Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0012609

Physical Location & Seq

Genomic Coordinates Forward (+)

28179041 .. 28181620

Gene Structure 2580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g27001.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGAAATTTTGGCACCGGATATGAAGACAGACGACATGGTAAATGCATTTCCGTCCTTGATTTTTACTTTTCTTTTCTTTATTCTGGAGAATTTTTATTTTAATTTTAATTTTGTTGGTGAGGCTATTGATGCTGAACACAAGGATATAGAAGTCGATTTGTCGAAATTAGGAGCTGTCAATACAATGCTTGCAGCTTTATTCTGCAAATTGGTTGCTCCTATCAAGACTATAATTTCCGGCAATGTATTCGAAGATGCACAGGATAGTAATGCTGCAGTCAGGCCTCTCCCTCTTGGAACATCAGTTACTGGAAAGGTGAGGAGACAGTGTGCCCACTATTTTGGCGTGACGATCAGTGAGCAACAAGCCAAGTCGGGGATTGTAGTGCGAGTTACTTCGTATGGAAGAAACAGATTTAAGTTGCTTTATTTGGAGCAAGATGCCAATAATGCTGGTTATCGTTTGGTCTCACAGGAAGATAGTAAGACGATAAGCAATGTACCATCGGCAGGGATGTATTTTCTCCATTTTCAAGTATACAGAATGGATTCAACTTTGAATGCAGCTCCAGCTGCATTTTTTAAGAGTTTGGAAGGTGTCCACCCTTGTGAGGTCTCACAACTAAAGGCTGGTACTCATATATTCGCTGTTTATGGAGATAACTTTTTCAAGAAAAGTCCTTACAAAATCGAGGCACTTTGTGTGGAGCCATCCAATGATAAAACACATAAACTTAGAGAAGTCGAGGCTCAGATTTTAAAAAAGAGAGATGAAATTCACGGATTTGAGACAGAGTTCAAGGAGGCTTTGGCAAACTTTCAAGAAGTGACGAACAGATACCCCCTTGAAAAACAATCTGTAGATGAGTTGCTGAAACAACGAGACGATATCTATTCTTCTTACACTGTGGAGAACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008092 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

308

Amino Acids

34.71

Weight (kDa)

5.59

Isoelectric Point (pI)

32.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012609)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g27001 FvH4_4g27001
prunus_persica	Prupe.1G314100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0434811
rosa_laevigata	RLG00000006646
rosa_multiflora	Rmu_co8406493.1_g000001 Rmu_sc0000179.1_g000003
rosa_rugosa	Rorug04G0278600 Rorug04G0278700 Rorug04G0278800 Rorug04G0278900 Rorug04G0279000 Rorug04G0279100 Rorug04G0279200
rosa_samantha	Rh4AG335100 Rh4BG343600 Rh4CG358000 Rh4DG337500
rosa_wichuraiana	Rw4G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	13
AccI	GTMKAC	1 cut(s)	540
AcsI	RAATTY	3 cut(s)	6, 91, 777
AdeI	CACNNNGTG	1 cut(s)	704
AfaI	GTAC	2 cut(s)	504, 637
AfiI	CCNNNNNNNGG	3 cut(s)	378, 512, 613
AgsI	TTSAA	7 cut(s)	536, 555, 562, 673, 802, 824, 851
AleI	CACNNNNGTG	1 cut(s)	609
AluBI	AGCT	4 cut(s)	176, 197, 569, 575
AluI	AGCT	4 cut(s)	176, 197, 569, 575
Alw26I	GTCTC	5 cut(s)	319, 475, 622, 785, 879
AlwNI	CAGNNNCTG	1 cut(s)	311
AoxI	GGCC	1 cut(s)	284
ApeKI	GCWGC	4 cut(s)	194, 275, 566, 575
ApoI	RAATTY	3 cut(s)	6, 91, 777
Asp700I	GAANNNNTTC	1 cut(s)	550
AsuHPI	GGTGA	2 cut(s)	131, 331
AsuII	TTCGAA	1 cut(s)	252
BaeGI	GKGCMC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	32
BbvI	GCAGC	4 cut(s)	206, 262, 562, 578
BccI	CCATC	2 cut(s)	514, 721
BcgI	CGANNNNNNTGC	2 cut(s)	232, 266
BcoDI	GTCTC	5 cut(s)	319, 475, 622, 785, 879
BfmI	CTRYAG	2 cut(s)	276, 861
BisI	GCNGC	4 cut(s)	195, 276, 567, 576
BlsI	GCNGC	4 cut(s)	196, 277, 568, 577
BmiI	GGNNCC	2 cut(s)	15, 711
BmsI	GCATC	3 cut(s)	121, 247, 433
BpiI	GAAGAC	1 cut(s)	32
BpmI	CTGGAG	2 cut(s)	107, 555
Bpu14I	TTCGAA	1 cut(s)	252
BsaI	GGTCTC	2 cut(s)	475, 622
BsaWI	WCCGGW	1 cut(s)	16
BsaXI	ACNNNNNCTCC	2 cut(s)	316, 346
Bsc4I	CCNNNNNNNGG	3 cut(s)	378, 512, 613
Bse1I	ACTGG	1 cut(s)	316
Bse3DI	GCAATG	2 cut(s)	250, 505
BseGI	GGATG	2 cut(s)	522, 713
BseLI	CCNNNNNNNGG	3 cut(s)	378, 512, 613
BseMI	GCAATG	2 cut(s)	250, 505
BseMII	CTCAG	1 cut(s)	767
BseNI	ACTGG	1 cut(s)	316
BseRI	GAGGAG	1 cut(s)	337
BseSI	GKGCMC	1 cut(s)	337
BseXI	GCAGC	4 cut(s)	206, 262, 562, 578
BshFI	GGCC	1 cut(s)	286
BshNI	GGYRCC	1 cut(s)	13
BsiSI	CCGG	2 cut(s)	17, 240
BslI	CCNNNNNNNGG	3 cut(s)	378, 512, 613
BsmAI	GTCTC	5 cut(s)	319, 475, 622, 785, 879
BsmBI	CGTCTC	1 cut(s)	879
BsmI	GAATGC	1 cut(s)	568
BsnI	GGCC	1 cut(s)	286
Bso31I	GGTCTC	2 cut(s)	475, 622
Bsp119I	TTCGAA	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	1 cut(s)	354
BspANI	GGCC	1 cut(s)	286
BspCNI	CTCAG	1 cut(s)	766
BspLI	GGNNCC	2 cut(s)	15, 711
BspMAI	CTGCAG	1 cut(s)	280
BspT104I	TTCGAA	1 cut(s)	252
BspT107I	GGYRCC	1 cut(s)	13
BspTNI	GGTCTC	2 cut(s)	475, 622
BsrDI	GCAATG	2 cut(s)	250, 505
BsrI	ACTGG	1 cut(s)	316
BssMI	GATC	1 cut(s)	354
BssNAI	GTATAC	1 cut(s)	541
Bst1107I	GTATAC	1 cut(s)	541
Bst4CI	ACNGT	2 cut(s)	330, 910
BstBI	TTCGAA	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	2 cut(s)	737, 753
BstF5I	GGATG	2 cut(s)	522, 713
BstKTI	GATC	1 cut(s)	357
BstMAI	GTCTC	5 cut(s)	319, 475, 622, 785, 879
BstMBI	GATC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 452, 572, 575
BstSFI	CTRYAG	2 cut(s)	276, 861
BstSLI	GKGCMC	1 cut(s)	337
BstV1I	GCAGC	4 cut(s)	206, 262, 562, 578
BstV2I	GAAGAC	1 cut(s)	32
BstXI	CCANNNNNNTGG	1 cut(s)	344
BstZ17I	GTATAC	1 cut(s)	541
BsuRI	GGCC	1 cut(s)	286
BtsCI	GGATG	2 cut(s)	522, 713
BtsIMutI	CAGTG	3 cut(s)	335, 364, 906
Cac8I	GCNNGC	1 cut(s)	192
CaiI	CAGNNNCTG	1 cut(s)	311
Csp6I	GTAC	2 cut(s)	503, 636
CviAII	CATG	1 cut(s)	37
CviQI	GTAC	2 cut(s)	503, 636
DdeI	CTNAG	2 cut(s)	737, 753
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
DraI	TTTAAA	1 cut(s)	762
DraIII	CACNNNGTG	1 cut(s)	704
Eco147I	AGGCCT	1 cut(s)	286
Eco31I	GGTCTC	2 cut(s)	475, 622
Eco32I	GATATC	1 cut(s)	892
EcoRV	GATATC	1 cut(s)	892
EcoT22I	ATGCAT	1 cut(s)	49
Esp3I	CGTCTC	1 cut(s)	879
FaeI	CATG	1 cut(s)	40
FatI	CATG	1 cut(s)	36
FblI	GTMKAC	1 cut(s)	540
Fnu4HI	GCNGC	4 cut(s)	195, 276, 567, 576
FokI	GGATG	2 cut(s)	529, 700
Fsp4HI	GCNGC	4 cut(s)	195, 276, 567, 576
GluI	GCNGC	4 cut(s)	195, 276, 567, 576
GsuI	CTGGAG	2 cut(s)	107, 555
HaeIII	GGCC	1 cut(s)	286
HapII	CCGG	2 cut(s)	17, 240
Hin1II	CATG	1 cut(s)	40
HinfI	GANTC	1 cut(s)	551
HpaII	CCGG	2 cut(s)	17, 240
HphI	GGTGA	2 cut(s)	131, 331
Hpy166II	GTNNAC	2 cut(s)	541, 604
Hpy188I	TCNGA	1 cut(s)	756
Hpy188III	TCNNGA	4 cut(s)	86, 226, 673, 824
Hpy8I	GTNNAC	2 cut(s)	541, 604
HpyAV	CCTTC	1 cut(s)	590
HpyCH4III	ACNGT	2 cut(s)	330, 910
HpyCH4V	TGCA	7 cut(s)	47, 194, 207, 260, 278, 566, 578
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 452, 572, 575
HpyF3I	CTNAG	2 cut(s)	737, 753
Hsp92II	CATG	1 cut(s)	40
Kzo9I	GATC	1 cut(s)	354
LmnI	GCTCC	5 cut(s)	173, 223, 436, 574, 709
Lsp1109I	GCAGC	4 cut(s)	206, 262, 562, 578
LweI	GCATC	3 cut(s)	121, 247, 433
MaeIII	GTNAC	4 cut(s)	307, 349, 394, 829
MalI	GATC	1 cut(s)	356
MboI	GATC	1 cut(s)	354
MboII	GAAGA	5 cut(s)	37, 266, 420, 491, 891
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	9 cut(s)	6, 91, 103, 109, 167, 209, 234, 777, 919
MnlI	CCTC	8 cut(s)	115, 297, 303, 315, 607, 688, 742, 799
Mph1103I	ATGCAT	1 cut(s)	49
MroXI	GAANNNNTTC	1 cut(s)	550
MseI	TTAA	5 cut(s)	102, 108, 420, 585, 761
MslI	CAYNNNNRTG	1 cut(s)	609
MspA1I	CMGCKG	1 cut(s)	575
MspI	CCGG	2 cut(s)	17, 240
Mva1269I	GAATGC	1 cut(s)	568
MwoI	GCNNNNNNNGC	4 cut(s)	131, 452, 572, 575
NdeII	GATC	1 cut(s)	354
NlaIII	CATG	1 cut(s)	40
NlaIV	GGNNCC	2 cut(s)	15, 711
NmuCI	GTSAC	2 cut(s)	349, 829
NsiI	ATGCAT	1 cut(s)	49
NspV	TTCGAA	1 cut(s)	252
OliI	CACNNNNGTG	1 cut(s)	609
PceI	AGGCCT	1 cut(s)	286
PctI	GAATGC	1 cut(s)	568
PdmI	GAANNNNTTC	1 cut(s)	550
PfeI	GAWTC	1 cut(s)	551
PkrI	GCNGC	4 cut(s)	196, 277, 568, 577
PspN4I	GGNNCC	2 cut(s)	15, 711
PsrI	GAACNNNNNNTAC	2 cut(s)	292, 324
PstI	CTGCAG	1 cut(s)	280
PstNI	CAGNNNCTG	1 cut(s)	311
PvuII	CAGCTG	1 cut(s)	575
RsaI	GTAC	2 cut(s)	504, 637
RsaNI	GTAC	2 cut(s)	503, 636
RseI	CAYNNNNRTG	1 cut(s)	609
SaqAI	TTAA	5 cut(s)	102, 108, 420, 585, 761
SatI	GCNGC	4 cut(s)	195, 276, 567, 576
Sau3AI	GATC	1 cut(s)	354
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	7 cut(s)	178, 199, 321, 571, 577, 601, 618
SfaNI	GCATC	3 cut(s)	121, 247, 433
SfcI	CTRYAG	2 cut(s)	276, 861
SfuI	TTCGAA	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	609
Sse9I	AATT	9 cut(s)	6, 91, 103, 109, 167, 209, 234, 777, 919
SseBI	AGGCCT	1 cut(s)	286
StuI	AGGCCT	1 cut(s)	286
TaaI	ACNGT	2 cut(s)	330, 910
TaqI	TCGA	5 cut(s)	156, 164, 252, 693, 747
TasI	AATT	9 cut(s)	6, 91, 103, 109, 167, 209, 234, 777, 919
TfiI	GAWTC	1 cut(s)	551
Tru1I	TTAA	5 cut(s)	102, 108, 420, 585, 761
Tru9I	TTAA	5 cut(s)	102, 108, 420, 585, 761
TscAI	CASTG	3 cut(s)	335, 364, 913
TseFI	GTSAC	2 cut(s)	349, 829
TseI	GCWGC	4 cut(s)	194, 275, 566, 575
Tsp45I	GTSAC	2 cut(s)	349, 829
TspDTI	ATGAA	2 cut(s)	38, 789
TspGWI	ACGGA	2 cut(s)	42, 798
TspRI	CASTG	3 cut(s)	335, 364, 913
XapI	RAATTY	3 cut(s)	6, 91, 777
XmiI	GTMKAC	1 cut(s)	540
XmnI	GAANNNNTTC	1 cut(s)	550
Zsp2I	ATGCAT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.