Rorug04G0278900

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012609
Physical Location & Seq
Forward (+)
45176945 .. 45177217
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0278900.1

Sequence Viewer

Length: 273 bp
ATGCTAATGACGGGGAGATTTGCGGAATCAAGAAAGGAGCTCGATGCTCTTGTCTCCGAGGAGTCACTGGAAATGGTGCCGTTTCTTATATTGGGAAACAAGATTCACATACCTCAAGCTGCCTCAGAGGATGAGCTGAGTTATTCAATGGGTGTGACCAAGTACAGAACTGGTAAGGGGAAGGTCAATCAGGCCAGTTACAACCTCCGCCCCCTTGAGGTGTTCATGTGCAGCATTGCCCGCAAAATGGGTTATGGCGAAGGATTCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0008092 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

90

Amino Acids

10.12

Weight (kDa)

7.86

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 5 - 89 1.4e-13 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 76
AciI CCGC 3 cut(s) 23, 208, 241
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 2 cut(s) 217, 247
AgsI TTSAA 1 cut(s) 147
AluBI AGCT 3 cut(s) 40, 119, 136
AluI AGCT 3 cut(s) 40, 119, 136
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 1 cut(s) 58
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 2 cut(s) 119, 231
BanI GGYRCC 1 cut(s) 76
BanII GRGCYC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 2 cut(s) 106, 243
BceAI ACGGC 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 58
BisI GCNGC 2 cut(s) 120, 232
BlsI GCNGC 2 cut(s) 121, 233
BmiI GGNNCC 1 cut(s) 78
BmsI GCATC 1 cut(s) 34
BpuEI CTTGAG 2 cut(s) 99, 236
BsaJI CCNNGG 1 cut(s) 57
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 247
Bse1I ACTGG 3 cut(s) 72, 175, 195
Bse3DI GCAATG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 2 cut(s) 217, 247
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 2 cut(s) 128, 138
BseNI ACTGG 3 cut(s) 72, 175, 195
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 2 cut(s) 106, 243
BsgI GTGCAG 1 cut(s) 250
BshFI GGCC 1 cut(s) 194
BshNI GGYRCC 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 42
BslI CCNNNNNNNGG 2 cut(s) 217, 247
BsmAI GTCTC 1 cut(s) 58
BsnI GGCC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 42
BspACI CCGC 3 cut(s) 23, 208, 241
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 2 cut(s) 129, 137
BspLI GGNNCC 1 cut(s) 78
BspT107I GGYRCC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 234
BsrI ACTGG 3 cut(s) 72, 175, 195
BssECI CCNNGG 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 241
BstDEI CTNAG 2 cut(s) 124, 137
BstF5I GGATG 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 106, 243
BsuRI GGCC 1 cut(s) 194
BtsCI GGATG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 65
Cac8I GCNNGC 1 cut(s) 241
Csp6I GTAC 1 cut(s) 163
CviAII CATG 1 cut(s) 226
CviJI RGCY 4 cut(s) 40, 119, 136, 194
CviKI_1 RGCY 4 cut(s) 40, 119, 136, 194
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 2 cut(s) 124, 137
EciI GGCGGA 1 cut(s) 197
Ecl136II GAGCTC 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 42
Eco53kI GAGCTC 1 cut(s) 40
EcoICRI GAGCTC 1 cut(s) 40
EcoT38I GRGCYC 1 cut(s) 42
FaeI CATG 1 cut(s) 229
FaiI YATR 4 cut(s) 89, 110, 227, 255
FatI CATG 1 cut(s) 225
FauI CCCGC 1 cut(s) 248
Fnu4HI GCNGC 2 cut(s) 120, 232
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 2 cut(s) 120, 232
GluI GCNGC 2 cut(s) 120, 232
HaeIII GGCC 1 cut(s) 194
Hin1II CATG 1 cut(s) 229
HinfI GANTC 4 cut(s) 26, 62, 103, 264
Hpy188I TCNGA 2 cut(s) 58, 127
Hpy188III TCNNGA 1 cut(s) 30
HpyAV CCTTC 2 cut(s) 175, 254
HpyCH4V TGCA 1 cut(s) 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
HpyF3I CTNAG 2 cut(s) 124, 137
Hsp92II CATG 1 cut(s) 229
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 5 cut(s) 53, 156, 176, 208, 253
Lsp1109I GCAGC 2 cut(s) 106, 243
LweI GCATC 1 cut(s) 34
MaeIII GTNAC 3 cut(s) 63, 154, 197
MhlI GDGCHC 1 cut(s) 42
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 6 cut(s) 52, 121, 123, 133, 211, 215
MwoI GCNNNNNNNGC 1 cut(s) 240
NlaIII CATG 1 cut(s) 229
NlaIV GGNNCC 1 cut(s) 78
NmuCI GTSAC 2 cut(s) 63, 154
PfeI GAWTC 3 cut(s) 26, 103, 264
PkrI GCNGC 2 cut(s) 121, 233
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
Psp124BI GAGCTC 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 78
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SacI GAGCTC 1 cut(s) 42
SatI GCNGC 2 cut(s) 120, 232
SchI GAGTC 1 cut(s) 71
SduI GDGCHC 1 cut(s) 42
SetI ASST 8 cut(s) 42, 115, 121, 138, 186, 207, 222, 272
SfaNI GCATC 1 cut(s) 34
SmlI CTYRAG 2 cut(s) 114, 215
SmoI CTYRAG 2 cut(s) 114, 215
SsiI CCGC 3 cut(s) 23, 208, 241
SstI GAGCTC 1 cut(s) 42
TaqI TCGA 1 cut(s) 42
TatI WGTACW 1 cut(s) 162
TfiI GAWTC 3 cut(s) 26, 103, 264
TscAI CASTG 1 cut(s) 72
TseFI GTSAC 2 cut(s) 63, 154
TseI GCWGC 2 cut(s) 119, 231
Tsp45I GTSAC 2 cut(s) 63, 154
TspDTI ATGAA 1 cut(s) 214
TspRI CASTG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.