Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8406493.1

Orthogroup ID

OG0012609

Physical Location & Seq

Genomic Coordinates Reverse (-)

234 .. 994

Gene Structure 761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8406493.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atggattcaactttgaacgcggctccagctgcattttttaaaagtttggaaggtgttcacccttgtgaggtctcacaactaaaagctggtactcatatattcgctgtttatggagataatttttacaagaaaactccctataaaatcgaggcactttgtgcagagtcatccaatgataaagcacatagacttagagaagtagaggctcagattttaaaaaagagagatgaacttcacgaatttgagacacagttcagggaggctttggcagactttcaagaagtgacaaacagatacccactcgaaaaacaatctgtagatgagctgctgaaacaacgagacaatatctattcttcttacactgtgaggaacaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008092 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

125

Amino Acids

14.45

Weight (kDa)

5.81

Isoelectric Point (pI)

34.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012609)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g27001 FvH4_4g27001
prunus_persica	Prupe.1G314100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0434811
rosa_laevigata	RLG00000006646
rosa_multiflora	Rmu_co8406493.1_g000001 Rmu_sc0000179.1_g000003
rosa_rugosa	Rorug04G0278600 Rorug04G0278700 Rorug04G0278800 Rorug04G0278900 Rorug04G0279000 Rorug04G0279100 Rorug04G0279200
rosa_samantha	Rh4AG335100 Rh4BG343600 Rh4CG358000 Rh4DG337500
rosa_wichuraiana	Rw4G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	20
AciI	CCGC	1 cut(s)	20
AcsI	RAATTY	1 cut(s)	239
AdeI	CACNNNGTG	1 cut(s)	158
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	3 cut(s)	9, 16, 278
AleI	CACNNNNGTG	1 cut(s)	63
AluBI	AGCT	3 cut(s)	29, 86, 325
AluI	AGCT	3 cut(s)	29, 86, 325
Alw26I	GTCTC	3 cut(s)	76, 239, 333
ApeKI	GCWGC	2 cut(s)	29, 325
ApoI	RAATTY	1 cut(s)	239
Asp700I	GAANNNNTTC	1 cut(s)	54
AsuHPI	GGTGA	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	16, 312
BcoDI	GTCTC	3 cut(s)	76, 239, 333
BfmI	CTRYAG	1 cut(s)	315
BisI	GCNGC	3 cut(s)	21, 30, 326
BlsI	GCNGC	3 cut(s)	22, 31, 327
BmiI	GGNNCC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
BseGI	GGATG	1 cut(s)	167
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	221
BseXI	GCAGC	2 cut(s)	16, 312
BsgI	GTGCAG	1 cut(s)	180
Bsh1236I	CGCG	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	3 cut(s)	76, 239, 333
Bso31I	GGTCTC	1 cut(s)	76
BspACI	CCGC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	1 cut(s)	24
BspTNI	GGTCTC	1 cut(s)	76
Bst4CI	ACNGT	2 cut(s)	252, 364
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstDEI	CTNAG	2 cut(s)	191, 207
BstF5I	GGATG	1 cut(s)	167
BstFNI	CGCG	1 cut(s)	20
BstMAI	GTCTC	3 cut(s)	76, 239, 333
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 29, 158
BstSFI	CTRYAG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	16, 312
BtsCI	GGATG	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	360
Csp6I	GTAC	1 cut(s)	90
CviJI	RGCY	6 cut(s)	23, 29, 86, 206, 263, 325
CviKI_1	RGCY	6 cut(s)	23, 29, 86, 206, 263, 325
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	2 cut(s)	191, 207
DraI	TTTAAA	2 cut(s)	40, 216
DraIII	CACNNNGTG	1 cut(s)	158
Eco31I	GGTCTC	1 cut(s)	76
FaiI	YATR	5 cut(s)	96, 98, 111, 141, 186
Fnu4HI	GCNGC	3 cut(s)	21, 30, 326
FokI	GGATG	1 cut(s)	154
Fsp4HI	GCNGC	3 cut(s)	21, 30, 326
GluI	GCNGC	3 cut(s)	21, 30, 326
GsuI	CTGGAG	1 cut(s)	9
HinfI	GANTC	2 cut(s)	5, 164
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	1 cut(s)	210
Hpy188III	TCNNGA	2 cut(s)	236, 278
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	2 cut(s)	252, 364
HpyCH4V	TGCA	2 cut(s)	32, 161
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 29, 158
HpyF3I	CTNAG	2 cut(s)	191, 207
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	3 cut(s)	39, 72, 241
Lsp1109I	GCAGC	2 cut(s)	16, 312
MaeIII	GTNAC	1 cut(s)	283
MboII	GAAGA	1 cut(s)	345
MluCI	AATT	3 cut(s)	118, 239, 373
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	5 cut(s)	61, 142, 196, 253, 360
MroXI	GAANNNNTTC	1 cut(s)	54
MseI	TTAA	2 cut(s)	39, 215
MslI	CAYNNNNRTG	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	29
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	3 cut(s)	26, 29, 158
NlaIV	GGNNCC	1 cut(s)	24
NmuCI	GTSAC	1 cut(s)	283
OliI	CACNNNNGTG	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	3 cut(s)	22, 31, 327
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	24
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
RseI	CAYNNNNRTG	1 cut(s)	63
SaqAI	TTAA	2 cut(s)	39, 215
SatI	GCNGC	3 cut(s)	21, 30, 326
SchI	GAGTC	1 cut(s)	173
SetI	ASST	5 cut(s)	31, 55, 72, 88, 327
SfcI	CTRYAG	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	63
Sse9I	AATT	3 cut(s)	118, 239, 373
SsiI	CCGC	1 cut(s)	20
TaaI	ACNGT	2 cut(s)	252, 364
TaqI	TCGA	2 cut(s)	147, 303
TasI	AATT	3 cut(s)	118, 239, 373
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	39, 215
Tru9I	TTAA	2 cut(s)	39, 215
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	2 cut(s)	29, 325
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	367
XapI	RAATTY	1 cut(s)	239
XmnI	GAANNNNTTC	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.