Rorug04G0278800

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012609
Physical Location & Seq
Forward (+)
45167583 .. 45169469
1887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0278800.1

Sequence Viewer

Length: 552 bp
ATGTTGGGTAGCGTCAACACTCATATCGAGGCTTCATCAAAGCCGTCGTCGTTCGAGTTCCCTGGATTCGACAAGGGTGGCATGTTCGACCTCGGCCACCCTCTCCTCAACCGCATCGCCGAGAGCTTTGTCAAAGCCGCTGGGATCGGAGCTATTCAGGCTGTCTCACGTGAGGCTTATTTCACTGCCACTGAAGCTTCAGGACTTGATTCAACTAGTGGAATTCCGCCGGAAATTTCAGGCCACAAAAAGAATCGCTTCCCAAACCTCAGAGGGGATAACAACAGAAAATCTCTTGAAGCTATGGTGAAGCACACTGGAAAGGAATCTTTACAATGGGGGCTAGCTGCAGGGGTGTACTCAGGCCTCACTTATGGACTGAAGGAGGCTCGTGGAGCCCATGACTGGAAAAACAGTGCAGTTGCAGGAGCAATTACCGGTGTGGCTCTGGCACTCACATCCGACAGTTCCTCACATGAGCAGATTGTGCAATGTGCTATCACTGGAGCTGCCATTTCCACGGCTGCAAATCTTCTCTCTGGAATATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0008092 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

183

Amino Acids

19.06

Weight (kDa)

7.02

Isoelectric Point (pI)

26.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim17 PF02466 36 - 173 8.2e-17 Tim17/Tim22/Tim23/Pmp24 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 112, 138, 227
AclWI GGATC 1 cut(s) 152
AcoI YGGCCR 1 cut(s) 94
AcsI RAATTY 2 cut(s) 222, 234
AcuI CTGAAG 3 cut(s) 183, 213, 401
AcvI CACGTG 1 cut(s) 170
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 2 cut(s) 274, 405
AgeI ACCGGT 1 cut(s) 437
AgsI TTSAA 2 cut(s) 213, 299
AhlI ACTAGT 1 cut(s) 215
AjnI CCWGG 1 cut(s) 61
AluBI AGCT 6 cut(s) 126, 152, 197, 302, 347, 509
AluI AGCT 6 cut(s) 126, 152, 197, 302, 347, 509
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 1 cut(s) 152
AoxI GGCC 3 cut(s) 94, 241, 364
ApeKI GCWGC 3 cut(s) 347, 509, 524
ApoI RAATTY 2 cut(s) 222, 234
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
AsiGI ACCGGT 1 cut(s) 437
Asp700I GAANNNNTTC 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 319
AsuNHI GCTAGC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 400
BauI CACGAG 1 cut(s) 390
BbrPI CACGTG 1 cut(s) 170
BbvI GCAGC 3 cut(s) 334, 496, 511
BceAI ACGGC 2 cut(s) 28, 537
BciT130I CCWGG 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 169
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 2 cut(s) 216, 344
BfmI CTRYAG 1 cut(s) 348
BisI GCNGC 4 cut(s) 138, 348, 510, 525
BlsI GCNGC 4 cut(s) 139, 349, 511, 526
Bme1390I CCNGG 1 cut(s) 63
BmiI GGNNCC 1 cut(s) 397
BmrFI CCNGG 1 cut(s) 63
BmsI GCATC 1 cut(s) 123
BmtI GCTAGC 1 cut(s) 347
BpmI CTGGAG 1 cut(s) 525
BsaAI YACGTR 1 cut(s) 170
BsaJI CCNNGG 3 cut(s) 61, 91, 519
BsaWI WCCGGW 1 cut(s) 437
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 405
Bse118I RCCGGY 1 cut(s) 437
Bse1I ACTGG 3 cut(s) 322, 410, 508
Bse3DI GCAATG 1 cut(s) 497
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 3 cut(s) 61, 91, 519
BseGI GGATG 1 cut(s) 458
BseLI CCNNNNNNNGG 2 cut(s) 274, 405
BseMI GCAATG 1 cut(s) 497
BseMII CTCAG 2 cut(s) 283, 375
BseNI ACTGG 3 cut(s) 322, 410, 508
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 3 cut(s) 334, 496, 511
BseYI CCCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 438
BshFI GGCC 3 cut(s) 96, 243, 366
BshTI ACCGGT 1 cut(s) 437
BsiSI CCGG 2 cut(s) 230, 438
BslI CCNNNNNNNGG 2 cut(s) 274, 405
BsmAI GTCTC 1 cut(s) 169
BsnI GGCC 3 cut(s) 96, 243, 366
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 1 cut(s) 144
BspACI CCGC 3 cut(s) 112, 138, 227
BspANI GGCC 3 cut(s) 96, 243, 366
BspCNI CTCAG 2 cut(s) 282, 374
BspLI GGNNCC 1 cut(s) 397
BspMAI CTGCAG 1 cut(s) 352
BspOI GCTAGC 1 cut(s) 347
BspPI GGATC 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 497
BsrFI RCCGGY 1 cut(s) 437
BsrI ACTGG 3 cut(s) 322, 410, 508
BssAI RCCGGY 1 cut(s) 437
BssECI CCNNGG 3 cut(s) 61, 91, 519
BssMI GATC 1 cut(s) 144
BssSI CACGAG 1 cut(s) 390
Bst2BI CACGAG 1 cut(s) 390
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 416, 467
BstAPI GCANNNNNTGC 1 cut(s) 487
BstBAI YACGTR 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 2 cut(s) 269, 361
BstDSI CCRYGG 1 cut(s) 519
BstF5I GGATG 1 cut(s) 458
BstKTI GATC 1 cut(s) 147
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 1 cut(s) 144
BstMWI GCNNNNNNNGC 4 cut(s) 158, 194, 395, 487
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 61
BstSFI CTRYAG 1 cut(s) 348
BstV1I GCAGC 3 cut(s) 334, 496, 511
BsuRI GGCC 3 cut(s) 96, 243, 366
BtgI CCRYGG 1 cut(s) 519
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 1 cut(s) 458
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 5 cut(s) 183, 189, 315, 421, 501
Cac8I GCNNGC 1 cut(s) 345
Cfr10I RCCGGY 1 cut(s) 437
Csp6I GTAC 1 cut(s) 358
CspAI ACCGGT 1 cut(s) 437
CviAII CATG 3 cut(s) 82, 401, 476
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 2 cut(s) 269, 361
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
EaeI YGGCCR 1 cut(s) 94
EciI GGCGGA 1 cut(s) 216
Eco147I AGGCCT 1 cut(s) 366
Eco24I GRGCYC 1 cut(s) 400
Eco57I CTGAAG 3 cut(s) 183, 213, 401
Eco72I CACGTG 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 400
FaeI CATG 3 cut(s) 85, 404, 479
FaiI YATR 6 cut(s) 24, 83, 305, 375, 402, 477
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FatI CATG 3 cut(s) 81, 400, 475
Fnu4HI GCNGC 4 cut(s) 138, 348, 510, 525
FokI GGATG 1 cut(s) 445
FriOI GRGCYC 1 cut(s) 400
Fsp4HI GCNGC 4 cut(s) 138, 348, 510, 525
FspBI CTAG 2 cut(s) 216, 344
GluI GCNGC 4 cut(s) 138, 348, 510, 525
GsaI CCCAGC 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 525
HaeIII GGCC 3 cut(s) 96, 243, 366
HapII CCGG 2 cut(s) 230, 438
Hin1II CATG 3 cut(s) 85, 404, 479
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 195
HinfI GANTC 4 cut(s) 66, 209, 253, 326
HpaII CCGG 2 cut(s) 230, 438
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 2 cut(s) 16, 358
Hpy188I TCNGA 3 cut(s) 149, 272, 463
Hpy188III TCNNGA 3 cut(s) 201, 296, 540
Hpy8I GTNNAC 2 cut(s) 16, 358
Hpy99I CGWCG 2 cut(s) 49, 52
HpyAV CCTTC 1 cut(s) 376
HpyCH4III ACNGT 2 cut(s) 416, 467
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 5 cut(s) 350, 419, 425, 490, 527
HpyF10VI GCNNNNNNNGC 4 cut(s) 158, 194, 395, 487
HpyF3I CTNAG 2 cut(s) 269, 361
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 3 cut(s) 85, 404, 479
Kzo9I GATC 1 cut(s) 144
LmnI GCTCC 4 cut(s) 149, 395, 428, 506
Lsp1109I GCAGC 3 cut(s) 334, 496, 511
LweI GCATC 1 cut(s) 123
MaeI CTAG 2 cut(s) 216, 344
MaeII ACGT 1 cut(s) 169
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MboII GAAGA 1 cut(s) 524
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 3 cut(s) 222, 234, 432
MmeI TCCRAC 1 cut(s) 486
MroXI GAANNNNTTC 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 2 cut(s) 230, 438
MspR9I CCNGG 1 cut(s) 63
MvaI CCWGG 1 cut(s) 63
MwoI GCNNNNNNNGC 4 cut(s) 158, 194, 395, 487
NdeII GATC 1 cut(s) 144
NheI GCTAGC 1 cut(s) 343
NlaIII CATG 3 cut(s) 85, 404, 479
NlaIV GGNNCC 1 cut(s) 397
NmeAIII GCCGAG 2 cut(s) 72, 145
NspI RCATGY 1 cut(s) 85
PceI AGGCCT 1 cut(s) 366
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 4 cut(s) 66, 209, 253, 326
PinAI ACCGGT 1 cut(s) 437
PkrI GCNGC 4 cut(s) 139, 349, 511, 526
PmaCI CACGTG 1 cut(s) 170
PmlI CACGTG 1 cut(s) 170
Ppu21I YACGTR 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 61
PspCI CACGTG 1 cut(s) 170
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 1 cut(s) 397
PstI CTGCAG 1 cut(s) 352
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
SatI GCNGC 4 cut(s) 138, 348, 510, 525
Sau3AI GATC 1 cut(s) 144
ScrFI CCNGG 1 cut(s) 63
SduI GDGCHC 1 cut(s) 400
SetI ASST 9 cut(s) 93, 128, 154, 172, 199, 270, 304, 349, 511
SfaNI GCATC 1 cut(s) 123
SfcI CTRYAG 1 cut(s) 348
SpeI ACTAGT 1 cut(s) 215
Sse9I AATT 3 cut(s) 222, 234, 432
SseBI AGGCCT 1 cut(s) 366
SsiI CCGC 3 cut(s) 112, 138, 227
SspI AATATT 1 cut(s) 546
SspMI CTAG 2 cut(s) 216, 344
StuI AGGCCT 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 61
TaaI ACNGT 2 cut(s) 416, 467
TaiI ACGT 1 cut(s) 172
TaqI TCGA 4 cut(s) 27, 54, 69, 87
TasI AATT 3 cut(s) 222, 234, 432
TatI WGTACW 1 cut(s) 357
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 4 cut(s) 66, 209, 253, 326
TscAI CASTG 5 cut(s) 190, 196, 322, 421, 508
TseI GCWGC 3 cut(s) 347, 509, 524
TspDTI ATGAA 1 cut(s) 24
TspRI CASTG 5 cut(s) 190, 196, 322, 421, 508
XapI RAATTY 2 cut(s) 222, 234
XceI RCATGY 1 cut(s) 85
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 2 cut(s) 216, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.