Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0012609

Physical Location & Seq

Genomic Coordinates Forward (+)

50622557 .. 50623660

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG343600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAAGACCGACGATATGGCTATTGATGCTGAACGCAAGGATATAGAAGTTGATTTGTCGAAATTAGGAGCTGTCCATACAATGTTTGCAGCTTTATTCTGCAAATTGGTTGCTCCTATAAAGACTATAATTTCCCGCAATGTACTCGAAGAAACTCAGGATGGTAATGCTGCCGTTAGACCTCTCCCACTTGGAACATCAGTTAGTGGAAAGGTGAAGAAACAATGTGCCCACTATTTTGGTGTAACCATAAATGAGCAACAAGCCAAGTTGGGGATTGTGGTGCGAGTTACTTCGTTTGGAAGAAATAGATTTAAGTTGCTGTATCTTGAGCAAGATGCCAATAATGCTGGTTATCATTTGGTCTCACAGGTACGATATATATCCTCCATGTCAATTCATTTGTATAACCTTGCAACTGGTCCATTTGCTTTAGAATTTGACACCTCTTTCATATGTTTGAAATCGGTTGGAGTTATTAACTGCAGTTATTTGAAAACTATTGTTTGCATAACCAGCTTAGGTGTTGATTGGTATTGTGTTCTTTTTGTGAATATCAGTTATTTTCTGACATGTGACTTTTGCAAACTAGTCAATTTAATATTGATTGTCCTCCCTGTACAGGAAGATAGTAAGATGATATGCAATGTACCATCTGCAGGGATGTATTTTTTGCATTTTCAAGTATATAGAATGGATTCAACTTTGAACGCGGTATGCACATTTTTTAATTTTTTTTTTTTTTTTTTGTTTACCACTTTCGTGGTGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008092 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

257

Amino Acids

28.95

Weight (kDa)

8.0

Isoelectric Point (pI)

29.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012609)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g27001 FvH4_4g27001
prunus_persica	Prupe.1G314100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0434811
rosa_laevigata	RLG00000006646
rosa_multiflora	Rmu_co8406493.1_g000001 Rmu_sc0000179.1_g000003
rosa_rugosa	Rorug04G0278600 Rorug04G0278700 Rorug04G0278800 Rorug04G0278900 Rorug04G0279000 Rorug04G0279100 Rorug04G0279200
rosa_samantha	Rh4AG335100 Rh4BG343600 Rh4CG358000 Rh4DG337500
rosa_wichuraiana	Rw4G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	713
AciI	CCGC	2 cut(s)	136, 713
AcsI	RAATTY	1 cut(s)	437
AfaI	GTAC	4 cut(s)	144, 375, 621, 651
AfiI	CCNNNNNNNGG	3 cut(s)	273, 622, 659
AflIII	ACRYGT	1 cut(s)	572
AgsI	TTSAA	5 cut(s)	463, 496, 683, 702, 709
AhlI	ACTAGT	1 cut(s)	589
AleI	CACNNNNGTG	1 cut(s)	761
AluBI	AGCT	3 cut(s)	71, 92, 519
AluI	AGCT	3 cut(s)	71, 92, 519
Alw26I	GTCTC	1 cut(s)	370
ApeKI	GCWGC	2 cut(s)	89, 170
ApoI	RAATTY	1 cut(s)	437
Asp700I	GAANNNNTTC	1 cut(s)	697
AspS9I	GGNCC	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	422
BaeGI	GKGCMC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	101, 157
BccI	CCATC	2 cut(s)	155, 661
BceAI	ACGGC	1 cut(s)	158
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BcoDI	GTCTC	1 cut(s)	370
BcuI	ACTAGT	1 cut(s)	589
BfaI	CTAG	1 cut(s)	590
BfmI	CTRYAG	2 cut(s)	484, 657
BisI	GCNGC	2 cut(s)	90, 171
BlsI	GCNGC	2 cut(s)	91, 172
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	422
BmsI	GCATC	2 cut(s)	16, 328
BpiI	GAAGAC	1 cut(s)	11
Bpu10I	CCTNAGC	1 cut(s)	520
BpuEI	CTTGAG	1 cut(s)	350
BsaBI	GATNNNNATC	1 cut(s)	382
BsaI	GGTCTC	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	3 cut(s)	273, 622, 659
Bse1I	ACTGG	1 cut(s)	424
Bse3DI	GCAATG	2 cut(s)	145, 652
Bse8I	GATNNNNATC	1 cut(s)	382
BseGI	GGATG	2 cut(s)	166, 669
BseJI	GATNNNNATC	1 cut(s)	382
BseLI	CCNNNNNNNGG	3 cut(s)	273, 622, 659
BseMI	GCAATG	2 cut(s)	145, 652
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	1 cut(s)	424
BseSI	GKGCMC	1 cut(s)	232
BseXI	GCAGC	2 cut(s)	101, 157
Bsh1236I	CGCG	1 cut(s)	713
BslI	CCNNNNNNNGG	3 cut(s)	273, 622, 659
BsmAI	GTCTC	1 cut(s)	370
Bso31I	GGTCTC	1 cut(s)	370
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp1407I	TGTACA	1 cut(s)	619
BspACI	CCGC	2 cut(s)	136, 713
BspCNI	CTCAG	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	713
BspMAI	CTGCAG	2 cut(s)	488, 661
BspTNI	GGTCTC	1 cut(s)	370
BsrDI	GCAATG	2 cut(s)	145, 652
BsrGI	TGTACA	1 cut(s)	619
BsrI	ACTGG	1 cut(s)	424
BstAUI	TGTACA	1 cut(s)	619
BstDEI	CTNAG	2 cut(s)	156, 520
BstF5I	GGATG	2 cut(s)	166, 669
BstFNI	CGCG	1 cut(s)	713
BstMAI	GTCTC	1 cut(s)	370
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 347, 516
BstNSI	RCATGY	1 cut(s)	576
BstSFI	CTRYAG	2 cut(s)	484, 657
BstSLI	GKGCMC	1 cut(s)	232
BstUI	CGCG	1 cut(s)	713
BstV1I	GCAGC	2 cut(s)	101, 157
BstV2I	GAAGAC	1 cut(s)	11
BstXI	CCANNNNNNTGG	2 cut(s)	239, 763
BtsCI	GGATG	2 cut(s)	166, 669
Cfr13I	GGNCC	1 cut(s)	422
Csp6I	GTAC	4 cut(s)	143, 374, 620, 650
CviAII	CATG	2 cut(s)	391, 573
CviJI	RGCY	5 cut(s)	20, 71, 92, 266, 519
CviKI_1	RGCY	5 cut(s)	20, 71, 92, 266, 519
CviQI	GTAC	4 cut(s)	143, 374, 620, 650
DdeI	CTNAG	2 cut(s)	156, 520
Eco31I	GGTCTC	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	422
FaeI	CATG	2 cut(s)	394, 576
FatI	CATG	2 cut(s)	390, 572
FauI	CCCGC	1 cut(s)	143
FauNDI	CATATG	1 cut(s)	455
Fnu4HI	GCNGC	2 cut(s)	90, 171
FokI	GGATG	2 cut(s)	173, 676
Fsp4HI	GCNGC	2 cut(s)	90, 171
FspBI	CTAG	1 cut(s)	590
GluI	GCNGC	2 cut(s)	90, 171
Hin1II	CATG	2 cut(s)	394, 576
HinfI	GANTC	1 cut(s)	698
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	1 cut(s)	753
Hpy188I	TCNGA	1 cut(s)	570
Hpy188III	TCNNGA	2 cut(s)	158, 329
Hpy8I	GTNNAC	1 cut(s)	753
Hpy99I	CGWCG	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 347, 516
HpyF3I	CTNAG	2 cut(s)	156, 520
Hsp92II	CATG	2 cut(s)	394, 576
LmnI	GCTCC	2 cut(s)	68, 118
LpnPI	CCDG	8 cut(s)	143, 336, 356, 405, 529, 608, 630, 645
Lsp1109I	GCAGC	2 cut(s)	101, 157
LweI	GCATC	2 cut(s)	16, 328
MaeI	CTAG	1 cut(s)	590
MaeIII	GTNAC	3 cut(s)	244, 289, 575
MboII	GAAGA	5 cut(s)	16, 161, 229, 315, 638
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	7 cut(s)	62, 104, 129, 396, 437, 595, 730
MmeI	TCCRAC	1 cut(s)	451
MnlI	CCTC	4 cut(s)	192, 397, 457, 623
MroXI	GAANNNNTTC	1 cut(s)	697
MseI	TTAA	4 cut(s)	315, 480, 599, 729
MslI	CAYNNNNRTG	1 cut(s)	761
MvnI	CGCG	1 cut(s)	713
MwoI	GCNNNNNNNGC	3 cut(s)	26, 347, 516
NdeI	CATATG	1 cut(s)	455
NlaIII	CATG	2 cut(s)	394, 576
NmuCI	GTSAC	1 cut(s)	575
NspI	RCATGY	1 cut(s)	576
OliI	CACNNNNGTG	1 cut(s)	761
PciI	ACATGT	1 cut(s)	572
PdmI	GAANNNNTTC	1 cut(s)	697
PfeI	GAWTC	1 cut(s)	698
PkrI	GCNGC	2 cut(s)	91, 172
PscI	ACATGT	1 cut(s)	572
PspPI	GGNCC	1 cut(s)	422
PstI	CTGCAG	2 cut(s)	488, 661
RsaI	GTAC	4 cut(s)	144, 375, 621, 651
RsaNI	GTAC	4 cut(s)	143, 374, 620, 650
RseI	CAYNNNNRTG	1 cut(s)	761
SaqAI	TTAA	4 cut(s)	315, 480, 599, 729
SatI	GCNGC	2 cut(s)	90, 171
Sau96I	GGNCC	1 cut(s)	422
SduI	GDGCHC	1 cut(s)	232
SetI	ASST	9 cut(s)	73, 94, 184, 216, 375, 414, 449, 521, 526
SfaNI	GCATC	2 cut(s)	16, 328
SfcI	CTRYAG	2 cut(s)	484, 657
SinI	GGWCC	1 cut(s)	422
SmiMI	CAYNNNNRTG	1 cut(s)	761
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
SpeI	ACTAGT	1 cut(s)	589
Sse9I	AATT	7 cut(s)	62, 104, 129, 396, 437, 595, 730
SsiI	CCGC	2 cut(s)	136, 713
SspI	AATATT	1 cut(s)	603
SspMI	CTAG	1 cut(s)	590
TaqI	TCGA	2 cut(s)	59, 147
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	7 cut(s)	62, 104, 129, 396, 437, 595, 730
TatI	WGTACW	2 cut(s)	142, 619
TfiI	GAWTC	1 cut(s)	698
Tru1I	TTAA	4 cut(s)	315, 480, 599, 729
Tru9I	TTAA	4 cut(s)	315, 480, 599, 729
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	2 cut(s)	89, 170
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	3 cut(s)	17, 389, 442
VpaK11BI	GGWCC	1 cut(s)	422
XapI	RAATTY	1 cut(s)	437
XceI	RCATGY	1 cut(s)	576
XmnI	GAANNNNTTC	1 cut(s)	697
XspI	CTAG	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.