Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004783

Physical Location & Seq

Genomic Coordinates Forward (+)

59976566 .. 59977645

Gene Structure 1080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG340100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGGCTTTTCTGGCGACTTAGGCTTGGATTCCGACCCCCAGAAATGGGTTATAGCCGGAATTCCGTTGCGGGCTCCGTTAAAGCCGATATACACCATTGCCAACCCGGTGGCGGACATCACCGAAGCAAACCACGGCGGCGGTGACGTGGAAGAAGAAGAAGAAGAGTGTGGTTCGACGACTCCGACCGCTGCGGAGGCGAGAATTCCAACCAGGCTGACGTGTCCTCCTCCGCCGAGGAAAAGGAAGACGGCGGCTGCTTCGAAATGTAACTACGGTAGTGTTAGAGAGTTCTTCACCCCTCCCGACTTAGAAAGCGTCTTCATACGCCGCCATGTCGAGAGGGCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

12.7

Weight (kDa)

5.38

Isoelectric Point (pI)

50.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40460
fragaria_vesca	FvH4_4g25460 FvH4_6g51230
malus_domestica	MD09G1027300.v1.1 MD13G1102700.v1.1 MD16G1102900.v1.1 MD17G1027200.v1.1
prunus_persica	Prupe.1G243100_v2.0.a1 Prupe.3G291500_v2.0.a1
pyrus_communis	pycom13g08980
rosa_chinensis	RchiOBHm_Chr2g0172811 RchiOBHm_Chr4g0432781
rosa_laevigata	RLG00000006812 RLG00000022135
rosa_multiflora	Rmu_sc0002979.1_g000010 Rmu_sc0012180.1_g000003 Rmu_sc0027475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079490 Rroxscaffold_5G00374230
rosa_rugosa	Rorug02G0561900 Rorug04G0262800
rosa_samantha	Rh2AG639600 Rh2BG653000 Rh2CG618800 Rh2DG666700 Rh4AG316900 Rh4BG325200 Rh4CG340100 Rh4DG320300
rosa_wichuraiana	Rw2G052800 Rw4G027570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	9 cut(s)	70, 113, 138, 141, 189, 194, 233, 254, 331
AcsI	RAATTY	2 cut(s)	60, 204
AfiI	CCNNNNNNNGG	3 cut(s)	45, 46, 112
AflIII	ACRYGT	1 cut(s)	221
AjiI	CACGTC	2 cut(s)	148, 222
AjnI	CCWGG	1 cut(s)	212
ApeKI	GCWGC	2 cut(s)	191, 257
ApoI	RAATTY	2 cut(s)	60, 204
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	3 cut(s)	112, 155, 289
AsuII	TTCGAA	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	76
BbsI	GAAGAC	2 cut(s)	254, 313
BbvI	GCAGC	2 cut(s)	178, 244
BceAI	ACGGC	2 cut(s)	151, 267
BciT130I	CCWGG	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	107
BisI	GCNGC	5 cut(s)	139, 192, 255, 258, 331
BlsI	GCNGC	5 cut(s)	140, 193, 256, 259, 332
Bme1390I	CCNGG	2 cut(s)	107, 214
BmgBI	CACGTC	2 cut(s)	148, 222
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	2 cut(s)	107, 214
BpiI	GAAGAC	2 cut(s)	254, 313
Bpu14I	TTCGAA	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	107
BsaJI	CCNNGG	2 cut(s)	133, 236
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 46, 112
Bse3DI	GCAATG	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	2 cut(s)	133, 236
BseLI	CCNNNNNNNGG	3 cut(s)	45, 46, 112
BseMI	GCAATG	1 cut(s)	96
BseRI	GAGGAG	1 cut(s)	219
BseXI	GCAGC	2 cut(s)	178, 244
Bsh1285I	CGRYCG	1 cut(s)	189
BsiEI	CGRYCG	1 cut(s)	189
BsiSI	CCGG	2 cut(s)	57, 107
BslI	CCNNNNNNNGG	3 cut(s)	45, 46, 112
Bsp119I	TTCGAA	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	76
BspACI	CCGC	9 cut(s)	70, 113, 138, 141, 189, 194, 233, 254, 331
BspLI	GGNNCC	1 cut(s)	75
BspT104I	TTCGAA	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	96
BssECI	CCNNGG	2 cut(s)	133, 236
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	1 cut(s)	159
BstBI	TTCGAA	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	19, 310
BstDSI	CCRYGG	1 cut(s)	133
BstMCI	CGRYCG	1 cut(s)	189
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 21, 197
BstNI	CCWGG	1 cut(s)	214
BstSCI	CCNGG	2 cut(s)	105, 212
BstV1I	GCAGC	2 cut(s)	178, 244
BstV2I	GAAGAC	2 cut(s)	254, 313
BstXI	CCANNNNNNTGG	1 cut(s)	109
BtgI	CCRYGG	1 cut(s)	133
BtrI	CACGTC	2 cut(s)	148, 222
Cac8I	GCNNGC	1 cut(s)	72
CseI	GACGC	1 cut(s)	307
CviAII	CATG	1 cut(s)	335
CviJI	RGCY	8 cut(s)	6, 24, 56, 74, 85, 217, 257, 347
CviKI_1	RGCY	8 cut(s)	6, 24, 56, 74, 85, 217, 257, 347
DdeI	CTNAG	2 cut(s)	19, 310
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
EciI	GGCGGA	2 cut(s)	128, 222
Eco24I	GRGCYC	1 cut(s)	76
EcoRI	GAATTC	2 cut(s)	60, 204
EcoRII	CCWGG	1 cut(s)	212
EcoT38I	GRGCYC	1 cut(s)	76
FaeI	CATG	1 cut(s)	338
FaiI	YATR	4 cut(s)	53, 91, 326, 336
FatI	CATG	1 cut(s)	334
FauI	CCCGC	1 cut(s)	63
Fnu4HI	GCNGC	5 cut(s)	139, 192, 255, 258, 331
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	5 cut(s)	139, 192, 255, 258, 331
GluI	GCNGC	5 cut(s)	139, 192, 255, 258, 331
HapII	CCGG	2 cut(s)	57, 107
HgaI	GACGC	1 cut(s)	307
Hin1II	CATG	1 cut(s)	338
HinfI	GANTC	2 cut(s)	29, 181
HpaII	CCGG	2 cut(s)	57, 107
HphI	GGTGA	3 cut(s)	112, 155, 289
Hpy188I	TCNGA	2 cut(s)	34, 186
Hpy188III	TCNNGA	2 cut(s)	305, 340
Hpy99I	CGWCG	1 cut(s)	181
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4IV	ACGT	2 cut(s)	147, 221
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 21, 197
HpyF3I	CTNAG	2 cut(s)	19, 310
HpySE526I	ACGT	2 cut(s)	147, 221
Hsp92II	CATG	1 cut(s)	338
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	5 cut(s)	53, 70, 120, 199, 226
Lsp1109I	GCAGC	2 cut(s)	178, 244
MaeII	ACGT	2 cut(s)	147, 221
MaeIII	GTNAC	2 cut(s)	143, 269
MboII	GAAGA	8 cut(s)	164, 167, 170, 173, 176, 259, 286, 313
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	3 cut(s)	60, 204, 349
MlyI	GAGTC	1 cut(s)	175
MmeI	TCCRAC	3 cut(s)	57, 209, 233
MnlI	CCTC	6 cut(s)	190, 231, 237, 240, 312, 336
MseI	TTAA	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	2 cut(s)	57, 107
MspR9I	CCNGG	2 cut(s)	107, 214
MvaI	CCWGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	3 cut(s)	12, 21, 197
NciI	CCSGG	1 cut(s)	107
NlaIII	CATG	1 cut(s)	338
NlaIV	GGNNCC	1 cut(s)	75
NmeAIII	GCCGAG	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	143
NspV	TTCGAA	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	5 cut(s)	140, 193, 256, 259, 332
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	80
SatI	GCNGC	5 cut(s)	139, 192, 255, 258, 331
SchI	GAGTC	1 cut(s)	175
ScrFI	CCNGG	2 cut(s)	107, 214
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	2 cut(s)	150, 224
SfuI	TTCGAA	1 cut(s)	263
Sse9I	AATT	3 cut(s)	60, 204, 349
SsiI	CCGC	9 cut(s)	70, 113, 138, 141, 189, 194, 233, 254, 331
StyD4I	CCNGG	2 cut(s)	105, 212
TaaI	ACNGT	1 cut(s)	278
TaiI	ACGT	2 cut(s)	150, 224
TaqI	TCGA	3 cut(s)	176, 263, 339
TasI	AATT	3 cut(s)	60, 204, 349
TauI	GCSGC	3 cut(s)	141, 257, 333
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	2 cut(s)	191, 257
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	313
TspGWI	ACGGA	2 cut(s)	54, 66
XapI	RAATTY	2 cut(s)	60, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.