Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0012609

Physical Location & Seq

Genomic Coordinates Forward (+)

61524086 .. 61525865

Gene Structure 1780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG358000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAAGACCGACGATATGGCTATTGATGCTGAACGCAAGGATATAGAAGTTGATTTGTCGAAATTAGGAGCTGTCCATACAATGTTTGCAGCTTTATTCTGCAAATTGGTTGCTCCTATAAAGACTATAATTTCCCGCAATGTACTCGAAGAAACTCAGGATGGTAATGCTGCCGTTAGACCTCTCCCACTTGGAACATCAGTTAGTGGAAAGGTGAAGAAACAATGTGCCCACTATTTTGGTGTAACCATAAATGAGCAACAAGCCAAGTTGGGGATTGTGGTGCGAGTTACTTCGTTTGGAAGAAATAGATTTAAGTTGCTGTATCTTGAGCAAGATGCCAATAATGCTGGTTATCATTTGGTCTCACAGGAAGATAGTAAGATGATATGCAATGTACCATCTGCAGGGATGTATTTTTTGCATTTTCAAGTATATAGAATGGATTCAACTTTGAACGCGGCTCCAGCTGCATTTTTTAAAAGTTTGGAAGGTGTTCACCCTTGTGAGGTCTCACAACTAAAAGCTGGTACTCATATATTCGCTGTTTATGGAGATAATTTTTACAAGAAAACTCCCTATAAAATCGAGGCACTTTGTGCGGAGTCATCCAATGATAAAGCACATAGACTTAGAGAAGTAGAGGCTCAGATTTTAAAAAAGAGAGATGAACTTCACGAATTTGAGACAGAGTTCAGGGAGGCTTTGGCAGACTTTCAAGAAGTGACAAACAGATACCCCCTCGAAAAACAATCTGTAGATGAGCTGCTGAAACAACGAGACAATATCTATTCTTCTTACACTGTGAGGAACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008092 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

272

Amino Acids

30.83

Weight (kDa)

6.72

Isoelectric Point (pI)

33.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012609)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g27001 FvH4_4g27001
prunus_persica	Prupe.1G314100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0434811
rosa_laevigata	RLG00000006646
rosa_multiflora	Rmu_co8406493.1_g000001 Rmu_sc0000179.1_g000003
rosa_rugosa	Rorug04G0278600 Rorug04G0278700 Rorug04G0278800 Rorug04G0278900 Rorug04G0279000 Rorug04G0279100 Rorug04G0279200
rosa_samantha	Rh4AG335100 Rh4BG343600 Rh4CG358000 Rh4DG337500
rosa_wichuraiana	Rw4G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	461
AciI	CCGC	3 cut(s)	136, 461, 602
AcsI	RAATTY	1 cut(s)	680
AdeI	CACNNNGTG	1 cut(s)	599
AfaI	GTAC	3 cut(s)	144, 399, 532
AfiI	CCNNNNNNNGG	3 cut(s)	273, 407, 508
AgsI	TTSAA	4 cut(s)	431, 450, 457, 719
AleI	CACNNNNGTG	1 cut(s)	504
AluBI	AGCT	5 cut(s)	71, 92, 470, 527, 766
AluI	AGCT	5 cut(s)	71, 92, 470, 527, 766
Alw26I	GTCTC	4 cut(s)	370, 517, 680, 774
ApeKI	GCWGC	4 cut(s)	89, 170, 470, 766
ApoI	RAATTY	1 cut(s)	680
Asp700I	GAANNNNTTC	2 cut(s)	445, 495
AsuHPI	GGTGA	2 cut(s)	226, 491
BaeGI	GKGCMC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	4 cut(s)	101, 157, 457, 753
BccI	CCATC	2 cut(s)	155, 409
BceAI	ACGGC	1 cut(s)	158
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BcoDI	GTCTC	4 cut(s)	370, 517, 680, 774
BfmI	CTRYAG	2 cut(s)	405, 756
BisI	GCNGC	5 cut(s)	90, 171, 462, 471, 767
BlsI	GCNGC	5 cut(s)	91, 172, 463, 472, 768
BmiI	GGNNCC	1 cut(s)	465
BmsI	GCATC	2 cut(s)	16, 328
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	350
BsaI	GGTCTC	2 cut(s)	370, 517
Bsc4I	CCNNNNNNNGG	3 cut(s)	273, 407, 508
Bse3DI	GCAATG	2 cut(s)	145, 400
BseGI	GGATG	3 cut(s)	166, 417, 608
BseLI	CCNNNNNNNGG	3 cut(s)	273, 407, 508
BseMI	GCAATG	2 cut(s)	145, 400
BseMII	CTCAG	2 cut(s)	170, 662
BseSI	GKGCMC	1 cut(s)	232
BseXI	GCAGC	4 cut(s)	101, 157, 457, 753
Bsh1236I	CGCG	1 cut(s)	461
BslI	CCNNNNNNNGG	3 cut(s)	273, 407, 508
BsmAI	GTCTC	4 cut(s)	370, 517, 680, 774
Bso31I	GGTCTC	2 cut(s)	370, 517
Bsp1286I	GDGCHC	1 cut(s)	232
BspACI	CCGC	3 cut(s)	136, 461, 602
BspCNI	CTCAG	2 cut(s)	169, 661
BspFNI	CGCG	1 cut(s)	461
BspLI	GGNNCC	1 cut(s)	465
BspMAI	CTGCAG	1 cut(s)	409
BspTNI	GGTCTC	2 cut(s)	370, 517
BsrDI	GCAATG	2 cut(s)	145, 400
Bst4CI	ACNGT	1 cut(s)	805
BstAPI	GCANNNNNTGC	1 cut(s)	599
BstDEI	CTNAG	3 cut(s)	156, 632, 648
BstF5I	GGATG	3 cut(s)	166, 417, 608
BstFNI	CGCG	1 cut(s)	461
BstMAI	GTCTC	4 cut(s)	370, 517, 680, 774
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 347, 467, 470, 599
BstSFI	CTRYAG	2 cut(s)	405, 756
BstSLI	GKGCMC	1 cut(s)	232
BstUI	CGCG	1 cut(s)	461
BstV1I	GCAGC	4 cut(s)	101, 157, 457, 753
BstV2I	GAAGAC	1 cut(s)	11
BstXI	CCANNNNNNTGG	1 cut(s)	239
BtsCI	GGATG	3 cut(s)	166, 417, 608
BtsIMutI	CAGTG	1 cut(s)	801
Csp6I	GTAC	3 cut(s)	143, 398, 531
CviQI	GTAC	3 cut(s)	143, 398, 531
DdeI	CTNAG	3 cut(s)	156, 632, 648
DraI	TTTAAA	2 cut(s)	481, 657
DraIII	CACNNNGTG	1 cut(s)	599
Eco31I	GGTCTC	2 cut(s)	370, 517
FauI	CCCGC	1 cut(s)	143
Fnu4HI	GCNGC	5 cut(s)	90, 171, 462, 471, 767
FokI	GGATG	3 cut(s)	173, 424, 595
Fsp4HI	GCNGC	5 cut(s)	90, 171, 462, 471, 767
GluI	GCNGC	5 cut(s)	90, 171, 462, 471, 767
GsuI	CTGGAG	1 cut(s)	450
HinfI	GANTC	2 cut(s)	446, 605
HphI	GGTGA	2 cut(s)	226, 491
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	1 cut(s)	651
Hpy188III	TCNNGA	4 cut(s)	158, 329, 677, 719
Hpy8I	GTNNAC	1 cut(s)	499
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	485
HpyCH4III	ACNGT	1 cut(s)	805
HpyCH4V	TGCA	6 cut(s)	89, 102, 393, 407, 424, 473
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 347, 467, 470, 599
HpyF3I	CTNAG	3 cut(s)	156, 632, 648
LmnI	GCTCC	3 cut(s)	68, 118, 469
LpnPI	CCDG	7 cut(s)	143, 336, 356, 393, 480, 513, 682
Lsp1109I	GCAGC	4 cut(s)	101, 157, 457, 753
LweI	GCATC	2 cut(s)	16, 328
MaeIII	GTNAC	3 cut(s)	244, 289, 724
MboII	GAAGA	6 cut(s)	16, 161, 229, 315, 386, 786
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	6 cut(s)	62, 104, 129, 559, 680, 814
MlyI	GAGTC	1 cut(s)	614
MnlI	CCTC	7 cut(s)	192, 502, 583, 637, 694, 752, 801
MroXI	GAANNNNTTC	2 cut(s)	445, 495
MseI	TTAA	3 cut(s)	315, 480, 656
MslI	CAYNNNNRTG	1 cut(s)	504
MspA1I	CMGCKG	1 cut(s)	470
MvnI	CGCG	1 cut(s)	461
MwoI	GCNNNNNNNGC	5 cut(s)	26, 347, 467, 470, 599
NlaIV	GGNNCC	1 cut(s)	465
NmuCI	GTSAC	1 cut(s)	724
OliI	CACNNNNGTG	1 cut(s)	504
PdmI	GAANNNNTTC	2 cut(s)	445, 495
PfeI	GAWTC	1 cut(s)	446
PkrI	GCNGC	5 cut(s)	91, 172, 463, 472, 768
PleI	GAGTC	1 cut(s)	613
PpsI	GAGTC	1 cut(s)	613
PspN4I	GGNNCC	1 cut(s)	465
PstI	CTGCAG	1 cut(s)	409
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	3 cut(s)	144, 399, 532
RsaNI	GTAC	3 cut(s)	143, 398, 531
RseI	CAYNNNNRTG	1 cut(s)	504
SaqAI	TTAA	3 cut(s)	315, 480, 656
SatI	GCNGC	5 cut(s)	90, 171, 462, 471, 767
SchI	GAGTC	1 cut(s)	614
SduI	GDGCHC	1 cut(s)	232
SetI	ASST	9 cut(s)	73, 94, 184, 216, 472, 496, 513, 529, 768
SfaNI	GCATC	2 cut(s)	16, 328
SfcI	CTRYAG	2 cut(s)	405, 756
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	6 cut(s)	62, 104, 129, 559, 680, 814
SsiI	CCGC	3 cut(s)	136, 461, 602
TaaI	ACNGT	1 cut(s)	805
TaqI	TCGA	4 cut(s)	59, 147, 588, 744
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	6 cut(s)	62, 104, 129, 559, 680, 814
TatI	WGTACW	1 cut(s)	142
TauI	GCSGC	1 cut(s)	464
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	3 cut(s)	315, 480, 656
Tru9I	TTAA	3 cut(s)	315, 480, 656
TscAI	CASTG	1 cut(s)	808
TseFI	GTSAC	1 cut(s)	724
TseI	GCWGC	4 cut(s)	89, 170, 470, 766
Tsp45I	GTSAC	1 cut(s)	724
TspDTI	ATGAA	2 cut(s)	17, 684
TspRI	CASTG	1 cut(s)	808
XapI	RAATTY	1 cut(s)	680
XmnI	GAANNNNTTC	2 cut(s)	445, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.