MD13G1039100.v1.1

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0013340
Physical Location & Seq
Forward (+)
2639442 .. 2655965
16524 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1039100.v1.1.491

Sequence Viewer

Length: 1290 bp
ATGGGGACGAATTCGAAATTGGAAGGGACGTCTGCGGCGGCGATACGGCGGGACCCCTATGAGGTGCTGAGCGTTTCGAGGGATTCGACTGATCAGGAGATTAAAACCGCTTACAGAAAGCTTGCTCTCAAGTATCATCCAGACAAGAATACCAACAATCCTGAAGCTTCAGAACATTTCAAGGAGGTTGCATTTTCGTATAGCATCTTGTCCGATCCAGAGAAGAGGAGGCAGTACGACAATGCAGGGTTTGAGGCTCTTGATGCTGATGCCATGGACATGGAAATTGACTTGTCAAACCTGGGGACTGTAAATACAATGTTTGCTGCTTTGTTCAGCAAGTTGGGTGTTCCTATCAAGACGACAATTTCCGCCAATGTACTTGAAGAAGCTCTTAATGGCACAGTTACAGTCAGACCTCTCCCGATTGGAACTTCAGTTAGTGGAAAGGTGGAGAAACAGTGTGCTCACTTTTTTGGTGTAACAATCAGTGAGCAACAAGCCGAATCTGGGATTGTAGTTAGAGTTACTTCAACTGCACAAAGCAAATTTAAGTTACTTTATTTTGAGCAAGATGCCAATGGTGGTTATGGTTTAGCCTTACAGGAAGATAGTGAGAAGACAGGCAAAATAACATCTGCAGGGATGTATTTTCTGCATTTTCAAGTATACAGAATGGATTCCACTTTGAATGCGTTGGCTATGGCAAAGGACCCTGAAGCTGCTTTTTTTAAGAGGTTGGAAGGTCTTCAACCCTGTGAGGTCTCACAACTAAAAGCTGGCACTCATATATTCGCTGTTTATGGTCTGAACTTTGATTTGGTCCCTTATTCTTTTGCTTTCTGGGGAGACAATTTTTTTAAGACTGCTACCTATACAATTGAGGCACTTTGTGTAAGGTCTTACGAGGATACGACGGAGAAGCTTAAAGAGATTGAGGCTCAGATTTTGAGAAAGAGAAATGAACTTCGTCAATTTGAGTCAGAGTACAGGAAGGCACTGCAACGCTTTCAAGAAGTGACCAACAGATACACCCAAGAAAAGCAATCTGTAGATGAGCTGCTGAAACAGAGAGACAGTATCCATTCTTCTTTCACCATCACCAAGACAAACAATATTATCGTGGGTGGTGGTAGTGGTATGACTAACGGCAGCACTAGCAAAAATTCTGGCGAGGATTCAAAGGCGGAGAGCCCAATGGAAGACGGAGGCTCTGACGGGAAGGATAAGTCGGGGAAAAAGAAATGGTTCAATCTTAACCTCAAAGGATCAGATAAAAAACTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0008092 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

430

Amino Acids

47.69

Weight (kDa)

6.01

Isoelectric Point (pI)

31.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 18 - 80 2.5e-27 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013340)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68370
fragaria_vesca FvH4_4g27000
malus_domestica MD13G1039100.v1.1 MD16G1040000.v1.1
prunus_persica Prupe.1G314100_v2.0.a1 Prupe.1G314100_v2.0.a1 Prupe.1G314100_v2.0.a1
pyrus_communis pycom13g03360
rosa_chinensis RchiOBHm_Chr4g0434801
rosa_laevigata RLG00000006648
rosa_multiflora Rmu_sc0000179.1_g000002
rosa_roxburghii Rroxscaffold_5G00376010
rosa_rugosa Rorug04G0278500
rosa_samantha Rh4AG335000 Rh4BG343500 Rh4CG357900 Rh4DG337400
rosa_wichuraiana Rw4G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 32
AccI GTMKAC 1 cut(s) 669
AciI CCGC 6 cut(s) 35, 38, 49, 108, 372, 1187
AclWI GGATC 2 cut(s) 209, 1276
AcsI RAATTY 3 cut(s) 10, 548, 1165
AcuI CTGAAG 4 cut(s) 153, 183, 420, 738
AcyI GRCGYC 1 cut(s) 29
AdeI CACNNNGTG 1 cut(s) 893
AfaI GTAC 3 cut(s) 236, 381, 989
AfiI CCNNNNNNNGG 2 cut(s) 61, 510
AgsI TTSAA 9 cut(s) 181, 386, 534, 665, 691, 752, 1013, 1182, 1252
AjnI CCWGG 1 cut(s) 300
AjuI GAANNNNNNNTTGG 3 cut(s) 34, 803, 835
AluBI AGCT 7 cut(s) 121, 167, 392, 722, 779, 925, 1060
AluI AGCT 7 cut(s) 121, 167, 392, 722, 779, 925, 1060
Alw21I GWGCWC 1 cut(s) 469
Alw26I GTCTC 3 cut(s) 769, 843, 1068
AlwI GGATC 2 cut(s) 209, 1276
ApeKI GCWGC 4 cut(s) 326, 722, 1060, 1152
ApoI RAATTY 3 cut(s) 10, 548, 1165
Asp700I GAANNNNTTC 3 cut(s) 679, 747, 1247
AspS9I GGNCC 3 cut(s) 52, 712, 823
AsuHPI GGTGA 2 cut(s) 1087, 1093
AsuII TTCGAA 1 cut(s) 14
AvaII GGWCC 3 cut(s) 52, 712, 823
BanII GRGCYC 1 cut(s) 1196
BarI GAAGNNNNNNTAC 2 cut(s) 1072, 1104
BbsI GAAGAC 3 cut(s) 626, 740, 1209
Bbv12I GWGCWC 1 cut(s) 469
BbvI GCAGC 4 cut(s) 313, 709, 1047, 1164
BccI CCATC 1 cut(s) 1106
BceAI ACGGC 2 cut(s) 62, 1165
BciT130I CCWGG 1 cut(s) 302
BciVI GTATCC 2 cut(s) 904, 1091
BclI TGATCA 1 cut(s) 91
BcoDI GTCTC 3 cut(s) 769, 843, 1068
BfaI CTAG 1 cut(s) 1158
BfmI CTRYAG 2 cut(s) 639, 1050
BfuI GTATCC 2 cut(s) 904, 1091
BisI GCNGC 6 cut(s) 36, 39, 327, 723, 1061, 1153
BlpI GCTNAGC 1 cut(s) 68
BlsI GCNGC 6 cut(s) 37, 40, 328, 724, 1062, 1154
Bme1390I CCNGG 1 cut(s) 302
Bme18I GGWCC 3 cut(s) 52, 712, 823
BmgT120I GGNCC 3 cut(s) 52, 712, 823
BmiI GGNNCC 4 cut(s) 53, 54, 714, 825
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 4 cut(s) 213, 253, 259, 565
BpiI GAAGAC 3 cut(s) 626, 740, 1209
Bpu1102I GCTNAGC 1 cut(s) 68
Bpu14I TTCGAA 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 29
BsaI GGTCTC 1 cut(s) 769
BsaJI CCNNGG 2 cut(s) 273, 301
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 510
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 2 cut(s) 273, 301
BseGI GGATG 2 cut(s) 136, 651
BseLI CCNNNNNNNGG 2 cut(s) 61, 510
BseMII CTCAG 2 cut(s) 59, 956
BseRI GAGGAG 1 cut(s) 241
BseXI GCAGC 4 cut(s) 313, 709, 1047, 1164
BsgI GTGCAG 1 cut(s) 522
BsiHKAI GWGCWC 1 cut(s) 469
BslFI GGGAC 5 cut(s) 19, 40, 65, 319, 809
BslI CCNNNNNNNGG 2 cut(s) 61, 510
BsmAI GTCTC 3 cut(s) 769, 843, 1068
BsmFI GGGAC 5 cut(s) 19, 40, 65, 319, 809
BsmI GAATGC 1 cut(s) 697
Bso31I GGTCTC 1 cut(s) 769
Bsp119I TTCGAA 1 cut(s) 14
Bsp1286I GDGCHC 2 cut(s) 469, 1196
Bsp143I GATC 3 cut(s) 91, 214, 1268
Bsp1720I GCTNAGC 1 cut(s) 68
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 6 cut(s) 35, 38, 49, 108, 372, 1187
BspCNI CTCAG 2 cut(s) 60, 955
BspLI GGNNCC 4 cut(s) 53, 54, 714, 825
BspMAI CTGCAG 1 cut(s) 643
BspPI GGATC 2 cut(s) 209, 1276
BspT104I TTCGAA 1 cut(s) 14
BspTNI GGTCTC 1 cut(s) 769
BssECI CCNNGG 2 cut(s) 273, 301
BssMI GATC 3 cut(s) 91, 214, 1268
BssNAI GTATAC 1 cut(s) 670
BssNI GRCGYC 1 cut(s) 29
BssT1I CCWWGG 1 cut(s) 273
Bst1107I GTATAC 1 cut(s) 670
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 5 cut(s) 310, 406, 412, 462, 1079
Bst6I CTCTTC 1 cut(s) 218
BstACI GRCGYC 1 cut(s) 29
BstBI TTCGAA 1 cut(s) 14
BstC8I GCNNGC 2 cut(s) 123, 781
BstDEI CTNAG 2 cut(s) 68, 942
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 2 cut(s) 136, 651
BstKTI GATC 3 cut(s) 94, 217, 1271
BstMAI GTCTC 3 cut(s) 769, 843, 1068
BstMBI GATC 3 cut(s) 91, 214, 1268
BstMWI GCNNNNNNNGC 2 cut(s) 263, 1158
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstSFI CTRYAG 2 cut(s) 639, 1050
BstV1I GCAGC 4 cut(s) 313, 709, 1047, 1164
BstV2I GAAGAC 3 cut(s) 626, 740, 1209
BstXI CCANNNNNNTGG 1 cut(s) 280
BstZ17I GTATAC 1 cut(s) 670
BsuI GTATCC 2 cut(s) 904, 1091
BtgI CCRYGG 1 cut(s) 273
BtsCI GGATG 2 cut(s) 136, 651
BtsI GCAGTG 1 cut(s) 998
BtsIMutI CAGTG 3 cut(s) 467, 496, 998
Cac8I GCNNGC 2 cut(s) 123, 781
Cfr13I GGNCC 3 cut(s) 52, 712, 823
Csp6I GTAC 3 cut(s) 235, 380, 988
CviAII CATG 2 cut(s) 274, 280
CviQI GTAC 3 cut(s) 235, 380, 988
DdeI CTNAG 2 cut(s) 68, 942
DpnI GATC 3 cut(s) 93, 216, 1270
DpnII GATC 3 cut(s) 91, 214, 1268
DraIII CACNNNGTG 1 cut(s) 893
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
EciI GGCGGA 2 cut(s) 361, 1202
Eco130I CCWWGG 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 1196
Eco31I GGTCTC 1 cut(s) 769
Eco47I GGWCC 3 cut(s) 52, 712, 823
Eco57I CTGAAG 4 cut(s) 153, 183, 420, 738
EcoO109I RGGNCCY 2 cut(s) 52, 712
EcoRI GAATTC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 1196
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 2 cut(s) 277, 283
FalI AAGNNNNNCTT 2 cut(s) 378, 410
FaqI GGGAC 5 cut(s) 19, 40, 65, 319, 809
FatI CATG 2 cut(s) 273, 279
FauI CCCGC 1 cut(s) 42
FbaI TGATCA 1 cut(s) 91
FblI GTMKAC 1 cut(s) 669
Fnu4HI GCNGC 6 cut(s) 36, 39, 327, 723, 1061, 1153
FokI GGATG 2 cut(s) 123, 658
FriOI GRGCYC 1 cut(s) 1196
Fsp4HI GCNGC 6 cut(s) 36, 39, 327, 723, 1061, 1153
FspBI CTAG 1 cut(s) 1158
GluI GCNGC 6 cut(s) 36, 39, 327, 723, 1061, 1153
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 2 cut(s) 277, 283
HindIII AAGCTT 3 cut(s) 119, 165, 923
HinfI GANTC 5 cut(s) 83, 506, 680, 980, 1178
HphI GGTGA 2 cut(s) 1087, 1093
Hpy166II GTNNAC 1 cut(s) 670
Hpy188I TCNGA 8 cut(s) 172, 214, 416, 810, 945, 985, 1216, 1273
Hpy188III TCNNGA 8 cut(s) 95, 140, 161, 218, 260, 358, 424, 1013
Hpy8I GTNNAC 1 cut(s) 670
Hpy99I CGWCG 1 cut(s) 919
HpyAV CCTTC 4 cut(s) 17, 737, 988, 1216
HpyCH4III ACNGT 5 cut(s) 310, 406, 412, 462, 1079
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 6 cut(s) 191, 245, 539, 641, 658, 1003
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 1158
HpyF3I CTNAG 2 cut(s) 68, 942
HpySE526I ACGT 1 cut(s) 29
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 2 cut(s) 277, 283
KflI GGGWCCC 1 cut(s) 52
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 3 cut(s) 91, 214, 1268
Lsp1109I GCAGC 4 cut(s) 313, 709, 1047, 1164
LweI GCATC 4 cut(s) 213, 253, 259, 565
MaeI CTAG 1 cut(s) 1158
MaeII ACGT 1 cut(s) 29
MaeIII GTNAC 5 cut(s) 406, 481, 526, 555, 1018
MalI GATC 3 cut(s) 93, 216, 1270
MboI GATC 3 cut(s) 91, 214, 1268
MboII GAAGA 7 cut(s) 235, 398, 620, 631, 740, 1080, 1214
MfeI CAATTG 1 cut(s) 879
MhlI GDGCHC 2 cut(s) 469, 1196
MluCI AATT 9 cut(s) 10, 17, 285, 366, 548, 853, 879, 974, 1165
MlyI GAGTC 1 cut(s) 989
MmeI TCCRAC 1 cut(s) 720
MroXI GAANNNNTTC 3 cut(s) 679, 747, 1247
MseI TTAA 7 cut(s) 102, 396, 552, 732, 861, 927, 1257
MslI CAYNNNNRTG 1 cut(s) 278
MspR9I CCNGG 1 cut(s) 302
MunI CAATTG 1 cut(s) 879
Mva1269I GAATGC 1 cut(s) 697
MvaI CCWGG 1 cut(s) 302
MwoI GCNNNNNNNGC 2 cut(s) 263, 1158
NcoI CCATGG 1 cut(s) 273
NdeII GATC 3 cut(s) 91, 214, 1268
NlaIII CATG 2 cut(s) 277, 283
NlaIV GGNNCC 4 cut(s) 53, 54, 714, 825
NmuCI GTSAC 1 cut(s) 1018
NspV TTCGAA 1 cut(s) 14
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PctI GAATGC 1 cut(s) 697
PdmI GAANNNNTTC 3 cut(s) 679, 747, 1247
PfeI GAWTC 4 cut(s) 83, 506, 680, 1178
PkrI GCNGC 6 cut(s) 37, 40, 328, 724, 1062, 1154
PleI GAGTC 1 cut(s) 988
PpsI GAGTC 1 cut(s) 988
PpuMI RGGWCCY 2 cut(s) 52, 712
Psp5II RGGWCCY 2 cut(s) 52, 712
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 4 cut(s) 53, 54, 714, 825
PspPI GGNCC 3 cut(s) 52, 712, 823
PspPPI RGGWCCY 2 cut(s) 52, 712
PstI CTGCAG 1 cut(s) 643
RsaI GTAC 3 cut(s) 236, 381, 989
RsaNI GTAC 3 cut(s) 235, 380, 988
RseI CAYNNNNRTG 1 cut(s) 278
SaqAI TTAA 7 cut(s) 102, 396, 552, 732, 861, 927, 1257
SatI GCNGC 6 cut(s) 36, 39, 327, 723, 1061, 1153
Sau3AI GATC 3 cut(s) 91, 214, 1268
Sau96I GGNCC 3 cut(s) 52, 712, 823
SchI GAGTC 1 cut(s) 989
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 2 cut(s) 469, 1196
SfaNI GCATC 4 cut(s) 213, 253, 259, 565
SfcI CTRYAG 2 cut(s) 639, 1050
SfuI TTCGAA 1 cut(s) 14
SinI GGWCC 3 cut(s) 52, 712, 823
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 9 cut(s) 10, 17, 285, 366, 548, 853, 879, 974, 1165
SsiI CCGC 6 cut(s) 35, 38, 49, 108, 372, 1187
SspI AATATT 1 cut(s) 1117
SspMI CTAG 1 cut(s) 1158
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 5 cut(s) 310, 406, 412, 462, 1079
TaiI ACGT 1 cut(s) 32
TaqI TCGA 3 cut(s) 14, 77, 86
TasI AATT 9 cut(s) 10, 17, 285, 366, 548, 853, 879, 974, 1165
TatI WGTACW 2 cut(s) 379, 987
TauI GCSGC 2 cut(s) 38, 41
TfiI GAWTC 4 cut(s) 83, 506, 680, 1178
Tru1I TTAA 7 cut(s) 102, 396, 552, 732, 861, 927, 1257
Tru9I TTAA 7 cut(s) 102, 396, 552, 732, 861, 927, 1257
TscAI CASTG 3 cut(s) 467, 496, 1005
TseFI GTSAC 1 cut(s) 1018
TseI GCWGC 4 cut(s) 326, 722, 1060, 1152
Tsp45I GTSAC 1 cut(s) 1018
TspDTI ATGAA 1 cut(s) 978
TspGWI ACGGA 2 cut(s) 932, 1221
TspRI CASTG 3 cut(s) 467, 496, 1005
VpaK11BI GGWCC 3 cut(s) 52, 712, 823
XapI RAATTY 3 cut(s) 10, 548, 1165
XmiI GTMKAC 1 cut(s) 669
XmnI GAANNNNTTC 3 cut(s) 679, 747, 1247
XspI CTAG 1 cut(s) 1158
ZraI GACGTC 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.