Rroxscaffold_5G00376010

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0013340
Physical Location & Seq
Forward (+)
56781422 .. 56785940
4519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00376010.1

Sequence Viewer

Length: 1251 bp
ATGGGCTCGGGTTCGAAACTGGAAGGCACATCAGCTCTGCCTATACGGCGAGACCCCTACGAAGTCCTGTGCGTTTCTAGGGATTCATCTGATCAGGAAATCAAAACCGCCTATCGGAAACTCGCTCTCAAGTATCATCCAGACAAGAATACGAACAATCCGGAAGCGGCAGAACAGTTCAAGGAGGTTGCGTTTTCGTATGGCATCTTATCTGACCCGGAGAAGAGGAGGCAGTATGACAATGCTGGATTTGAGGCTATTGATGCTGAGGGCATGGACATGGAAATTGACTTGTCAAATCTTGGAACTGTCAATACAATGTTTGCAGCTCTATTCAGCAAGTTGGGTGTCCCTATCAAGACTACAATTTCAGCTAATGTGCTTGAAGAAGCTCTAAATGGTACTGTTACAGTTAGACCTCTCCCAATTGGAACATCAGTTAGTGGAAAGGTGGAGAAACAATGTGCCCACTTTTTTGGTGTAACAATCAATGAGCAACAAGCCGAGGCAGGGATTGTAGTAAGAGTTACTTCAACTGCACAAAGTAAATTTAAGTTACTTTATTTTGAGCAAGATGCCAATGCTGGCTATGGTTTGGCCTTACAGGAAGATAGTGAAAAAACGGGCAAAATAACATCTGCAGGAATGTATTTTCTGCATTTTCAAGTATACAGAATGGATTCAACTTTGAATGCGTTGGCTATGGCAAAGGATCCTGAAGCTGCTTTTTTTAAGAGGTTGGAAGGTCTTCAACCCTGTGAGGTCTCAGAACTAAAAGCTGGCACACATATATTCGCTGTTTATGGAGATAATTTTTTTAAGACTGCTACGTATACAATTGAGGCACTTTGTGTGGGGTCATATGAGGATACGACACACAAGCTTAGAGAGATTGAGGCTCAAATATTAAGAAAGAGAAATGAGCTTCGCCAATTTGAGACCGAGTACAGGAAGGCATTGGCACGCTTTCAAGAAGTGACAAATAGATACACCCAGGAAAAGCAATCTGTAGATGAGCTGCTGAAACAACGAGACAGTATTCATTCATCTTTCACTGTCACCAGGACAGCCAACAATGCAGTGGGTAGTAGTGGTGTAAGCAATGGAAGTAGTAGTAGCAAAACTCTTGGCGAAGATTCAAAGGCAGAGAGCCCAATGGAGGATGGAGGCTCAGATGGGAAGGATAAGTCAGCTAAAAAGAAATGGTTCAATCTTAACCTCAAAGGATCGGCATCAGATAAAAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0008092 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

416

Amino Acids

45.96

Weight (kDa)

6.01

Isoelectric Point (pI)

31.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 18 - 80 4.2e-27 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013340)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68370
fragaria_vesca FvH4_4g27000
malus_domestica MD13G1039100.v1.1 MD16G1040000.v1.1
prunus_persica Prupe.1G314100_v2.0.a1 Prupe.1G314100_v2.0.a1 Prupe.1G314100_v2.0.a1
pyrus_communis pycom13g03360
rosa_chinensis RchiOBHm_Chr4g0434801
rosa_laevigata RLG00000006648
rosa_multiflora Rmu_sc0000179.1_g000002
rosa_roxburghii Rroxscaffold_5G00376010
rosa_rugosa Rorug04G0278500
rosa_samantha Rh4AG335000 Rh4BG343500 Rh4CG357900 Rh4DG337400
rosa_wichuraiana Rw4G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 669, 833
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 2 cut(s) 108, 167
AclWI GGATC 3 cut(s) 707, 720, 1234
AcsI RAATTY 1 cut(s) 548
AcuI CTGAAG 1 cut(s) 738
AdeI CACNNNGTG 1 cut(s) 851
AfaI GTAC 2 cut(s) 403, 947
AfiI CCNNNNNNNGG 4 cut(s) 114, 510, 948, 1159
AjnI CCWGG 2 cut(s) 993, 1061
Alw26I GTCTC 4 cut(s) 45, 769, 932, 1026
AlwI GGATC 3 cut(s) 707, 720, 1234
Ama87I CYCGRG 1 cut(s) 7
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 1 cut(s) 597
ApeKI GCWGC 3 cut(s) 326, 722, 1018
ApoI RAATTY 1 cut(s) 548
Asp700I GAANNNNTTC 3 cut(s) 679, 747, 1205
AsuC2I CCSGG 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 1051
AsuII TTCGAA 1 cut(s) 14
AvaI CYCGRG 1 cut(s) 7
BaeGI GKGCMC 1 cut(s) 469
BamHI GGATCC 1 cut(s) 712
BanII GRGCYC 2 cut(s) 8, 1154
BbsI GAAGAC 1 cut(s) 740
BbvCI CCTCAGC 1 cut(s) 267
BbvI GCAGC 3 cut(s) 338, 709, 1005
BccI CCATC 2 cut(s) 1157, 1169
BceAI ACGGC 1 cut(s) 62
BciT130I CCWGG 2 cut(s) 995, 1063
BciVI GTATCC 1 cut(s) 862
BclI TGATCA 1 cut(s) 91
BcnI CCSGG 1 cut(s) 218
BcoDI GTCTC 4 cut(s) 45, 769, 932, 1026
BfaI CTAG 1 cut(s) 78
BfmI CTRYAG 2 cut(s) 639, 1008
BfuI GTATCC 1 cut(s) 862
BglI GCCNNNNNGGC 1 cut(s) 46
BisI GCNGC 4 cut(s) 168, 327, 723, 1019
BlsI GCNGC 4 cut(s) 169, 328, 724, 1020
Bme1390I CCNGG 3 cut(s) 218, 995, 1063
BmeT110I CYCGRG 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 714
BmrFI CCNGG 3 cut(s) 218, 995, 1063
BmsI GCATC 4 cut(s) 213, 253, 565, 1241
BpiI GAAGAC 1 cut(s) 740
Bpu10I CCTNAGC 1 cut(s) 267
Bpu14I TTCGAA 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 218
BsaAI YACGTR 1 cut(s) 831
BsaBI GATNNNNATC 1 cut(s) 1231
BsaI GGTCTC 3 cut(s) 45, 769, 932
BsaJI CCNNGG 2 cut(s) 504, 993
BsaWI WCCGGW 1 cut(s) 160
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 4 cut(s) 114, 510, 948, 1159
Bse1I ACTGG 1 cut(s) 24
Bse3DI GCAATG 1 cut(s) 1108
Bse8I GATNNNNATC 1 cut(s) 1231
BseAI TCCGGA 1 cut(s) 160
BseBI CCWGG 2 cut(s) 995, 1063
BseDI CCNNGG 2 cut(s) 504, 993
BseGI GGATG 2 cut(s) 136, 1168
BseJI GATNNNNATC 1 cut(s) 1231
BseLI CCNNNNNNNGG 4 cut(s) 114, 510, 948, 1159
BseMI GCAATG 1 cut(s) 1108
BseMII CTCAG 3 cut(s) 258, 780, 1185
BseNI ACTGG 1 cut(s) 24
BseRI GAGGAG 1 cut(s) 241
BseSI GKGCMC 1 cut(s) 469
BseXI GCAGC 3 cut(s) 338, 709, 1005
BsgI GTGCAG 1 cut(s) 522
BshFI GGCC 1 cut(s) 599
BsiHKCI CYCGRG 1 cut(s) 7
BsiSI CCGG 2 cut(s) 161, 218
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 4 cut(s) 114, 510, 948, 1159
BsmAI GTCTC 4 cut(s) 45, 769, 932, 1026
BsmFI GGGAC 1 cut(s) 335
BsmI GAATGC 1 cut(s) 697
BsnI GGCC 1 cut(s) 599
Bso31I GGTCTC 3 cut(s) 45, 769, 932
BsoBI CYCGRG 1 cut(s) 7
Bsp119I TTCGAA 1 cut(s) 14
Bsp1286I GDGCHC 3 cut(s) 8, 469, 1154
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 3 cut(s) 91, 712, 1226
BspACI CCGC 2 cut(s) 108, 167
BspANI GGCC 1 cut(s) 599
BspCNI CTCAG 3 cut(s) 259, 779, 1184
BspEI TCCGGA 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 714
BspMAI CTGCAG 1 cut(s) 643
BspPI GGATC 3 cut(s) 707, 720, 1234
BspT104I TTCGAA 1 cut(s) 14
BspTNI GGTCTC 3 cut(s) 45, 769, 932
BsrDI GCAATG 1 cut(s) 1108
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 2 cut(s) 504, 993
BssMI GATC 3 cut(s) 91, 712, 1226
BssNAI GTATAC 2 cut(s) 670, 834
Bst1107I GTATAC 2 cut(s) 670, 834
Bst2UI CCWGG 2 cut(s) 995, 1063
Bst4CI ACNGT 6 cut(s) 177, 310, 406, 412, 1037, 1057
Bst6I CTCTTC 1 cut(s) 218
BstBAI YACGTR 1 cut(s) 831
BstBI TTCGAA 1 cut(s) 14
BstC8I GCNNGC 3 cut(s) 586, 781, 964
BstDEI CTNAG 4 cut(s) 267, 766, 884, 1171
BstF5I GGATG 2 cut(s) 136, 1168
BstKTI GATC 3 cut(s) 94, 715, 1229
BstMAI GTCTC 4 cut(s) 45, 769, 932, 1026
BstMBI GATC 3 cut(s) 91, 712, 1226
BstMWI GCNNNNNNNGC 3 cut(s) 46, 263, 1076
BstNI CCWGG 2 cut(s) 995, 1063
BstSCI CCNGG 3 cut(s) 216, 993, 1061
BstSFI CTRYAG 2 cut(s) 639, 1008
BstSLI GKGCMC 1 cut(s) 469
BstSNI TACGTA 1 cut(s) 831
BstV1I GCAGC 3 cut(s) 338, 709, 1005
BstV2I GAAGAC 1 cut(s) 740
BstX2I RGATCY 1 cut(s) 712
BstXI CCANNNNNNTGG 1 cut(s) 476
BstYI RGATCY 1 cut(s) 712
BstZ17I GTATAC 2 cut(s) 670, 834
BsuI GTATCC 1 cut(s) 862
BsuRI GGCC 1 cut(s) 599
BtsCI GGATG 2 cut(s) 136, 1168
BtsI GCAGTG 1 cut(s) 1086
BtsIMutI CAGTG 2 cut(s) 1053, 1086
Cac8I GCNNGC 3 cut(s) 586, 781, 964
Csp6I GTAC 2 cut(s) 402, 946
CviAII CATG 2 cut(s) 274, 280
CviQI GTAC 2 cut(s) 402, 946
DdeI CTNAG 4 cut(s) 267, 766, 884, 1171
DpnI GATC 3 cut(s) 93, 714, 1228
DpnII GATC 3 cut(s) 91, 712, 1226
DraIII CACNNNGTG 1 cut(s) 851
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Eco105I TACGTA 1 cut(s) 831
Eco24I GRGCYC 2 cut(s) 8, 1154
Eco31I GGTCTC 3 cut(s) 45, 769, 932
Eco57I CTGAAG 1 cut(s) 738
Eco88I CYCGRG 1 cut(s) 7
EcoRII CCWGG 2 cut(s) 993, 1061
EcoT38I GRGCYC 2 cut(s) 8, 1154
FaeI CATG 2 cut(s) 277, 283
FalI AAGNNNNNCTT 2 cut(s) 514, 546
FaqI GGGAC 1 cut(s) 335
FatI CATG 2 cut(s) 273, 279
FauNDI CATATG 1 cut(s) 862
FbaI TGATCA 1 cut(s) 91
FblI GTMKAC 2 cut(s) 669, 833
Fnu4HI GCNGC 4 cut(s) 168, 327, 723, 1019
FokI GGATG 2 cut(s) 123, 1175
FriOI GRGCYC 2 cut(s) 8, 1154
Fsp4HI GCNGC 4 cut(s) 168, 327, 723, 1019
FspBI CTAG 1 cut(s) 78
GluI GCNGC 4 cut(s) 168, 327, 723, 1019
HaeIII GGCC 1 cut(s) 599
HapII CCGG 2 cut(s) 161, 218
Hin1II CATG 2 cut(s) 277, 283
HindIII AAGCTT 2 cut(s) 881, 1244
HinfI GANTC 3 cut(s) 83, 680, 1136
HpaII CCGG 2 cut(s) 161, 218
HphI GGTGA 1 cut(s) 1051
Hpy166II GTNNAC 2 cut(s) 670, 834
Hpy188I TCNGA 6 cut(s) 91, 117, 214, 769, 1174, 1237
Hpy188III TCNNGA 6 cut(s) 95, 140, 161, 358, 716, 971
Hpy8I GTNNAC 2 cut(s) 670, 834
HpyAV CCTTC 4 cut(s) 17, 737, 946, 1174
HpyCH4III ACNGT 6 cut(s) 177, 310, 406, 412, 1037, 1057
HpyCH4IV ACGT 1 cut(s) 830
HpyCH4V TGCA 5 cut(s) 326, 539, 641, 658, 1079
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 263, 1076
HpyF3I CTNAG 4 cut(s) 267, 766, 884, 1171
HpySE526I ACGT 1 cut(s) 830
Hsp92II CATG 2 cut(s) 277, 283
Kpn2I TCCGGA 1 cut(s) 160
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 3 cut(s) 91, 712, 1226
Lsp1109I GCAGC 3 cut(s) 338, 709, 1005
LweI GCATC 4 cut(s) 213, 253, 565, 1241
MaeI CTAG 1 cut(s) 78
MaeII ACGT 1 cut(s) 830
MaeIII GTNAC 6 cut(s) 406, 481, 526, 555, 976, 1057
MalI GATC 3 cut(s) 93, 714, 1228
MboI GATC 3 cut(s) 91, 712, 1226
MboII GAAGA 5 cut(s) 235, 398, 620, 740, 1145
MfeI CAATTG 2 cut(s) 426, 837
MflI RGATCY 1 cut(s) 712
MhlI GDGCHC 3 cut(s) 8, 469, 1154
MluCI AATT 7 cut(s) 285, 366, 426, 548, 811, 837, 932
MmeI TCCRAC 1 cut(s) 720
MroI TCCGGA 1 cut(s) 160
MroXI GAANNNNTTC 3 cut(s) 679, 747, 1205
MseI TTAA 5 cut(s) 552, 732, 819, 908, 1215
MslI CAYNNNNRTG 1 cut(s) 278
MspI CCGG 2 cut(s) 161, 218
MspR9I CCNGG 3 cut(s) 218, 995, 1063
MunI CAATTG 2 cut(s) 426, 837
Mva1269I GAATGC 1 cut(s) 697
MvaI CCWGG 2 cut(s) 995, 1063
MwoI GCNNNNNNNGC 3 cut(s) 46, 263, 1076
NciI CCSGG 1 cut(s) 218
NdeI CATATG 1 cut(s) 862
NdeII GATC 3 cut(s) 91, 712, 1226
NlaIII CATG 2 cut(s) 277, 283
NlaIV GGNNCC 1 cut(s) 714
NmeAIII GCCGAG 1 cut(s) 529
NmuCI GTSAC 2 cut(s) 976, 1057
NspV TTCGAA 1 cut(s) 14
PctI GAATGC 1 cut(s) 697
PdmI GAANNNNTTC 3 cut(s) 679, 747, 1205
PfeI GAWTC 3 cut(s) 83, 680, 1136
PkrI GCNGC 4 cut(s) 169, 328, 724, 1020
Ppu21I YACGTR 1 cut(s) 831
Psp6I CCWGG 2 cut(s) 993, 1061
PspGI CCWGG 2 cut(s) 993, 1061
PspN4I GGNNCC 1 cut(s) 714
PsrI GAACNNNNNNTAC 2 cut(s) 298, 330
PstI CTGCAG 1 cut(s) 643
PsuI RGATCY 1 cut(s) 712
RsaI GTAC 2 cut(s) 403, 947
RsaNI GTAC 2 cut(s) 402, 946
RseI CAYNNNNRTG 1 cut(s) 278
SaqAI TTAA 5 cut(s) 552, 732, 819, 908, 1215
SatI GCNGC 4 cut(s) 168, 327, 723, 1019
Sau3AI GATC 3 cut(s) 91, 712, 1226
ScrFI CCNGG 3 cut(s) 218, 995, 1063
SduI GDGCHC 3 cut(s) 8, 469, 1154
SfaNI GCATC 4 cut(s) 213, 253, 565, 1241
SfcI CTRYAG 2 cut(s) 639, 1008
SfuI TTCGAA 1 cut(s) 14
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
SnaBI TACGTA 1 cut(s) 831
Sse9I AATT 7 cut(s) 285, 366, 426, 548, 811, 837, 932
SsiI CCGC 2 cut(s) 108, 167
SspI AATATT 1 cut(s) 906
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 3 cut(s) 216, 993, 1061
TaaI ACNGT 6 cut(s) 177, 310, 406, 412, 1037, 1057
TaiI ACGT 1 cut(s) 833
TaqI TCGA 1 cut(s) 14
TaqII GACCGA 1 cut(s) 956
TasI AATT 7 cut(s) 285, 366, 426, 548, 811, 837, 932
TatI WGTACW 1 cut(s) 945
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 3 cut(s) 83, 680, 1136
Tru1I TTAA 5 cut(s) 552, 732, 819, 908, 1215
Tru9I TTAA 5 cut(s) 552, 732, 819, 908, 1215
TscAI CASTG 2 cut(s) 1060, 1086
TseFI GTSAC 2 cut(s) 976, 1057
TseI GCWGC 3 cut(s) 326, 722, 1018
Tsp45I GTSAC 2 cut(s) 976, 1057
TspDTI ATGAA 3 cut(s) 75, 1031, 1035
TspRI CASTG 2 cut(s) 1060, 1086
XapI RAATTY 1 cut(s) 548
XcmI CCANNNNNNNNNTGG 1 cut(s) 1078
XmiI GTMKAC 2 cut(s) 669, 833
XmnI GAANNNNTTC 3 cut(s) 679, 747, 1205
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.