Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000179.1

Orthogroup ID

OG0012609

Physical Location & Seq

Genomic Coordinates Forward (+)

19715 .. 24933

Gene Structure 5219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000179.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atgaagaccgacgatatggtaaaggcatttccgtccttaatttttatttttgttttctttattccggagaattttaattttaatttttttggtgaggctattgatgctgaacgcaaggatatagaagttgatttgtcgaaattaggagctgtccatacaatgtttgcagctttattctgcaaattggttgctcctataaagactataatttcccgcaatgtactcgaagaaactcaggatggtaatgctgccgttagacctctcccacttggaacatcagttagtggaaaggtgaagaaacaatgtgcccactattttggtgtaaccataaatgagcaacaagccaagctggggattgtggtgcgagttacttcgtttggaagaaatagatttaagacccaacggaaacccaccgacccgactcgactggttctctcacctccagccacctacggcgacgagacaagccctgaccggctcagactagccttccgcgtcgccctgtggtggtggtttgcacgatggttcacaggaaagcggatatcggagcgccaacagttgaaacaatcgggacccgaccagaaatccacttttcttgcgacttctcgaccgatccttctcagttttggaatctcctcctcctcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008092 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

215

Amino Acids

24.27

Weight (kDa)

9.96

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012609)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g27001 FvH4_4g27001
prunus_persica	Prupe.1G314100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0434811
rosa_laevigata	RLG00000006646
rosa_multiflora	Rmu_co8406493.1_g000001 Rmu_sc0000179.1_g000003
rosa_rugosa	Rorug04G0278600 Rorug04G0278700 Rorug04G0278800 Rorug04G0278900 Rorug04G0279000 Rorug04G0279100 Rorug04G0279200
rosa_samantha	Rh4AG335100 Rh4BG343600 Rh4CG358000 Rh4DG337500
rosa_wichuraiana	Rw4G029220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	495
AccIII	TCCGGA	1 cut(s)	64
AciI	CCGC	3 cut(s)	214, 493, 538
AclWI	GGATC	1 cut(s)	607
AcsI	RAATTY	1 cut(s)	70
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	2 cut(s)	351, 507
AgsI	TTSAA	1 cut(s)	562
AluBI	AGCT	3 cut(s)	149, 170, 349
AluI	AGCT	3 cut(s)	149, 170, 349
Alw26I	GTCTC	1 cut(s)	455
AlwI	GGATC	1 cut(s)	607
Aor13HI	TCCGGA	1 cut(s)	64
ApeKI	GCWGC	2 cut(s)	167, 248
ApoI	RAATTY	1 cut(s)	70
AspLEI	GCGC	1 cut(s)	552
AspS9I	GGNCC	1 cut(s)	572
AsuHPI	GGTGA	3 cut(s)	104, 304, 429
AvaII	GGWCC	1 cut(s)	572
BaeGI	GKGCMC	1 cut(s)	310
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	179, 235
BccI	CCATC	2 cut(s)	233, 516
BceAI	ACGGC	2 cut(s)	236, 469
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	1 cut(s)	485
BfoI	RGCGCY	1 cut(s)	553
BisI	GCNGC	2 cut(s)	168, 249
BlsI	GCNGC	2 cut(s)	169, 250
Bme18I	GGWCC	1 cut(s)	572
BmgT120I	GGNCC	1 cut(s)	572
BmiI	GGNNCC	2 cut(s)	573, 574
BmsI	GCATC	1 cut(s)	94
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	426
BsaWI	WCCGGW	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	2 cut(s)	351, 507
Bse118I	RCCGGY	1 cut(s)	474
Bse1I	ACTGG	1 cut(s)	432
Bse3DI	GCAATG	1 cut(s)	223
BseAI	TCCGGA	1 cut(s)	64
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	2 cut(s)	351, 507
BseMI	GCAATG	1 cut(s)	223
BseMII	CTCAG	3 cut(s)	248, 493, 634
BseNI	ACTGG	1 cut(s)	432
BseRI	GAGGAG	3 cut(s)	625, 628, 631
BseSI	GKGCMC	1 cut(s)	310
BseXI	GCAGC	2 cut(s)	179, 235
BseYI	CCCAGC	1 cut(s)	349
Bsh1236I	CGCG	1 cut(s)	495
Bsh1285I	CGRYCG	1 cut(s)	611
BsiEI	CGRYCG	1 cut(s)	611
BsiSI	CCGG	2 cut(s)	65, 475
BslFI	GGGAC	1 cut(s)	585
BslI	CCNNNNNNNGG	2 cut(s)	351, 507
BsmAI	GTCTC	1 cut(s)	455
BsmFI	GGGAC	1 cut(s)	585
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp13I	TCCGGA	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	612
BspACI	CCGC	3 cut(s)	214, 493, 538
BspCNI	CTCAG	3 cut(s)	247, 492, 633
BspEI	TCCGGA	1 cut(s)	64
BspFNI	CGCG	1 cut(s)	495
BspLI	GGNNCC	2 cut(s)	573, 574
BspPI	GGATC	1 cut(s)	607
BsrDI	GCAATG	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	432
BssAI	RCCGGY	1 cut(s)	474
BssMI	GATC	1 cut(s)	612
Bst4CI	ACNGT	1 cut(s)	558
BstDEI	CTNAG	3 cut(s)	234, 479, 620
BstF5I	GGATG	1 cut(s)	244
BstFNI	CGCG	1 cut(s)	495
BstH2I	RGCGCY	1 cut(s)	553
BstHHI	GCGC	1 cut(s)	552
BstKTI	GATC	1 cut(s)	615
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	1 cut(s)	612
BstMCI	CGRYCG	1 cut(s)	611
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstSLI	GKGCMC	1 cut(s)	310
BstUI	CGCG	1 cut(s)	495
BstV1I	GCAGC	2 cut(s)	179, 235
BstV2I	GAAGAC	1 cut(s)	11
BstXI	CCANNNNNNTGG	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	244
CfoI	GCGC	1 cut(s)	552
Cfr10I	RCCGGY	1 cut(s)	474
Cfr13I	GGNCC	1 cut(s)	572
CseI	GACGC	1 cut(s)	484
Csp6I	GTAC	1 cut(s)	221
CspCI	CAANNNNNGTGG	2 cut(s)	577, 612
CviJI	RGCY	9 cut(s)	98, 149, 170, 344, 349, 446, 468, 478, 488
CviKI_1	RGCY	9 cut(s)	98, 149, 170, 344, 349, 446, 468, 478, 488
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	3 cut(s)	234, 479, 620
DpnI	GATC	1 cut(s)	614
DpnII	GATC	1 cut(s)	612
Eco32I	GATATC	1 cut(s)	543
Eco47I	GGWCC	1 cut(s)	572
EcoO109I	RGGNCCY	1 cut(s)	572
EcoRV	GATATC	1 cut(s)	543
FaiI	YATR	6 cut(s)	17, 122, 156, 197, 206, 329
FaqI	GGGAC	1 cut(s)	585
FauI	CCCGC	1 cut(s)	221
Fnu4HI	GCNGC	2 cut(s)	168, 249
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	2 cut(s)	168, 249
FspBI	CTAG	1 cut(s)	485
GlaI	GCGC	1 cut(s)	551
GluI	GCNGC	2 cut(s)	168, 249
GsaI	CCCAGC	1 cut(s)	353
GsuI	CTGGAG	1 cut(s)	426
HaeII	RGCGCY	1 cut(s)	553
HapII	CCGG	2 cut(s)	65, 475
HgaI	GACGC	1 cut(s)	484
HhaI	GCGC	1 cut(s)	552
Hin6I	GCGC	1 cut(s)	550
HinP1I	GCGC	1 cut(s)	550
HinfI	GANTC	2 cut(s)	421, 630
HpaII	CCGG	2 cut(s)	65, 475
HphI	GGTGA	3 cut(s)	104, 304, 429
Hpy166II	GTNNAC	1 cut(s)	528
Hpy188I	TCNGA	2 cut(s)	482, 547
Hpy188III	TCNNGA	5 cut(s)	65, 236, 570, 606, 645
Hpy8I	GTNNAC	1 cut(s)	528
Hpy99I	CGWCG	3 cut(s)	14, 461, 500
HpyAV	CCTTC	2 cut(s)	499, 626
HpyCH4III	ACNGT	1 cut(s)	558
HpyCH4V	TGCA	3 cut(s)	167, 180, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	3 cut(s)	234, 479, 620
HspAI	GCGC	1 cut(s)	550
KflI	GGGWCCC	1 cut(s)	572
Kpn2I	TCCGGA	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	612
LmnI	GCTCC	3 cut(s)	146, 196, 547
Lsp1109I	GCAGC	2 cut(s)	179, 235
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	485
MaeIII	GTNAC	2 cut(s)	322, 367
MalI	GATC	1 cut(s)	614
MboI	GATC	1 cut(s)	612
MboII	GAAGA	4 cut(s)	16, 239, 307, 393
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	7 cut(s)	39, 70, 76, 82, 140, 182, 207
MlyI	GAGTC	1 cut(s)	415
MnlI	CCTC	4 cut(s)	88, 270, 450, 646
MroI	TCCGGA	1 cut(s)	64
MseI	TTAA	4 cut(s)	38, 75, 81, 393
MspI	CCGG	2 cut(s)	65, 475
MvnI	CGCG	1 cut(s)	495
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeII	GATC	1 cut(s)	612
NlaIV	GGNNCC	2 cut(s)	573, 574
PfeI	GAWTC	1 cut(s)	630
PkrI	GCNGC	2 cut(s)	169, 250
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
PpuMI	RGGWCCY	1 cut(s)	572
Psp5II	RGGWCCY	1 cut(s)	572
PspFI	CCCAGC	1 cut(s)	349
PspN4I	GGNNCC	2 cut(s)	573, 574
PspPI	GGNCC	1 cut(s)	572
PspPPI	RGGWCCY	1 cut(s)	572
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SaqAI	TTAA	4 cut(s)	38, 75, 81, 393
SatI	GCNGC	2 cut(s)	168, 249
Sau3AI	GATC	1 cut(s)	612
Sau96I	GGNCC	1 cut(s)	572
SchI	GAGTC	1 cut(s)	415
SduI	GDGCHC	1 cut(s)	310
SetI	ASST	7 cut(s)	151, 172, 262, 294, 351, 442, 452
SfaNI	GCATC	1 cut(s)	94
SinI	GGWCC	1 cut(s)	572
Sse9I	AATT	7 cut(s)	39, 70, 76, 82, 140, 182, 207
SsiI	CCGC	3 cut(s)	214, 493, 538
SspMI	CTAG	1 cut(s)	485
TaaI	ACNGT	1 cut(s)	558
TaqI	TCGA	4 cut(s)	137, 225, 424, 607
TaqII	GACCGA	2 cut(s)	23, 625
TasI	AATT	7 cut(s)	39, 70, 76, 82, 140, 182, 207
TatI	WGTACW	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	630
Tru1I	TTAA	4 cut(s)	38, 75, 81, 393
Tru9I	TTAA	4 cut(s)	38, 75, 81, 393
TseI	GCWGC	2 cut(s)	167, 248
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	21, 418
VpaK11BI	GGWCC	1 cut(s)	572
XapI	RAATTY	1 cut(s)	70
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.