Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0012609

Physical Location & Seq

Genomic Coordinates Forward (+)

56021475 .. 56022727

Gene Structure 1253 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG337500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAAGACCGATGATATGGCTATTGATGCTGAACGCAAGGATATAGAAGTTGATTTGTCGAAATTAGGAGCTGTCCATACAATGTTTGCAGCTTTATTCTGCAAATTGGTTGCTCCTATAAAGACTATAATTTCCCGCAATGTACTCGAAGAAACTCAGGATGGTAATGCTGCCGTTAGACCTCTCCCACTTGGAACATCAGTTAGTGGAAAGGTGAAGAAACAATGTGCCCACTATTTTGGTGTAACCATAAATGAGCAACAAGCCAAGTTGGGGATTGTGGTGCGAGTTACTTCGTTTGGAAGAAATAGATTTAAGTTGCTTTATCTTGAGCAAGATGCCAATAATGCTGCTTATCACTTGGTCTCACAGGAAGATAGTAAGATGATATGCAATGTACCATCTGCAGGGATGTATTTTTTGCATTTTCAAGTATATAGAATGGATTCAACTTTGAACGCGGCTCCAGCTGCATTTTTTAAAAGTTTGGAAGGTGTTCACCCTTGTGAGGTCTCACAACTAAAAGCTGGTACTCATATATTCGCTGTTTATGGTACGAACAACTTTAATTTGAGTTCCTCCATGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008092 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

196

Amino Acids

21.57

Weight (kDa)

8.32

Isoelectric Point (pI)

29.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012609)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g27001 FvH4_4g27001
prunus_persica	Prupe.1G314100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0434811
rosa_laevigata	RLG00000006646
rosa_multiflora	Rmu_co8406493.1_g000001 Rmu_sc0000179.1_g000003
rosa_rugosa	Rorug04G0278600 Rorug04G0278700 Rorug04G0278800 Rorug04G0278900 Rorug04G0279000 Rorug04G0279100 Rorug04G0279200
rosa_samantha	Rh4AG335100 Rh4BG343600 Rh4CG358000 Rh4DG337500
rosa_wichuraiana	Rw4G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	461
AciI	CCGC	2 cut(s)	136, 461
AfaI	GTAC	4 cut(s)	144, 399, 532, 556
AfiI	CCNNNNNNNGG	3 cut(s)	273, 407, 508
AgsI	TTSAA	3 cut(s)	431, 450, 457
AleI	CACNNNNGTG	1 cut(s)	504
AluBI	AGCT	4 cut(s)	71, 92, 470, 527
AluI	AGCT	4 cut(s)	71, 92, 470, 527
Alw26I	GTCTC	2 cut(s)	370, 517
ApeKI	GCWGC	4 cut(s)	89, 170, 350, 470
Asp700I	GAANNNNTTC	2 cut(s)	445, 495
AsuHPI	GGTGA	2 cut(s)	226, 491
BaeGI	GKGCMC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	4 cut(s)	101, 157, 337, 457
BccI	CCATC	2 cut(s)	155, 409
BceAI	ACGGC	1 cut(s)	158
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BcoDI	GTCTC	2 cut(s)	370, 517
BfmI	CTRYAG	1 cut(s)	405
BisI	GCNGC	5 cut(s)	90, 171, 351, 462, 471
BlsI	GCNGC	5 cut(s)	91, 172, 352, 463, 472
BmiI	GGNNCC	1 cut(s)	465
BmsI	GCATC	2 cut(s)	16, 328
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	350
BsaI	GGTCTC	2 cut(s)	370, 517
BsaJI	CCNNGG	1 cut(s)	582
Bsc4I	CCNNNNNNNGG	3 cut(s)	273, 407, 508
Bse3DI	GCAATG	2 cut(s)	145, 400
BseDI	CCNNGG	1 cut(s)	582
BseGI	GGATG	2 cut(s)	166, 417
BseLI	CCNNNNNNNGG	3 cut(s)	273, 407, 508
BseMI	GCAATG	2 cut(s)	145, 400
BseMII	CTCAG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	232
BseXI	GCAGC	4 cut(s)	101, 157, 337, 457
Bsh1236I	CGCG	1 cut(s)	461
BslI	CCNNNNNNNGG	3 cut(s)	273, 407, 508
BsmAI	GTCTC	2 cut(s)	370, 517
Bso31I	GGTCTC	2 cut(s)	370, 517
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp19I	CCATGG	1 cut(s)	582
BspACI	CCGC	2 cut(s)	136, 461
BspCNI	CTCAG	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	461
BspLI	GGNNCC	1 cut(s)	465
BspMAI	CTGCAG	1 cut(s)	409
BspTNI	GGTCTC	2 cut(s)	370, 517
BsrDI	GCAATG	2 cut(s)	145, 400
BssECI	CCNNGG	1 cut(s)	582
BssT1I	CCWWGG	1 cut(s)	582
BstDEI	CTNAG	1 cut(s)	156
BstDSI	CCRYGG	1 cut(s)	582
BstF5I	GGATG	2 cut(s)	166, 417
BstFNI	CGCG	1 cut(s)	461
BstMAI	GTCTC	2 cut(s)	370, 517
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 347, 467, 470
BstSFI	CTRYAG	1 cut(s)	405
BstSLI	GKGCMC	1 cut(s)	232
BstUI	CGCG	1 cut(s)	461
BstV1I	GCAGC	4 cut(s)	101, 157, 337, 457
BstV2I	GAAGAC	1 cut(s)	11
BstXI	CCANNNNNNTGG	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	582
BtsCI	GGATG	2 cut(s)	166, 417
Csp6I	GTAC	4 cut(s)	143, 398, 531, 555
CviAII	CATG	1 cut(s)	583
CviJI	RGCY	7 cut(s)	20, 71, 92, 266, 464, 470, 527
CviKI_1	RGCY	7 cut(s)	20, 71, 92, 266, 464, 470, 527
CviQI	GTAC	4 cut(s)	143, 398, 531, 555
DdeI	CTNAG	1 cut(s)	156
DraI	TTTAAA	1 cut(s)	481
Eco130I	CCWWGG	1 cut(s)	582
Eco31I	GGTCTC	2 cut(s)	370, 517
EcoT14I	CCWWGG	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	582
FaeI	CATG	1 cut(s)	586
FatI	CATG	1 cut(s)	582
FauI	CCCGC	1 cut(s)	143
Fnu4HI	GCNGC	5 cut(s)	90, 171, 351, 462, 471
FokI	GGATG	2 cut(s)	173, 424
Fsp4HI	GCNGC	5 cut(s)	90, 171, 351, 462, 471
GluI	GCNGC	5 cut(s)	90, 171, 351, 462, 471
GsuI	CTGGAG	1 cut(s)	450
Hin1II	CATG	1 cut(s)	586
HinfI	GANTC	1 cut(s)	446
HphI	GGTGA	2 cut(s)	226, 491
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188III	TCNNGA	2 cut(s)	158, 329
Hpy8I	GTNNAC	1 cut(s)	499
HpyAV	CCTTC	1 cut(s)	485
HpyCH4V	TGCA	6 cut(s)	89, 102, 393, 407, 424, 473
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 347, 467, 470
HpyF3I	CTNAG	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	586
LmnI	GCTCC	3 cut(s)	68, 118, 469
LpnPI	CCDG	5 cut(s)	143, 356, 393, 480, 513
Lsp1109I	GCAGC	4 cut(s)	101, 157, 337, 457
LweI	GCATC	2 cut(s)	16, 328
MaeIII	GTNAC	2 cut(s)	244, 289
MboII	GAAGA	5 cut(s)	16, 161, 229, 315, 386
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	4 cut(s)	62, 104, 129, 568
MnlI	CCTC	3 cut(s)	192, 502, 589
MroXI	GAANNNNTTC	2 cut(s)	445, 495
MseI	TTAA	3 cut(s)	315, 480, 567
MslI	CAYNNNNRTG	1 cut(s)	504
MspA1I	CMGCKG	1 cut(s)	470
MvnI	CGCG	1 cut(s)	461
MwoI	GCNNNNNNNGC	4 cut(s)	26, 347, 467, 470
NcoI	CCATGG	1 cut(s)	582
NlaIII	CATG	1 cut(s)	586
NlaIV	GGNNCC	1 cut(s)	465
OliI	CACNNNNGTG	1 cut(s)	504
PdmI	GAANNNNTTC	2 cut(s)	445, 495
PfeI	GAWTC	1 cut(s)	446
PkrI	GCNGC	5 cut(s)	91, 172, 352, 463, 472
PspN4I	GGNNCC	1 cut(s)	465
PstI	CTGCAG	1 cut(s)	409
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	4 cut(s)	144, 399, 532, 556
RsaNI	GTAC	4 cut(s)	143, 398, 531, 555
RseI	CAYNNNNRTG	1 cut(s)	504
SaqAI	TTAA	3 cut(s)	315, 480, 567
SatI	GCNGC	5 cut(s)	90, 171, 351, 462, 471
SduI	GDGCHC	1 cut(s)	232
SetI	ASST	8 cut(s)	73, 94, 184, 216, 472, 496, 513, 529
SfaNI	GCATC	2 cut(s)	16, 328
SfcI	CTRYAG	1 cut(s)	405
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	4 cut(s)	62, 104, 129, 568
SsiI	CCGC	2 cut(s)	136, 461
StyI	CCWWGG	1 cut(s)	582
TaqI	TCGA	2 cut(s)	59, 147
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	4 cut(s)	62, 104, 129, 568
TatI	WGTACW	1 cut(s)	142
TauI	GCSGC	1 cut(s)	464
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	3 cut(s)	315, 480, 567
Tru9I	TTAA	3 cut(s)	315, 480, 567
TseI	GCWGC	4 cut(s)	89, 170, 350, 470
TspDTI	ATGAA	1 cut(s)	17
XmnI	GAANNNNTTC	2 cut(s)	445, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.