspGI	CCWGG	2 cut(s)	147, 209
PspN4I	GGNNCC	1 cut(s)	75
PvuII	CAGCTG	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	80
SatI	GCNGC	5 cut(s)	139, 189, 252, 255, 328
ScrFI	CCNGG	3 cut(s)	107, 149, 211
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	3 cut(s)	150, 190, 221
SfuI	TTCGAA	1 cut(s)	260
Sse9I	AATT	3 cut(s)	60, 201, 346
SsiI	CCGC	9 cut(s)	70, 113, 138, 141, 191, 224, 230, 251, 328
StyD4I	CCNGG	3 cut(s)	105, 147, 209
TaaI	ACNGT	1 cut(s)	275
TaiI	ACGT	1 cut(s)	221
TaqI	TCGA	2 cut(s)	173, 260
TasI	AATT	3 cut(s)	60, 201, 346
TauI	GCSGC	3 cut(s)	141, 254, 330
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	2 cut(s)	188, 254
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	310
TspGWI	ACGGA	2 cut(s)	54, 66
XapI	RAATTY	2 cut(s)	60, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.