Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004783

Physical Location & Seq

Genomic Coordinates Reverse (-)

1944957 .. 1945289

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1027200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGTTTTTTCGAAGAAGTCCCAGGTGGTGGACGGTGGCATGGAATCCGAAGGCAAGAAGTGGGTAATCGCCGGAATCTCGGTACGAACTTGCTTAAAGCCGGTAAACACAAAATCGGCGAGGGGGAAGGAGACAGACGACGTAGAAGAAGAGGAGGAGTATTCGACAACCCCAACAGCGAAAGAAACAAGAATACCGGAGATTTTGTCATGCCCGCCGGCGCCGAGAAAGAGTCGGCCGCCTTCCAGATGCAACTTCAGTGGCGTGAAGGAGTTCTTCACACCGCCGGATTTGGAAACGGTGTTCAAGCTCCATGTTGAGAAAGCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

12.24

Weight (kDa)

7.68

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40460
fragaria_vesca	FvH4_4g25460 FvH4_6g51230
malus_domestica	MD09G1027300.v1.1 MD13G1102700.v1.1 MD16G1102900.v1.1 MD17G1027200.v1.1
prunus_persica	Prupe.1G243100_v2.0.a1 Prupe.3G291500_v2.0.a1
pyrus_communis	pycom13g08980
rosa_chinensis	RchiOBHm_Chr2g0172811 RchiOBHm_Chr4g0432781
rosa_laevigata	RLG00000006812 RLG00000022135
rosa_multiflora	Rmu_sc0002979.1_g000010 Rmu_sc0012180.1_g000003 Rmu_sc0027475.1_g000002
rosa_roxburghii	Rroxscaffold_2G00079490 Rroxscaffold_5G00374230
rosa_rugosa	Rorug02G0561900 Rorug04G0262800
rosa_samantha	Rh2AG639600 Rh2BG653000 Rh2CG618800 Rh2DG666700 Rh4AG316900 Rh4BG325200 Rh4CG340100 Rh4DG320300
rosa_wichuraiana	Rw2G052800 Rw4G027570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	220
AccB7I	CCANNNNNTGG	1 cut(s)	28
AciI	CCGC	3 cut(s)	215, 239, 284
AcoI	YGGCCR	1 cut(s)	236
AcuI	CTGAAG	1 cut(s)	241
AcyI	GRCGYC	1 cut(s)	221
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	21
AloI	GAACNNNNNNTCC	2 cut(s)	287, 319
AluBI	AGCT	1 cut(s)	310
AluI	AGCT	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	125
AoxI	GGCC	1 cut(s)	236
Asp700I	GAANNNNTTC	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	223
AsuII	TTCGAA	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	220
BciT130I	CCWGG	1 cut(s)	23
BcoDI	GTCTC	1 cut(s)	125
BfoI	RGCGCY	1 cut(s)	224
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme1390I	CCNGG	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	1 cut(s)	239
Bpu14I	TTCGAA	1 cut(s)	11
BsaHI	GRCGYC	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse118I	RCCGGY	2 cut(s)	100, 217
BseBI	CCWGG	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	21
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseRI	GAGGAG	2 cut(s)	167, 170
BseX3I	CGGCCG	1 cut(s)	236
Bsh1285I	CGRYCG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	238
BshNI	GGYRCC	1 cut(s)	220
BsiEI	CGRYCG	1 cut(s)	239
BsiSI	CCGG	5 cut(s)	72, 101, 197, 218, 287
BslFI	GGGAC	1 cut(s)	4
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmAI	GTCTC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	4
BsnI	GGCC	1 cut(s)	238
Bsp119I	TTCGAA	1 cut(s)	11
BspACI	CCGC	3 cut(s)	215, 239, 284
BspANI	GGCC	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	222
BspT104I	TTCGAA	1 cut(s)	11
BspT107I	GGYRCC	1 cut(s)	220
BsrFI	RCCGGY	2 cut(s)	100, 217
BssAI	RCCGGY	2 cut(s)	100, 217
BssECI	CCNNGG	1 cut(s)	21
BssNI	GRCGYC	1 cut(s)	221
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	2 cut(s)	35, 301
Bst6I	CTCTTC	1 cut(s)	144
BstACI	GRCGYC	1 cut(s)	221
BstBI	TTCGAA	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	215, 219
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	223
BstMAI	GTCTC	1 cut(s)	125
BstMCI	CGRYCG	1 cut(s)	239
BstNI	CCWGG	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	21
BstZI	CGGCCG	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	265
Cac8I	GCNNGC	2 cut(s)	215, 219
CfoI	GCGC	1 cut(s)	223
Cfr10I	RCCGGY	2 cut(s)	100, 217
Csp6I	GTAC	1 cut(s)	83
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviAII	CATG	3 cut(s)	40, 210, 314
CviJI	RGCY	3 cut(s)	100, 238, 310
CviKI_1	RGCY	3 cut(s)	100, 238, 310
CviQI	GTAC	1 cut(s)	83
DinI	GGCGCC	1 cut(s)	222
EaeI	YGGCCR	1 cut(s)	236
EagI	CGGCCG	1 cut(s)	236
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
EclXI	CGGCCG	1 cut(s)	236
Eco52I	CGGCCG	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	21
EgeI	GGCGCC	1 cut(s)	222
EheI	GGCGCC	1 cut(s)	222
FaeI	CATG	3 cut(s)	43, 213, 317
FaiI	YATR	3 cut(s)	41, 211, 315
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FaqI	GGGAC	1 cut(s)	4
FatI	CATG	3 cut(s)	39, 209, 313
FauI	CCCGC	1 cut(s)	222
Fnu4HI	GCNGC	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	239
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	1 cut(s)	239
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	1 cut(s)	238
HapII	CCGG	5 cut(s)	72, 101, 197, 218, 287
HhaI	GCGC	1 cut(s)	223
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	3 cut(s)	43, 213, 317
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HinfI	GANTC	3 cut(s)	44, 75, 232
HpaII	CCGG	5 cut(s)	72, 101, 197, 218, 287
Hpy166II	GTNNAC	2 cut(s)	31, 106
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	1 cut(s)	246
Hpy8I	GTNNAC	2 cut(s)	31, 106
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	4 cut(s)	44, 121, 252, 262
HpyCH4III	ACNGT	2 cut(s)	35, 301
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	141
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	3 cut(s)	43, 213, 317
HspAI	GCGC	1 cut(s)	221
KasI	GGCGCC	1 cut(s)	220
KroI	GCCGGC	1 cut(s)	217
KroNI	GCCGGC	1 cut(s)	219
LmnI	GCTCC	1 cut(s)	315
LpnPI	CCDG	8 cut(s)	8, 35, 85, 114, 210, 231, 259, 300
LweI	GCATC	1 cut(s)	239
MaeII	ACGT	1 cut(s)	141
MboII	GAAGA	4 cut(s)	25, 158, 161, 268
Mly113I	GGCGCC	1 cut(s)	221
MlyI	GAGTC	1 cut(s)	241
MnlI	CCTC	3 cut(s)	114, 145, 148
MreI	CGCCGGCG	1 cut(s)	217
MroNI	GCCGGC	1 cut(s)	217
MroXI	GAANNNNTTC	1 cut(s)	272
MseI	TTAA	1 cut(s)	95
MspI	CCGG	5 cut(s)	72, 101, 197, 218, 287
MspR9I	CCNGG	1 cut(s)	23
MvaI	CCWGG	1 cut(s)	23
NaeI	GCCGGC	1 cut(s)	219
NarI	GGCGCC	1 cut(s)	221
NgoMIV	GCCGGC	1 cut(s)	217
NlaIII	CATG	3 cut(s)	43, 213, 317
NlaIV	GGNNCC	1 cut(s)	222
NmeAIII	GCCGAG	1 cut(s)	249
NspV	TTCGAA	1 cut(s)	11
PdiI	GCCGGC	1 cut(s)	219
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	44, 75
PflMI	CCANNNNNTGG	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	240
PleI	GAGTC	1 cut(s)	240
PluTI	GGCGCC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	222
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	1 cut(s)	239
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	23
SetI	ASST	3 cut(s)	27, 144, 312
SfaNI	GCATC	1 cut(s)	239
SfoI	GGCGCC	1 cut(s)	222
SfuI	TTCGAA	1 cut(s)	11
SgrAI	CRCCGGYG	1 cut(s)	217
SsiI	CCGC	3 cut(s)	215, 239, 284
SspDI	GGCGCC	1 cut(s)	220
StyD4I	CCNGG	1 cut(s)	21
TaaI	ACNGT	2 cut(s)	35, 301
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	2 cut(s)	11, 164
TauI	GCSGC	1 cut(s)	241
TfiI	GAWTC	2 cut(s)	44, 75
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TscAI	CASTG	1 cut(s)	265
TspRI	CASTG	1 cut(s)	265
Van91I	CCANNNNNTGG	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.