Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004783

Physical Location & Seq

Genomic Coordinates Reverse (-)

38005906 .. 38006241

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g51230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGGTTTTTCCAAGAAGTCACAAGTGGTGGACGGAGGCCTGGAATCCGAGGGGAAGAAGTGGGTAATTGCCGGAATCTCGGTCAGAGCTTCGCTGAAGCCGGTAAAGACCAAGCCGAGGAGAGCTAAGCAGAGCGAGGAGGGCGGTGAAGAAGAAGAGGCAGGTTCAACAACCCCAACGGCGAAAGAAGCGAGAATACCGGAGACGTTTTCGTGCCCGGCGGCGCCAAGAAAGCGGCGACCGGCGTCGGTGTGTAACTTCAGTGGGGTGAGGGAGTACTTCATCCCACCGGATTTGGAGACGGTTTTCAAACTCCATGTGGAGAAAGCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

12.13

Weight (kDa)

9.39

Isoelectric Point (pI)

54.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40460
fragaria_vesca	FvH4_4g25460 FvH4_6g51230
malus_domestica	MD09G1027300.v1.1 MD13G1102700.v1.1 MD16G1102900.v1.1 MD17G1027200.v1.1
prunus_persica	Prupe.1G243100_v2.0.a1 Prupe.3G291500_v2.0.a1
pyrus_communis	pycom13g08980
rosa_chinensis	RchiOBHm_Chr2g0172811 RchiOBHm_Chr4g0432781
rosa_laevigata	RLG00000006812 RLG00000022135
rosa_multiflora	Rmu_sc0002979.1_g000010 Rmu_sc0012180.1_g000003 Rmu_sc0027475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079490 Rroxscaffold_5G00374230
rosa_rugosa	Rorug02G0561900 Rorug04G0262800
rosa_samantha	Rh2AG639600 Rh2BG653000 Rh2CG618800 Rh2DG666700 Rh4AG316900 Rh4BG325200 Rh4CG340100 Rh4DG320300
rosa_wichuraiana	Rw2G052800 Rw4G027570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	152
AccB1I	GGYRCC	1 cut(s)	223
AciI	CCGC	3 cut(s)	144, 221, 235
AcuI	CTGAAG	2 cut(s)	116, 244
AcyI	GRCGYC	2 cut(s)	224, 245
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	168, 310
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	2 cut(s)	89, 125
AluI	AGCT	2 cut(s)	89, 125
Alw26I	GTCTC	2 cut(s)	197, 293
AoxI	GGCC	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	226
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	2 cut(s)	158, 280
BaeGI	GKGCMC	1 cut(s)	218
BanI	GGYRCC	1 cut(s)	223
BarI	GAAGNNNNNNTAC	2 cut(s)	180, 212
BceAI	ACGGC	1 cut(s)	195
BciT130I	CCWGG	1 cut(s)	41
BcnI	CCSGG	1 cut(s)	218
BcoDI	GTCTC	2 cut(s)	197, 293
BfoI	RGCGCY	1 cut(s)	227
BfuAI	ACCTGC	1 cut(s)	152
BisI	GCNGC	2 cut(s)	222, 236
BlpI	GCTNAGC	1 cut(s)	126
BlsI	GCNGC	2 cut(s)	223, 237
BmcAI	AGTACT	1 cut(s)	278
Bme1390I	CCNGG	2 cut(s)	41, 218
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	2 cut(s)	41, 218
BoxI	GACNNNNGTC	1 cut(s)	244
Bpu1102I	GCTNAGC	1 cut(s)	126
BpuMI	CCSGG	1 cut(s)	218
BsaHI	GRCGYC	2 cut(s)	224, 245
BsaJI	CCNNGG	2 cut(s)	48, 116
BsaWI	WCCGGW	2 cut(s)	199, 289
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse118I	RCCGGY	2 cut(s)	100, 241
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	48, 116
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseRI	GAGGAG	2 cut(s)	133, 152
BseSI	GKGCMC	1 cut(s)	218
Bsh1285I	CGRYCG	1 cut(s)	242
BshFI	GGCC	1 cut(s)	39
BshNI	GGYRCC	1 cut(s)	223
BsiEI	CGRYCG	1 cut(s)	242
BsiSI	CCGG	6 cut(s)	72, 101, 200, 218, 242, 290
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmAI	GTCTC	2 cut(s)	197, 293
BsmBI	CGTCTC	2 cut(s)	197, 293
BsnI	GGCC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp1720I	GCTNAGC	1 cut(s)	126
BspACI	CCGC	3 cut(s)	144, 221, 235
BspANI	GGCC	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	225
BspMI	ACCTGC	1 cut(s)	152
BspT107I	GGYRCC	1 cut(s)	223
BsrFI	RCCGGY	2 cut(s)	100, 241
BssAI	RCCGGY	2 cut(s)	100, 241
BssECI	CCNNGG	2 cut(s)	48, 116
BssNI	GRCGYC	2 cut(s)	224, 245
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	1 cut(s)	150
BstACI	GRCGYC	2 cut(s)	224, 245
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	282
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	226
BstMAI	GTCTC	2 cut(s)	197, 293
BstMCI	CGRYCG	1 cut(s)	242
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 188, 232
BstNI	CCWGG	1 cut(s)	41
BstPAI	GACNNNNGTC	1 cut(s)	244
BstSCI	CCNGG	2 cut(s)	39, 216
BstSLI	GKGCMC	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	268
BveI	ACCTGC	1 cut(s)	152
CfoI	GCGC	1 cut(s)	226
Cfr10I	RCCGGY	2 cut(s)	100, 241
CseI	GACGC	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	277
CspCI	CAANNNNNGTGG	2 cut(s)	276, 311
CviAII	CATG	1 cut(s)	317
CviJI	RGCY	5 cut(s)	39, 89, 100, 115, 125
CviKI_1	RGCY	5 cut(s)	39, 89, 100, 115, 125
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	1 cut(s)	126
DinI	GGCGCC	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco147I	AGGCCT	1 cut(s)	39
Eco57I	CTGAAG	2 cut(s)	116, 244
EcoRII	CCWGG	1 cut(s)	39
EgeI	GGCGCC	1 cut(s)	225
EheI	GGCGCC	1 cut(s)	225
Esp3I	CGTCTC	2 cut(s)	197, 293
FaeI	CATG	1 cut(s)	320
FaiI	YATR	1 cut(s)	318
FatI	CATG	1 cut(s)	316
Fnu4HI	GCNGC	2 cut(s)	222, 236
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	2 cut(s)	222, 236
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	2 cut(s)	222, 236
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	6 cut(s)	72, 101, 200, 218, 242, 290
HgaI	GACGC	1 cut(s)	234
HhaI	GCGC	1 cut(s)	226
Hin1I	GRCGYC	2 cut(s)	224, 245
Hin1II	CATG	1 cut(s)	320
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HinfI	GANTC	2 cut(s)	44, 75
HpaII	CCGG	6 cut(s)	72, 101, 200, 218, 242, 290
HphI	GGTGA	2 cut(s)	158, 280
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	2 cut(s)	49, 86
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	1 cut(s)	206
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 188, 232
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	1 cut(s)	206
Hsp92I	GRCGYC	2 cut(s)	224, 245
Hsp92II	CATG	1 cut(s)	320
HspAI	GCGC	1 cut(s)	224
KasI	GGCGCC	1 cut(s)	223
LpnPI	CCDG	9 cut(s)	26, 53, 85, 114, 147, 213, 231, 255, 303
MaeII	ACGT	1 cut(s)	206
MaeIII	GTNAC	2 cut(s)	18, 254
MboII	GAAGA	4 cut(s)	67, 161, 164, 167
MhlI	GDGCHC	1 cut(s)	218
MluCI	AATT	1 cut(s)	66
Mly113I	GGCGCC	1 cut(s)	224
MnlI	CCTC	7 cut(s)	29, 43, 111, 130, 133, 151, 264
MspI	CCGG	6 cut(s)	72, 101, 200, 218, 242, 290
MspR9I	CCNGG	2 cut(s)	41, 218
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	3 cut(s)	141, 188, 232
NarI	GGCGCC	1 cut(s)	224
NciI	CCSGG	1 cut(s)	218
NlaIII	CATG	1 cut(s)	320
NlaIV	GGNNCC	1 cut(s)	225
NmeAIII	GCCGAG	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	18
PceI	AGGCCT	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	44, 75
PkrI	GCNGC	2 cut(s)	223, 237
PluTI	GGCGCC	1 cut(s)	227
PshAI	GACNNNNGTC	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	225
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SatI	GCNGC	2 cut(s)	222, 236
ScaI	AGTACT	1 cut(s)	278
ScrFI	CCNGG	2 cut(s)	41, 218
SduI	GDGCHC	1 cut(s)	218
SetI	ASST	4 cut(s)	91, 127, 166, 209
SfoI	GGCGCC	1 cut(s)	225
Sse9I	AATT	1 cut(s)	66
SseBI	AGGCCT	1 cut(s)	39
SsiI	CCGC	3 cut(s)	144, 221, 235
SspDI	GGCGCC	1 cut(s)	223
StuI	AGGCCT	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	39, 216
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	1 cut(s)	209
TaqII	GACCGA	1 cut(s)	70
TasI	AATT	1 cut(s)	66
TatI	WGTACW	1 cut(s)	276
TauI	GCSGC	2 cut(s)	224, 238
TfiI	GAWTC	2 cut(s)	44, 75
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	1 cut(s)	18
Tsp45I	GTSAC	1 cut(s)	18
TspDTI	ATGAA	1 cut(s)	271
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	1 cut(s)	268
ZrmI	AGTACT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.