Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012609

Physical Location & Seq

Genomic Coordinates Reverse (-)

30393109 .. 30397766

Gene Structure 4658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G314100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGGGACGGGTTCGAAATTGGAAGGGACATCGGCACCGGCAACAAGGCGAGACCCCTACGAGGTTTTGTGCGTTTCGAGGGATTCAAATGATCAGGAAATTAAAACCGCCTATAGAAAGCTTGCTCTCAAGTATCATCCAGACAAGAATGCCAGCAATCCTGAAGCTTCAGAGCATTTCAAGGAGGTTGCATTTTCTTATAGTATCTTGTCTGACCCCGAGAAGAGGAGGCAGTATGACAATGCAGGGTTTGAGGCAATTGATGCTGATGCCATGGACATGGAAATTGACTTGTCAAATCTGGGAACTGTCAATACAATGTTTGCCGCTTTATTCAGCAAGTTGGGTGTGCCTATCAAGACTACAATTTCCGCTAATGTACTTGAAGAAGCTCTTAGTGGTACAGTAACAGTCAGACCTCTCCCAATTGGGACATCAGTTAGTGGAAAGGTGGAGAAACAGTGTGCCCACTTTTTTGGTGTTACAATCAATGAGCAGCAAGCCGAGTCGGGGATTGTAGTAAGAGTAACTTCAACTGCACAAAGCAAATTTAAGTTACTTTATTTTGAACAAGATGCCAATGGCGGTTATGGTTTGGCCTTACAGGAAGATAGTGAGAAGACGGGCAAAGCAACATCTGCAGGGATGTATTTTCTGCATTTTCAAGTATATAGAATGGATTCAACTTTGAATGCGTTGGCCATGGCAAAGGACCCTGAAGCTGCTTTTTTCAAGAGGTTGGAAGGTCTTCAACCTTGTGAGGTCTCAGAACTAAAAGCTGGCACTCATATATTCGCTGTTTATGGAGATAATTTTTTTAAGACTGCTACCTATACAATCGAGGCACTTTGTGTAAAATCATATGAGGATACGACGCAGAAGCTTAAAGAGATTGAGGGTCAGATTTTAAGAAAGAGAAATGAGCTTCGCCAATTTGAAACAGAGTACAGGAAGGCATTGGCGCGCTTTCAAGAAGTGACCAACAGATACACCCAGGAAAAGCTATCTGTGGATGAGCTGCTGAAACAGCGAGACAGTATCCATTCTTCTTTCACTATCACCAAGACAATCAATAATAGTGTGGGTGGTAGCGGTGTGAGTAATGGTAGCAGCAGCAAAAATCCTGGCGAAGATTCAAATGCTGAGAGCCCAGGGGAAGATGGAGGCTCTGACGGGAAGGACAAGTCAGGCAAAAAGAAATGGTTCAATCTTAACCTCAAAGGATCAGATAAAAAACTTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008092 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

415

Amino Acids

45.6

Weight (kDa)

6.0

Isoelectric Point (pI)

29.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012609)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g27001 FvH4_4g27001
prunus_persica	Prupe.1G314100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0434811
rosa_laevigata	RLG00000006646
rosa_multiflora	Rmu_co8406493.1_g000001 Rmu_sc0000179.1_g000003
rosa_rugosa	Rorug04G0278600 Rorug04G0278700 Rorug04G0278800 Rorug04G0278900 Rorug04G0279000 Rorug04G0279100 Rorug04G0279200
rosa_samantha	Rh4AG335100 Rh4BG343600 Rh4CG358000 Rh4DG337500
rosa_wichuraiana	Rw4G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	34
AccII	CGCG	1 cut(s)	964
AciI	CCGC	5 cut(s)	108, 327, 372, 585, 1092
AclWI	GGATC	1 cut(s)	1231
AcoI	YGGCCR	1 cut(s)	699
AcsI	RAATTY	1 cut(s)	548
AcuI	CTGAAG	3 cut(s)	153, 183, 738
AdeI	CACNNNGTG	1 cut(s)	851
AfaI	GTAC	3 cut(s)	381, 403, 947
AfiI	CCNNNNNNNGG	3 cut(s)	61, 225, 510
AjnI	CCWGG	3 cut(s)	993, 1123, 1150
AluBI	AGCT	9 cut(s)	121, 167, 392, 722, 779, 883, 925, 1003, 1018
AluI	AGCT	9 cut(s)	121, 167, 392, 722, 779, 883, 925, 1003, 1018
Alw26I	GTCTC	3 cut(s)	45, 769, 1026
AlwI	GGATC	1 cut(s)	1231
Ama87I	CYCGRG	1 cut(s)	218
AoxI	GGCC	2 cut(s)	597, 699
ApeKI	GCWGC	5 cut(s)	496, 722, 1018, 1110, 1113
ApoI	RAATTY	1 cut(s)	548
Asp700I	GAANNNNTTC	3 cut(s)	679, 747, 1202
AspLEI	GCGC	2 cut(s)	964, 966
AspS9I	GGNCC	1 cut(s)	712
AsuHPI	GGTGA	1 cut(s)	1051
AsuII	TTCGAA	1 cut(s)	14
AvaI	CYCGRG	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	712
BaeGI	GKGCMC	1 cut(s)	469
BalI	TGGCCA	1 cut(s)	701
BanI	GGYRCC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	1151
BarI	GAAGNNNNNNTAC	2 cut(s)	1030, 1062
BbsI	GAAGAC	2 cut(s)	626, 740
BbvI	GCAGC	5 cut(s)	508, 709, 1005, 1122, 1125
BccI	CCATC	1 cut(s)	1154
BciT130I	CCWGG	3 cut(s)	995, 1125, 1152
BciVI	GTATCC	2 cut(s)	862, 1049
BclI	TGATCA	1 cut(s)	91
BcoDI	GTCTC	3 cut(s)	45, 769, 1026
BfmI	CTRYAG	2 cut(s)	112, 639
BfuI	GTATCC	2 cut(s)	862, 1049
BisI	GCNGC	6 cut(s)	327, 497, 723, 1019, 1111, 1114
BlsI	GCNGC	6 cut(s)	328, 498, 724, 1020, 1112, 1115
Bme1390I	CCNGG	3 cut(s)	995, 1125, 1152
Bme18I	GGWCC	1 cut(s)	712
BmeT110I	CYCGRG	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	712
BmiI	GGNNCC	2 cut(s)	36, 714
BmrFI	CCNGG	3 cut(s)	995, 1125, 1152
BmsI	GCATC	3 cut(s)	253, 259, 565
BpiI	GAAGAC	2 cut(s)	626, 740
Bpu14I	TTCGAA	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	113
BsaI	GGTCTC	2 cut(s)	45, 769
BsaJI	CCNNGG	5 cut(s)	273, 702, 993, 1150, 1151
BsaXI	ACNNNNNCTCC	2 cut(s)	446, 476
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 225, 510
Bse118I	RCCGGY	1 cut(s)	37
BseBI	CCWGG	3 cut(s)	995, 1125, 1152
BseDI	CCNNGG	5 cut(s)	273, 702, 993, 1150, 1151
BseGI	GGATG	3 cut(s)	136, 651, 1018
BseLI	CCNNNNNNNGG	3 cut(s)	61, 225, 510
BseMII	CTCAG	2 cut(s)	780, 1134
BsePI	GCGCGC	1 cut(s)	962
BseRI	GAGGAG	1 cut(s)	241
BseSI	GKGCMC	1 cut(s)	469
BseXI	GCAGC	5 cut(s)	508, 709, 1005, 1122, 1125
BsgI	GTGCAG	1 cut(s)	522
Bsh1236I	CGCG	1 cut(s)	964
BshFI	GGCC	2 cut(s)	599, 701
BshNI	GGYRCC	1 cut(s)	34
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	1 cut(s)	38
BslFI	GGGAC	3 cut(s)	19, 40, 445
BslI	CCNNNNNNNGG	3 cut(s)	61, 225, 510
BsmAI	GTCTC	3 cut(s)	45, 769, 1026
BsmFI	GGGAC	3 cut(s)	19, 40, 445
BsmI	GAATGC	2 cut(s)	154, 697
BsnI	GGCC	2 cut(s)	599, 701
Bso31I	GGTCTC	2 cut(s)	45, 769
BsoBI	CYCGRG	1 cut(s)	218
Bsp119I	TTCGAA	1 cut(s)	14
Bsp1286I	GDGCHC	2 cut(s)	469, 1151
Bsp143I	GATC	2 cut(s)	91, 1223
Bsp19I	CCATGG	2 cut(s)	273, 702
BspACI	CCGC	5 cut(s)	108, 327, 372, 585, 1092
BspANI	GGCC	2 cut(s)	599, 701
BspCNI	CTCAG	2 cut(s)	779, 1135
BspFNI	CGCG	1 cut(s)	964
BspLI	GGNNCC	2 cut(s)	36, 714
BspMAI	CTGCAG	1 cut(s)	643
BspPI	GGATC	1 cut(s)	1231
BspT104I	TTCGAA	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	34
BspTNI	GGTCTC	2 cut(s)	45, 769
BsrFI	RCCGGY	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	5 cut(s)	273, 702, 993, 1150, 1151
BssHII	GCGCGC	1 cut(s)	962
BssMI	GATC	2 cut(s)	91, 1223
BssT1I	CCWWGG	2 cut(s)	273, 702
Bst2UI	CCWGG	3 cut(s)	995, 1125, 1152
Bst4CI	ACNGT	5 cut(s)	310, 406, 412, 462, 1037
Bst6I	CTCTTC	1 cut(s)	218
BstAPI	GCANNNNNTGC	2 cut(s)	263, 638
BstBI	TTCGAA	1 cut(s)	14
BstC8I	GCNNGC	5 cut(s)	123, 154, 501, 781, 964
BstDEI	CTNAG	3 cut(s)	395, 766, 1143
BstDSI	CCRYGG	2 cut(s)	273, 702
BstF5I	GGATG	3 cut(s)	136, 651, 1018
BstFNI	CGCG	1 cut(s)	964
BstHHI	GCGC	2 cut(s)	964, 966
BstKTI	GATC	2 cut(s)	94, 1226
BstMAI	GTCTC	3 cut(s)	45, 769, 1026
BstMBI	GATC	2 cut(s)	91, 1223
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 638, 1027
BstNI	CCWGG	3 cut(s)	995, 1125, 1152
BstSCI	CCNGG	3 cut(s)	993, 1123, 1150
BstSFI	CTRYAG	2 cut(s)	112, 639
BstSLI	GKGCMC	1 cut(s)	469
BstUI	CGCG	1 cut(s)	964
BstV1I	GCAGC	5 cut(s)	508, 709, 1005, 1122, 1125
BstV2I	GAAGAC	2 cut(s)	626, 740
BstXI	CCANNNNNNTGG	2 cut(s)	280, 476
BsuI	GTATCC	2 cut(s)	862, 1049
BsuRI	GGCC	2 cut(s)	599, 701
BtgI	CCRYGG	2 cut(s)	273, 702
BtsCI	GGATG	3 cut(s)	136, 651, 1018
BtsIMutI	CAGTG	1 cut(s)	467
Cac8I	GCNNGC	5 cut(s)	123, 154, 501, 781, 964
CfoI	GCGC	2 cut(s)	964, 966
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	712
CseI	GACGC	1 cut(s)	883
Csp6I	GTAC	3 cut(s)	380, 402, 946
CviAII	CATG	3 cut(s)	274, 280, 703
CviQI	GTAC	3 cut(s)	380, 402, 946
DdeI	CTNAG	3 cut(s)	395, 766, 1143
DpnI	GATC	2 cut(s)	93, 1225
DpnII	GATC	2 cut(s)	91, 1223
DraIII	CACNNNGTG	1 cut(s)	851
EaeI	YGGCCR	1 cut(s)	699
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco130I	CCWWGG	2 cut(s)	273, 702
Eco24I	GRGCYC	1 cut(s)	1151
Eco31I	GGTCTC	2 cut(s)	45, 769
Eco47I	GGWCC	1 cut(s)	712
Eco57I	CTGAAG	3 cut(s)	153, 183, 738
Eco88I	CYCGRG	1 cut(s)	218
EcoO109I	RGGNCCY	1 cut(s)	712
EcoRII	CCWGG	3 cut(s)	993, 1123, 1150
EcoT14I	CCWWGG	2 cut(s)	273, 702
EcoT38I	GRGCYC	1 cut(s)	1151
ErhI	CCWWGG	2 cut(s)	273, 702
FaeI	CATG	3 cut(s)	277, 283, 706
FalI	AAGNNNNNCTT	4 cut(s)	378, 410, 514, 546
FaqI	GGGAC	3 cut(s)	19, 40, 445
FatI	CATG	3 cut(s)	273, 279, 702
FauNDI	CATATG	1 cut(s)	862
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	6 cut(s)	327, 497, 723, 1019, 1111, 1114
FokI	GGATG	3 cut(s)	123, 658, 1025
FriOI	GRGCYC	1 cut(s)	1151
Fsp4HI	GCNGC	6 cut(s)	327, 497, 723, 1019, 1111, 1114
GlaI	GCGC	2 cut(s)	963, 965
GluI	GCNGC	6 cut(s)	327, 497, 723, 1019, 1111, 1114
HaeIII	GGCC	2 cut(s)	599, 701
HapII	CCGG	1 cut(s)	38
HgaI	GACGC	1 cut(s)	883
HhaI	GCGC	2 cut(s)	964, 966
Hin1II	CATG	3 cut(s)	277, 283, 706
Hin6I	GCGC	2 cut(s)	962, 964
HinP1I	GCGC	2 cut(s)	962, 964
HindIII	AAGCTT	3 cut(s)	119, 165, 881
HinfI	GANTC	4 cut(s)	83, 506, 680, 1133
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	1 cut(s)	1051
Hpy188I	TCNGA	7 cut(s)	172, 214, 416, 769, 903, 1171, 1228
Hpy188III	TCNNGA	6 cut(s)	95, 140, 161, 358, 733, 971
Hpy99I	CGWCG	1 cut(s)	877
HpyAV	CCTTC	4 cut(s)	17, 737, 946, 1171
HpyCH4III	ACNGT	5 cut(s)	310, 406, 412, 462, 1037
HpyCH4V	TGCA	5 cut(s)	191, 245, 539, 641, 658
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 638, 1027
HpyF3I	CTNAG	3 cut(s)	395, 766, 1143
Hsp92II	CATG	3 cut(s)	277, 283, 706
HspAI	GCGC	2 cut(s)	962, 964
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	91, 1223
Lsp1109I	GCAGC	5 cut(s)	508, 709, 1005, 1122, 1125
LweI	GCATC	3 cut(s)	253, 259, 565
MaeIII	GTNAC	5 cut(s)	406, 481, 526, 555, 976
MalI	GATC	2 cut(s)	93, 1225
MboI	GATC	2 cut(s)	91, 1223
MboII	GAAGA	8 cut(s)	235, 398, 620, 631, 740, 1038, 1142, 1169
MfeI	CAATTG	2 cut(s)	258, 426
MhlI	GDGCHC	2 cut(s)	469, 1151
MlsI	TGGCCA	1 cut(s)	701
MluCI	AATT	9 cut(s)	17, 99, 258, 285, 366, 426, 548, 811, 932
MluNI	TGGCCA	1 cut(s)	701
MlyI	GAGTC	1 cut(s)	515
MmeI	TCCRAC	1 cut(s)	720
Mox20I	TGGCCA	1 cut(s)	701
MroXI	GAANNNNTTC	3 cut(s)	679, 747, 1202
MscI	TGGCCA	1 cut(s)	701
MseI	TTAA	6 cut(s)	102, 552, 819, 885, 908, 1212
MslI	CAYNNNNRTG	1 cut(s)	278
Msp20I	TGGCCA	1 cut(s)	701
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	3 cut(s)	995, 1125, 1152
MunI	CAATTG	2 cut(s)	258, 426
Mva1269I	GAATGC	2 cut(s)	154, 697
MvaI	CCWGG	3 cut(s)	995, 1125, 1152
MvnI	CGCG	1 cut(s)	964
MwoI	GCNNNNNNNGC	3 cut(s)	263, 638, 1027
NcoI	CCATGG	2 cut(s)	273, 702
NdeI	CATATG	1 cut(s)	862
NdeII	GATC	2 cut(s)	91, 1223
NlaIII	CATG	3 cut(s)	277, 283, 706
NlaIV	GGNNCC	2 cut(s)	36, 714
NmeAIII	GCCGAG	1 cut(s)	529
NmuCI	GTSAC	1 cut(s)	976
NspV	TTCGAA	1 cut(s)	14
PasI	CCCWGGG	1 cut(s)	1151
PauI	GCGCGC	1 cut(s)	962
PctI	GAATGC	2 cut(s)	154, 697
PdmI	GAANNNNTTC	3 cut(s)	679, 747, 1202
PfeI	GAWTC	3 cut(s)	83, 680, 1133
PkrI	GCNGC	6 cut(s)	328, 498, 724, 1020, 1112, 1115
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
PpuMI	RGGWCCY	1 cut(s)	712
Psp5II	RGGWCCY	1 cut(s)	712
Psp6I	CCWGG	3 cut(s)	993, 1123, 1150
PspGI	CCWGG	3 cut(s)	993, 1123, 1150
PspN4I	GGNNCC	2 cut(s)	36, 714
PspPI	GGNCC	1 cut(s)	712
PspPPI	RGGWCCY	1 cut(s)	712
PsrI	GAACNNNNNNTAC	2 cut(s)	298, 330
PstI	CTGCAG	1 cut(s)	643
PteI	GCGCGC	1 cut(s)	962
RsaI	GTAC	3 cut(s)	381, 403, 947
RsaNI	GTAC	3 cut(s)	380, 402, 946
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	6 cut(s)	102, 552, 819, 885, 908, 1212
SatI	GCNGC	6 cut(s)	327, 497, 723, 1019, 1111, 1114
Sau3AI	GATC	2 cut(s)	91, 1223
Sau96I	GGNCC	1 cut(s)	712
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	3 cut(s)	995, 1125, 1152
SduI	GDGCHC	2 cut(s)	469, 1151
SfaNI	GCATC	3 cut(s)	253, 259, 565
SfcI	CTRYAG	2 cut(s)	112, 639
SfuI	TTCGAA	1 cut(s)	14
SinI	GGWCC	1 cut(s)	712
SmiMI	CAYNNNNRTG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	9 cut(s)	17, 99, 258, 285, 366, 426, 548, 811, 932
SsiI	CCGC	5 cut(s)	108, 327, 372, 585, 1092
StyD4I	CCNGG	3 cut(s)	993, 1123, 1150
StyI	CCWWGG	2 cut(s)	273, 702
TaaI	ACNGT	5 cut(s)	310, 406, 412, 462, 1037
TaqI	TCGA	3 cut(s)	14, 77, 840
TasI	AATT	9 cut(s)	17, 99, 258, 285, 366, 426, 548, 811, 932
TatI	WGTACW	2 cut(s)	379, 945
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	3 cut(s)	83, 680, 1133
Tru1I	TTAA	6 cut(s)	102, 552, 819, 885, 908, 1212
Tru9I	TTAA	6 cut(s)	102, 552, 819, 885, 908, 1212
TscAI	CASTG	1 cut(s)	467
TseFI	GTSAC	1 cut(s)	976
TseI	GCWGC	5 cut(s)	496, 722, 1018, 1110, 1113
Tsp45I	GTSAC	1 cut(s)	976
TspRI	CASTG	1 cut(s)	467
VpaK11BI	GGWCC	1 cut(s)	712
XapI	RAATTY	1 cut(s)	548
XmnI	GAANNNNTTC	3 cut(s)	679, 747, 1202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.