FvH4_4g27000

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013340
Physical Location & Seq
Forward (+)
28174797 .. 28179004
4208 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g27000.t1

Sequence Viewer

Length: 1245 bp
ATGGGCTCGGGTTCGAAATTGGAAGGCACATCAGCTCTGCCGATACGGCGTGACCCCTACGAAGTCTTGTGCGTTTCTAGGGATTCATCTGACCAGGAAATCAAAACCGCCTACCGCAAACTCGCTCTCAAGTTTCATCCGGACAAGAACACCAATAATCCGGAAGCCGCGGAACAGTTCAAGGAGGTTGCGTTTTCGTATAGCATCTTGTCTGACCCGGAGAAGAGGAGGCAGTATGACAATGCTGGATTTGAGGCTATTGATGCTGAGGGCATGGACATGGAAATCGACTTGTCAAATCTTGGAACTGTCAATACTATGTTTGCAGCTCTGTTCAGCAAGTTGGGTGTCCCTATCAAGACTACAATATCAGCTACTGTGCTTGAAGAAGCTCTAAATGGTATTGTTACAGTTAGACCTCTCCCAGTTGGAACATCAGTTAGTGGAAAGGTGGAGAAACAATGTGCCCACTTTTTTGGTGTAACAATCAGTGAGCAACAAGCCGAGGCAGGGATTGTAGTAAGAGTTACTTCAACTGCTCAAAGTAAATTTAAGTTGCTCTATTTTGAGCAAGATGCCAATGCTGGATACGGTTTGGCCTTACAGGAAGACAGTGAGAAAACCGGTAAAATAACGTCTGCAGGAATGTATTTCCTGCATTTTCAAGTATACAGAATGGATTCAACTTTGAACGCGTTGGCTATGGCAAAGGATCCAGAAGCTGCTTTTTTTAAGAGGTTGGAAGGTCTTCAACCTTGTGAGGTCTCAGAACTAAAAGCTGGCACTCACATATTCGCTGTATACGGAGATAATTTTTTTAAGACTGCTACCTATACAATTGAGGCACTTTGTGTGGGGTCATATGAGGATACGACACATAAGCTTAGAGATATTGAAGCTCAAATATTAAGAAAGAGAAATGAGCTTCGCCAATTTGAGACCGAGTACAGGAAGGCATTGGCACGCTTTCAAGAAGTGACAAATAGATACACCCAGGAAAAGCAATCTGTAGATGAGCTGCTGAAACAACGAGACAGTATTCATTCATCTTTCACTGTCACTAAGTTAGCCAATAATGCTGTGGGAGGTAGTGGTATAAGCAATGGAAGTAGTAGCAAAACTCCTGGTGAAGATGCTGAAAGCCCAAAGGAGGATGGAGGCTCAGACGGGAAGGACAAGTCCGGTAAAAAGAAATGGTTCAATCTTAACCTCAAAGGATCGGCATCAGATAAAAAGCTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0008092 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

415

Amino Acids

45.6

Weight (kDa)

6.0

Isoelectric Point (pI)

30.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 18 - 80 1e-26 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013340)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68370
fragaria_vesca FvH4_4g27000
malus_domestica MD13G1039100.v1.1 MD16G1040000.v1.1
prunus_persica Prupe.1G314100_v2.0.a1 Prupe.1G314100_v2.0.a1 Prupe.1G314100_v2.0.a1
pyrus_communis pycom13g03360
rosa_chinensis RchiOBHm_Chr4g0434801
rosa_laevigata RLG00000006648
rosa_multiflora Rmu_sc0000179.1_g000002
rosa_roxburghii Rroxscaffold_5G00376010
rosa_rugosa Rorug04G0278500
rosa_samantha Rh4AG335000 Rh4BG343500 Rh4CG357900 Rh4DG337400
rosa_wichuraiana Rw4G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 669, 801
AccII CGCG 2 cut(s) 170, 695
AccIII TCCGGA 2 cut(s) 139, 160
AciI CCGC 4 cut(s) 108, 115, 168, 170
AclWI GGATC 3 cut(s) 707, 720, 1225
AcsI RAATTY 1 cut(s) 548
AdeI CACNNNGTG 1 cut(s) 851
AfaI GTAC 1 cut(s) 947
AfiI CCNNNNNNNGG 3 cut(s) 510, 948, 1150
AflIII ACRYGT 1 cut(s) 693
AgeI ACCGGT 1 cut(s) 623
AjnI CCWGG 3 cut(s) 93, 993, 1123
Alw26I GTCTC 3 cut(s) 769, 932, 1026
AlwI GGATC 3 cut(s) 707, 720, 1225
AlwNI CAGNNNCTG 2 cut(s) 377, 722
Ama87I CYCGRG 1 cut(s) 7
Aor13HI TCCGGA 2 cut(s) 139, 160
AoxI GGCC 1 cut(s) 597
ApeKI GCWGC 3 cut(s) 326, 722, 1018
ApoI RAATTY 1 cut(s) 548
AsiGI ACCGGT 1 cut(s) 623
Asp700I GAANNNNTTC 3 cut(s) 679, 747, 1196
AsuC2I CCSGG 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 1139
AsuII TTCGAA 1 cut(s) 14
AvaI CYCGRG 1 cut(s) 7
BaeGI GKGCMC 1 cut(s) 469
BamHI GGATCC 1 cut(s) 712
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 2 cut(s) 615, 740
BbvCI CCTCAGC 1 cut(s) 267
BbvI GCAGC 3 cut(s) 338, 709, 1005
BccI CCATC 1 cut(s) 1148
BceAI ACGGC 1 cut(s) 62
BciT130I CCWGG 3 cut(s) 95, 995, 1125
BciVI GTATCC 2 cut(s) 581, 862
BcnI CCSGG 1 cut(s) 218
BcoDI GTCTC 3 cut(s) 769, 932, 1026
BfaI CTAG 1 cut(s) 78
BfmI CTRYAG 2 cut(s) 639, 1008
BfuI GTATCC 2 cut(s) 581, 862
BglI GCCNNNNNGGC 1 cut(s) 46
BisI GCNGC 4 cut(s) 168, 327, 723, 1019
BlsI GCNGC 4 cut(s) 169, 328, 724, 1020
Bme1390I CCNGG 4 cut(s) 95, 218, 995, 1125
BmeT110I CYCGRG 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 714
BmrFI CCNGG 4 cut(s) 95, 218, 995, 1125
BmrI ACTGGG 1 cut(s) 419
BmsI GCATC 5 cut(s) 213, 253, 565, 1123, 1232
BmuI ACTGGG 1 cut(s) 419
BpiI GAAGAC 2 cut(s) 615, 740
Bpu10I CCTNAGC 1 cut(s) 267
Bpu14I TTCGAA 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 218
BsaBI GATNNNNATC 1 cut(s) 1222
BsaI GGTCTC 2 cut(s) 769, 932
BsaJI CCNNGG 3 cut(s) 168, 504, 993
BsaWI WCCGGW 4 cut(s) 139, 160, 623, 1181
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 3 cut(s) 510, 948, 1150
Bse118I RCCGGY 1 cut(s) 623
Bse1I ACTGG 1 cut(s) 425
Bse3DI GCAATG 1 cut(s) 1108
Bse8I GATNNNNATC 1 cut(s) 1222
BseAI TCCGGA 2 cut(s) 139, 160
BseBI CCWGG 3 cut(s) 95, 995, 1125
BseDI CCNNGG 3 cut(s) 168, 504, 993
BseGI GGATG 2 cut(s) 136, 1159
BseJI GATNNNNATC 1 cut(s) 1222
BseLI CCNNNNNNNGG 3 cut(s) 510, 948, 1150
BseMI GCAATG 1 cut(s) 1108
BseMII CTCAG 3 cut(s) 258, 780, 1176
BseNI ACTGG 1 cut(s) 425
BseRI GAGGAG 1 cut(s) 241
BseSI GKGCMC 1 cut(s) 469
BseXI GCAGC 3 cut(s) 338, 709, 1005
Bsh1236I CGCG 2 cut(s) 170, 695
BshFI GGCC 1 cut(s) 599
BshTI ACCGGT 1 cut(s) 623
BsiHKCI CYCGRG 1 cut(s) 7
BsiSI CCGG 5 cut(s) 140, 161, 218, 624, 1182
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 3 cut(s) 510, 948, 1150
BsmAI GTCTC 3 cut(s) 769, 932, 1026
BsmFI GGGAC 1 cut(s) 335
BsnI GGCC 1 cut(s) 599
Bso31I GGTCTC 2 cut(s) 769, 932
BsoBI CYCGRG 1 cut(s) 7
Bsp119I TTCGAA 1 cut(s) 14
Bsp1286I GDGCHC 2 cut(s) 8, 469
Bsp13I TCCGGA 2 cut(s) 139, 160
Bsp143I GATC 2 cut(s) 712, 1217
BspACI CCGC 4 cut(s) 108, 115, 168, 170
BspANI GGCC 1 cut(s) 599
BspCNI CTCAG 3 cut(s) 259, 779, 1175
BspEI TCCGGA 2 cut(s) 139, 160
BspFNI CGCG 2 cut(s) 170, 695
BspLI GGNNCC 1 cut(s) 714
BspMAI CTGCAG 1 cut(s) 643
BspPI GGATC 3 cut(s) 707, 720, 1225
BspT104I TTCGAA 1 cut(s) 14
BspTNI GGTCTC 2 cut(s) 769, 932
BsrDI GCAATG 1 cut(s) 1108
BsrFI RCCGGY 1 cut(s) 623
BsrI ACTGG 1 cut(s) 425
BssAI RCCGGY 1 cut(s) 623
BssECI CCNNGG 3 cut(s) 168, 504, 993
BssMI GATC 2 cut(s) 712, 1217
BssNAI GTATAC 2 cut(s) 670, 802
Bst1107I GTATAC 2 cut(s) 670, 802
Bst2UI CCWGG 3 cut(s) 95, 995, 1125
Bst4CI ACNGT 8 cut(s) 177, 310, 379, 412, 593, 614, 1037, 1057
Bst6I CTCTTC 1 cut(s) 218
BstBI TTCGAA 1 cut(s) 14
BstC8I GCNNGC 2 cut(s) 781, 964
BstDEI CTNAG 5 cut(s) 267, 766, 884, 1062, 1162
BstDSI CCRYGG 1 cut(s) 168
BstF5I GGATG 2 cut(s) 136, 1159
BstFNI CGCG 2 cut(s) 170, 695
BstKTI GATC 2 cut(s) 715, 1220
BstMAI GTCTC 3 cut(s) 769, 932, 1026
BstMBI GATC 2 cut(s) 712, 1217
BstMWI GCNNNNNNNGC 3 cut(s) 46, 263, 1076
BstNI CCWGG 3 cut(s) 95, 995, 1125
BstSCI CCNGG 4 cut(s) 93, 216, 993, 1123
BstSFI CTRYAG 2 cut(s) 639, 1008
BstSLI GKGCMC 1 cut(s) 469
BstUI CGCG 2 cut(s) 170, 695
BstV1I GCAGC 3 cut(s) 338, 709, 1005
BstV2I GAAGAC 2 cut(s) 615, 740
BstX2I RGATCY 1 cut(s) 712
BstXI CCANNNNNNTGG 1 cut(s) 476
BstYI RGATCY 1 cut(s) 712
BstZ17I GTATAC 2 cut(s) 670, 802
BsuI GTATCC 2 cut(s) 581, 862
BsuRI GGCC 1 cut(s) 599
BtgI CCRYGG 1 cut(s) 168
BtsCI GGATG 2 cut(s) 136, 1159
BtsIMutI CAGTG 3 cut(s) 496, 619, 1053
Cac8I GCNNGC 2 cut(s) 781, 964
CaiI CAGNNNCTG 2 cut(s) 377, 722
Cfr10I RCCGGY 1 cut(s) 623
Cfr42I CCGCGG 1 cut(s) 171
Csp6I GTAC 1 cut(s) 946
CspAI ACCGGT 1 cut(s) 623
CviAII CATG 2 cut(s) 274, 280
CviQI GTAC 1 cut(s) 946
DdeI CTNAG 5 cut(s) 267, 766, 884, 1062, 1162
DpnI GATC 2 cut(s) 714, 1219
DpnII GATC 2 cut(s) 712, 1217
DraIII CACNNNGTG 1 cut(s) 851
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 2 cut(s) 769, 932
Eco88I CYCGRG 1 cut(s) 7
EcoRII CCWGG 3 cut(s) 93, 993, 1123
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 2 cut(s) 277, 283
FalI AAGNNNNNCTT 2 cut(s) 514, 546
FaqI GGGAC 1 cut(s) 335
FatI CATG 2 cut(s) 273, 279
FauNDI CATATG 1 cut(s) 862
FblI GTMKAC 2 cut(s) 669, 801
Fnu4HI GCNGC 4 cut(s) 168, 327, 723, 1019
FokI GGATG 2 cut(s) 123, 1166
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 4 cut(s) 168, 327, 723, 1019
FspBI CTAG 1 cut(s) 78
GluI GCNGC 4 cut(s) 168, 327, 723, 1019
HaeIII GGCC 1 cut(s) 599
HapII CCGG 5 cut(s) 140, 161, 218, 624, 1182
Hin1II CATG 2 cut(s) 277, 283
HindIII AAGCTT 2 cut(s) 881, 1235
HinfI GANTC 2 cut(s) 83, 680
HpaII CCGG 5 cut(s) 140, 161, 218, 624, 1182
HphI GGTGA 1 cut(s) 1139
Hpy166II GTNNAC 2 cut(s) 670, 802
Hpy188I TCNGA 5 cut(s) 91, 214, 769, 1165, 1228
Hpy188III TCNNGA 5 cut(s) 140, 161, 358, 716, 971
Hpy8I GTNNAC 2 cut(s) 670, 802
HpyAV CCTTC 4 cut(s) 17, 737, 946, 1165
HpyCH4III ACNGT 8 cut(s) 177, 310, 379, 412, 593, 614, 1037, 1057
HpyCH4IV ACGT 1 cut(s) 635
HpyCH4V TGCA 3 cut(s) 326, 641, 658
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 263, 1076
HpyF3I CTNAG 5 cut(s) 267, 766, 884, 1062, 1162
HpySE526I ACGT 1 cut(s) 635
Hsp92II CATG 2 cut(s) 277, 283
Kpn2I TCCGGA 2 cut(s) 139, 160
KspI CCGCGG 1 cut(s) 171
Kzo9I GATC 2 cut(s) 712, 1217
Lsp1109I GCAGC 3 cut(s) 338, 709, 1005
LweI GCATC 5 cut(s) 213, 253, 565, 1123, 1232
MaeI CTAG 1 cut(s) 78
MaeII ACGT 1 cut(s) 635
MaeIII GTNAC 6 cut(s) 50, 406, 481, 526, 976, 1057
MalI GATC 2 cut(s) 714, 1219
MboI GATC 2 cut(s) 712, 1217
MboII GAAGA 5 cut(s) 235, 398, 620, 740, 1142
MfeI CAATTG 1 cut(s) 837
MflI RGATCY 1 cut(s) 712
MhlI GDGCHC 2 cut(s) 8, 469
MluCI AATT 5 cut(s) 17, 548, 811, 837, 932
MluI ACGCGT 1 cut(s) 693
MmeI TCCRAC 2 cut(s) 409, 720
MroI TCCGGA 2 cut(s) 139, 160
MroXI GAANNNNTTC 3 cut(s) 679, 747, 1196
MseI TTAA 5 cut(s) 552, 732, 819, 908, 1206
MslI CAYNNNNRTG 1 cut(s) 278
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 5 cut(s) 140, 161, 218, 624, 1182
MspR9I CCNGG 4 cut(s) 95, 218, 995, 1125
MunI CAATTG 1 cut(s) 837
MvaI CCWGG 3 cut(s) 95, 995, 1125
MvnI CGCG 2 cut(s) 170, 695
MwoI GCNNNNNNNGC 3 cut(s) 46, 263, 1076
NciI CCSGG 1 cut(s) 218
NdeI CATATG 1 cut(s) 862
NdeII GATC 2 cut(s) 712, 1217
NlaIII CATG 2 cut(s) 277, 283
NlaIV GGNNCC 1 cut(s) 714
NmeAIII GCCGAG 1 cut(s) 529
NmuCI GTSAC 3 cut(s) 50, 976, 1057
NspV TTCGAA 1 cut(s) 14
PdmI GAANNNNTTC 3 cut(s) 679, 747, 1196
PfeI GAWTC 2 cut(s) 83, 680
PinAI ACCGGT 1 cut(s) 623
PkrI GCNGC 4 cut(s) 169, 328, 724, 1020
Psp6I CCWGG 3 cut(s) 93, 993, 1123
PspGI CCWGG 3 cut(s) 93, 993, 1123
PspN4I GGNNCC 1 cut(s) 714
PsrI GAACNNNNNNTAC 2 cut(s) 298, 330
PstI CTGCAG 1 cut(s) 643
PstNI CAGNNNCTG 2 cut(s) 377, 722
PsuI RGATCY 1 cut(s) 712
RsaI GTAC 1 cut(s) 947
RsaNI GTAC 1 cut(s) 946
RseI CAYNNNNRTG 1 cut(s) 278
SacII CCGCGG 1 cut(s) 171
SaqAI TTAA 5 cut(s) 552, 732, 819, 908, 1206
SatI GCNGC 4 cut(s) 168, 327, 723, 1019
Sau3AI GATC 2 cut(s) 712, 1217
ScrFI CCNGG 4 cut(s) 95, 218, 995, 1125
SduI GDGCHC 2 cut(s) 8, 469
SfaNI GCATC 5 cut(s) 213, 253, 565, 1123, 1232
SfcI CTRYAG 2 cut(s) 639, 1008
Sfr303I CCGCGG 1 cut(s) 171
SfuI TTCGAA 1 cut(s) 14
SgrBI CCGCGG 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 5 cut(s) 17, 548, 811, 837, 932
SsiI CCGC 4 cut(s) 108, 115, 168, 170
SspI AATATT 1 cut(s) 906
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 4 cut(s) 93, 216, 993, 1123
TaaI ACNGT 8 cut(s) 177, 310, 379, 412, 593, 614, 1037, 1057
TaiI ACGT 1 cut(s) 638
TaqI TCGA 2 cut(s) 14, 288
TaqII GACCGA 1 cut(s) 956
TasI AATT 5 cut(s) 17, 548, 811, 837, 932
TatI WGTACW 1 cut(s) 945
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 2 cut(s) 83, 680
Tru1I TTAA 5 cut(s) 552, 732, 819, 908, 1206
Tru9I TTAA 5 cut(s) 552, 732, 819, 908, 1206
TscAI CASTG 3 cut(s) 496, 619, 1060
TseFI GTSAC 3 cut(s) 50, 976, 1057
TseI GCWGC 3 cut(s) 326, 722, 1018
Tsp45I GTSAC 3 cut(s) 50, 976, 1057
TspDTI ATGAA 4 cut(s) 75, 125, 1031, 1035
TspGWI ACGGA 1 cut(s) 819
TspRI CASTG 3 cut(s) 496, 619, 1060
XapI RAATTY 1 cut(s) 548
XcmI CCANNNNNNNNNTGG 1 cut(s) 1078
XmiI GTMKAC 2 cut(s) 669, 801
XmnI GAANNNNTTC 3 cut(s) 679, 747, 1196
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.