Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0004783

Physical Location & Seq

Genomic Coordinates Reverse (-)

7204464 .. 7204925

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1102900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCCCTGCCTCCTCCTCCTCCGTTTTCATCACTCAAAAGGGAAGAAAAAAGAACCCATCTTTTTTTTTATTCCACCCTTTATTCCCTGCTATATTTATCTCACCGATTCCGCTGCAATTTCCCAGAGAGAAATGGGATTTTCCGGGAAATCTCAGCCGGTGGATCACATGGGTTTCGATTCCGACCCTAAAAAATCATGGGTCGTCGCCGGAATCTCACTACGTGCGCCGTTAAAGCCGTTGTATACAAATCCGGTAGAGCAAGTTGACGGGGAAGAGTGCTCGACGACTCCCACGGCGGAAGAAGCCAGGATTCCGGCGAGGCTGACGTGTCCGCCTCCTCCCAGAAAACGTAAAGCTGCTGCTGCTTCGAAATGCAAATTTAATGGTGCTCGGGAGTTCTTCACTCCTCCAGATTTAGAAACCGTGTTTATACGACGCCATGTTGAAAGGGCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.22

Weight (kDa)

9.32

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40460
fragaria_vesca	FvH4_4g25460 FvH4_6g51230
malus_domestica	MD09G1027300.v1.1 MD13G1102700.v1.1 MD16G1102900.v1.1 MD17G1027200.v1.1
prunus_persica	Prupe.1G243100_v2.0.a1 Prupe.3G291500_v2.0.a1
pyrus_communis	pycom13g08980
rosa_chinensis	RchiOBHm_Chr2g0172811 RchiOBHm_Chr4g0432781
rosa_laevigata	RLG00000006812 RLG00000022135
rosa_multiflora	Rmu_sc0002979.1_g000010 Rmu_sc0012180.1_g000003 Rmu_sc0027475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079490 Rroxscaffold_5G00374230
rosa_rugosa	Rorug02G0561900 Rorug04G0262800
rosa_samantha	Rh2AG639600 Rh2BG653000 Rh2CG618800 Rh2DG666700 Rh4AG316900 Rh4BG325200 Rh4CG340100 Rh4DG320300
rosa_wichuraiana	Rw2G052800 Rw4G027570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	245
AciI	CCGC	3 cut(s)	111, 299, 335
AclWI	GGATC	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	380
AcyI	GRCGYC	1 cut(s)	439
AdeI	CACNNNGTG	1 cut(s)	224
AflIII	ACRYGT	1 cut(s)	329
AgsI	TTSAA	1 cut(s)	449
AjiI	CACGTC	1 cut(s)	330
AjnI	CCWGG	1 cut(s)	308
AluBI	AGCT	1 cut(s)	359
AluI	AGCT	1 cut(s)	359
Alw21I	GWGCWC	2 cut(s)	284, 394
AlwI	GGATC	1 cut(s)	171
Ama87I	CYCGRG	1 cut(s)	393
AoxI	GGCC	1 cut(s)	453
ApeKI	GCWGC	4 cut(s)	113, 359, 362, 365
ApoI	RAATTY	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	453
AsuC2I	CCSGG	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	94
AsuII	TTCGAA	1 cut(s)	371
AvaI	CYCGRG	1 cut(s)	393
Bbv12I	GWGCWC	2 cut(s)	284, 394
BbvI	GCAGC	4 cut(s)	100, 346, 349, 352
BccI	CCATC	1 cut(s)	65
BceAI	ACGGC	3 cut(s)	214, 223, 312
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BciT130I	CCWGG	1 cut(s)	310
BcnI	CCSGG	1 cut(s)	145
BisI	GCNGC	4 cut(s)	114, 360, 363, 366
BlsI	GCNGC	4 cut(s)	115, 361, 364, 367
Bme1390I	CCNGG	2 cut(s)	145, 310
BmeT110I	CYCGRG	1 cut(s)	393
BmgBI	CACGTC	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	453
BmrFI	CCNGG	2 cut(s)	145, 310
BpmI	CTGGAG	1 cut(s)	396
Bpu14I	TTCGAA	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	145
BsaAI	YACGTR	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	439
BsaJI	CCNNGG	1 cut(s)	294
BsaWI	WCCGGW	1 cut(s)	253
Bse118I	RCCGGY	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	310
BseDI	CCNNGG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	167
BseRI	GAGGAG	4 cut(s)	5, 8, 330, 399
BseXI	GCAGC	4 cut(s)	100, 346, 349, 352
BshFI	GGCC	1 cut(s)	455
BsiHKAI	GWGCWC	2 cut(s)	284, 394
BsiHKCI	CYCGRG	1 cut(s)	393
BsiSI	CCGG	5 cut(s)	144, 158, 210, 254, 317
BsnI	GGCC	1 cut(s)	455
BsoBI	CYCGRG	1 cut(s)	393
Bsp119I	TTCGAA	1 cut(s)	371
Bsp1286I	GDGCHC	2 cut(s)	284, 394
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	3 cut(s)	111, 299, 335
BspANI	GGCC	1 cut(s)	455
BspCNI	CTCAG	1 cut(s)	166
BspPI	GGATC	1 cut(s)	171
BspT104I	TTCGAA	1 cut(s)	371
BsrFI	RCCGGY	1 cut(s)	157
BssAI	RCCGGY	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	1 cut(s)	163
BssNAI	GTATAC	1 cut(s)	246
BssNI	GRCGYC	1 cut(s)	439
Bst1107I	GTATAC	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	310
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	270
BstACI	GRCGYC	1 cut(s)	439
BstBAI	YACGTR	1 cut(s)	224
BstBI	TTCGAA	1 cut(s)	371
BstDEI	CTNAG	1 cut(s)	153
BstDSI	CCRYGG	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	3 cut(s)	235, 305, 365
BstNI	CCWGG	1 cut(s)	310
BstSCI	CCNGG	2 cut(s)	143, 308
BstV1I	GCAGC	4 cut(s)	100, 346, 349, 352
BstZ17I	GTATAC	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	455
BtgI	CCRYGG	1 cut(s)	294
BtrI	CACGTC	1 cut(s)	330
CfoI	GCGC	1 cut(s)	229
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	1 cut(s)	453
CseI	GACGC	1 cut(s)	447
CviAII	CATG	3 cut(s)	169, 198, 443
CviJI	RGCY	6 cut(s)	157, 238, 308, 325, 359, 455
CviKI_1	RGCY	6 cut(s)	157, 238, 308, 325, 359, 455
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
DraIII	CACNNNGTG	1 cut(s)	224
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
EciI	GGCGGA	2 cut(s)	314, 324
Eco88I	CYCGRG	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	308
FaeI	CATG	3 cut(s)	172, 201, 446
FaiI	YATR	6 cut(s)	93, 170, 199, 246, 434, 444
FatI	CATG	3 cut(s)	168, 197, 442
FblI	GTMKAC	1 cut(s)	245
Fnu4HI	GCNGC	4 cut(s)	114, 360, 363, 366
Fsp4HI	GCNGC	4 cut(s)	114, 360, 363, 366
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	4 cut(s)	114, 360, 363, 366
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	455
HapII	CCGG	5 cut(s)	144, 158, 210, 254, 317
HgaI	GACGC	1 cut(s)	447
HhaI	GCGC	1 cut(s)	229
Hin1I	GRCGYC	1 cut(s)	439
Hin1II	CATG	3 cut(s)	172, 201, 446
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	5 cut(s)	107, 179, 213, 289, 313
HpaII	CCGG	5 cut(s)	144, 158, 210, 254, 317
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	2 cut(s)	246, 268
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	2 cut(s)	395, 413
Hpy8I	GTNNAC	2 cut(s)	246, 268
Hpy99I	CGWCG	3 cut(s)	209, 289, 441
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	3 cut(s)	223, 329, 352
HpyCH4V	TGCA	2 cut(s)	116, 378
HpyF10VI	GCNNNNNNNGC	3 cut(s)	235, 305, 365
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	3 cut(s)	223, 329, 352
Hsp92I	GRCGYC	1 cut(s)	439
Hsp92II	CATG	3 cut(s)	172, 201, 446
HspAI	GCGC	1 cut(s)	227
Kzo9I	GATC	1 cut(s)	163
Lsp1109I	GCAGC	4 cut(s)	100, 346, 349, 352
MaeII	ACGT	3 cut(s)	223, 329, 352
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	4 cut(s)	55, 287, 314, 394
MhlI	GDGCHC	2 cut(s)	284, 394
MluCI	AATT	2 cut(s)	117, 380
MlyI	GAGTC	1 cut(s)	283
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	8 cut(s)	20, 23, 26, 29, 315, 348, 351, 420
MseI	TTAA	2 cut(s)	233, 384
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	5 cut(s)	144, 158, 210, 254, 317
MspR9I	CCNGG	2 cut(s)	145, 310
MvaI	CCWGG	1 cut(s)	310
MwoI	GCNNNNNNNGC	3 cut(s)	235, 305, 365
NciI	CCSGG	1 cut(s)	145
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	3 cut(s)	172, 201, 446
NspV	TTCGAA	1 cut(s)	371
PfeI	GAWTC	4 cut(s)	107, 179, 213, 313
PfoI	TCCNGGA	1 cut(s)	143
PkrI	GCNGC	4 cut(s)	115, 361, 364, 367
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
Ppu21I	YACGTR	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	308
PspPI	GGNCC	1 cut(s)	453
SaqAI	TTAA	2 cut(s)	233, 384
SatI	GCNGC	4 cut(s)	114, 360, 363, 366
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	1 cut(s)	453
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	2 cut(s)	145, 310
SduI	GDGCHC	2 cut(s)	284, 394
SetI	ASST	4 cut(s)	226, 332, 355, 361
SfuI	TTCGAA	1 cut(s)	371
Sse9I	AATT	2 cut(s)	117, 380
SsiI	CCGC	3 cut(s)	111, 299, 335
StyD4I	CCNGG	2 cut(s)	143, 308
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	3 cut(s)	226, 332, 355
TaqI	TCGA	3 cut(s)	177, 284, 371
TasI	AATT	2 cut(s)	117, 380
TfiI	GAWTC	4 cut(s)	107, 179, 213, 313
Tru1I	TTAA	2 cut(s)	233, 384
Tru9I	TTAA	2 cut(s)	233, 384
TseI	GCWGC	4 cut(s)	113, 359, 362, 365
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	11
XapI	RAATTY	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.