FvH4_4g27060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016536
Physical Location & Seq
Reverse (-)
28211490 .. 28212862
1373 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g27060.t1

Sequence Viewer

Length: 783 bp
ATGAAAGTGTACTGCTTTCAACTATGGGCATTGAGGTGTGCTCGGAGATTTCCAGCCCCGGATTTAGTCCAAGGATTTCGTTTTCTCATGATCTCGACAAGGCAAACGCAACGGTGCCAAAAGAAGAGCAGCAACTACAACGCCGACGAGCTTTTCTCTAATGGCAAGATTCTTCCTGTGCAAATCAAGCCAAATCCCAACACCAACACCACCAACAGCAAAGAAACCCTTCTTCATCCTCCTCAATCCGCAACAAAGAACACAGAGAAAAAGAGACTGAAGGAGTTCTTAGACGACAGCAATGCCGAAGATGAAGCTACTGAAAACGAAGAGAAGCCTCCGATTGCAAAGCCTTCTTGGCAGTTCAGGAGAAGCAGCAGCCTCAATTTGGATAGTACTACTACTGCGCGAGGCATGAACTTAATCCGATCACTGCATTTTCTTTCGAGAAGCAACTCAACCGGATCAGCTCCAAATCCAAAACAAACAGTTACCCCAAATCAGAAGCAGCAGCCTTTGAGGAAAAACCAATCTACCAATTCAAGGAGAAGATCATCCTCAGCATCATCATCATCATGTTCAAGTAGCACTACTTATTATCCTTACAACACTTCTCCGCGGTCACACAAGCCTTCATTAAGGAGGAGTGGATCTTACGGCAATGGGGTAAGAATCAGTCCAGTCCTGAATCTCCCACCGCCTTACATTTCGAAAGTTACCGTGAGTTTTTTCGGGTTCGGATCTCTCTTCTGTAATGGTAAGTTAAAAAAGAAGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

261

Amino Acids

29.29

Weight (kDa)

10.42

Isoelectric Point (pI)

60.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 48 - 192 9.7e-06 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68330
fragaria_vesca FvH4_4g27060
malus_domestica MD13G1039600.v1.1 MD16G1040500.v1.1
prunus_persica Prupe.1G313600_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0434861
rosa_laevigata RLG00000006640
rosa_multiflora Rmu_sc0003726.1_g000002
rosa_roxburghii Rroxscaffold_5G00376070
rosa_rugosa Rorug04G0279700
rosa_samantha Rh4AG335500 Rh4BG344000 Rh4DG338000
rosa_wichuraiana Rw4G029270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 114
AccII CGCG 2 cut(s) 409, 619
AciI CCGC 4 cut(s) 249, 617, 619, 698
AclWI GGATC 3 cut(s) 472, 658, 748
AcuI CTGAAG 1 cut(s) 299
AfaI GTAC 2 cut(s) 11, 397
AfiI CCNNNNNNNGG 2 cut(s) 388, 543
AgsI TTSAA 3 cut(s) 20, 543, 582
AluBI AGCT 3 cut(s) 151, 317, 470
AluI AGCT 3 cut(s) 151, 317, 470
Alw21I GWGCWC 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 268
AlwI GGATC 3 cut(s) 472, 658, 748
ApeKI GCWGC 5 cut(s) 129, 375, 378, 508, 511
Asp700I GAANNNNTTC 2 cut(s) 228, 284
AspLEI GCGC 1 cut(s) 409
AsuC2I CCSGG 1 cut(s) 59
AsuII TTCGAA 1 cut(s) 710
BanI GGYRCC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 43
BbvCI CCTCAGC 1 cut(s) 559
BbvI GCAGC 5 cut(s) 141, 387, 390, 520, 523
BceAI ACGGC 1 cut(s) 673
BcgI CGANNNNNNTGC 2 cut(s) 284, 318
BcnI CCSGG 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 268
BglI GCCNNNNNGGC 1 cut(s) 358
BisI GCNGC 5 cut(s) 130, 376, 379, 509, 512
BlsI GCNGC 5 cut(s) 131, 377, 380, 510, 513
BmcAI AGTACT 1 cut(s) 397
Bme1390I CCNGG 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 116
BmrFI CCNGG 1 cut(s) 59
BmsI GCATC 1 cut(s) 572
BplI GAGNNNNNCTC 4 cut(s) 25, 57, 140, 172
Bpu10I CCTNAGC 1 cut(s) 559
Bpu14I TTCGAA 1 cut(s) 710
BpuMI CCSGG 1 cut(s) 59
BsaJI CCNNGG 3 cut(s) 57, 70, 617
BsaWI WCCGGW 1 cut(s) 461
Bsc4I CCNNNNNNNGG 2 cut(s) 388, 543
Bse1I ACTGG 1 cut(s) 680
Bse3DI GCAATG 2 cut(s) 307, 667
BseDI CCNNGG 3 cut(s) 57, 70, 617
BseGI GGATG 2 cut(s) 235, 554
BseLI CCNNNNNNNGG 2 cut(s) 388, 543
BseMI GCAATG 2 cut(s) 307, 667
BseMII CTCAG 1 cut(s) 573
BseNI ACTGG 1 cut(s) 680
BseRI GAGGAG 2 cut(s) 231, 658
BseXI GCAGC 5 cut(s) 141, 387, 390, 520, 523
Bsh1236I CGCG 2 cut(s) 409, 619
BshNI GGYRCC 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 43
BsiSI CCGG 2 cut(s) 59, 462
BslI CCNNNNNNNGG 2 cut(s) 388, 543
BsmAI GTCTC 1 cut(s) 268
Bsp119I TTCGAA 1 cut(s) 710
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 6 cut(s) 90, 428, 464, 551, 650, 740
BspACI CCGC 4 cut(s) 249, 617, 619, 698
BspCNI CTCAG 1 cut(s) 572
BspFNI CGCG 2 cut(s) 409, 619
BspHI TCATGA 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 116
BspPI GGATC 3 cut(s) 472, 658, 748
BspQI GCTCTTC 1 cut(s) 119
BspT104I TTCGAA 1 cut(s) 710
BspT107I GGYRCC 1 cut(s) 114
BsrDI GCAATG 2 cut(s) 307, 667
BsrI ACTGG 1 cut(s) 680
BssECI CCNNGG 3 cut(s) 57, 70, 617
BssMI GATC 6 cut(s) 90, 428, 464, 551, 650, 740
BssT1I CCWWGG 1 cut(s) 70
Bst4CI ACNGT 3 cut(s) 114, 490, 721
Bst6I CTCTTC 3 cut(s) 119, 324, 752
BstBI TTCGAA 1 cut(s) 710
BstDEI CTNAG 2 cut(s) 289, 559
BstDSI CCRYGG 1 cut(s) 617
BstF5I GGATG 2 cut(s) 235, 554
BstFNI CGCG 2 cut(s) 409, 619
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 6 cut(s) 93, 431, 467, 554, 653, 743
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 6 cut(s) 90, 428, 464, 551, 650, 740
BstMWI GCNNNNNNNGC 2 cut(s) 187, 358
BstSCI CCNGG 1 cut(s) 57
BstUI CGCG 2 cut(s) 409, 619
BstV1I GCAGC 5 cut(s) 141, 387, 390, 520, 523
BstX2I RGATCY 2 cut(s) 650, 740
BstYI RGATCY 2 cut(s) 650, 740
BtgI CCRYGG 1 cut(s) 617
BtsCI GGATG 2 cut(s) 235, 554
BtsI GCAGTG 1 cut(s) 431
BtsIMutI CAGTG 1 cut(s) 431
CciI TCATGA 1 cut(s) 87
CfoI GCGC 1 cut(s) 409
Cfr42I CCGCGG 1 cut(s) 620
Csp6I GTAC 2 cut(s) 10, 396
CviAII CATG 3 cut(s) 88, 415, 576
CviQI GTAC 2 cut(s) 10, 396
DdeI CTNAG 2 cut(s) 289, 559
DpnI GATC 6 cut(s) 92, 430, 466, 553, 652, 742
DpnII GATC 6 cut(s) 90, 428, 464, 551, 650, 740
Eam1104I CTCTTC 3 cut(s) 119, 324, 752
EarI CTCTTC 3 cut(s) 119, 324, 752
Eco130I CCWWGG 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 3 cut(s) 91, 418, 579
FaiI YATR 4 cut(s) 25, 89, 416, 577
FalI AAGNNNNNCTT 4 cut(s) 213, 245, 272, 304
FatI CATG 3 cut(s) 87, 414, 575
Fnu4HI GCNGC 5 cut(s) 130, 376, 379, 509, 512
FokI GGATG 2 cut(s) 222, 541
Fsp4HI GCNGC 5 cut(s) 130, 376, 379, 509, 512
GlaI GCGC 1 cut(s) 408
GluI GCNGC 5 cut(s) 130, 376, 379, 509, 512
HapII CCGG 2 cut(s) 59, 462
HhaI GCGC 1 cut(s) 409
Hin1II CATG 3 cut(s) 91, 418, 579
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HinfI GANTC 3 cut(s) 169, 672, 688
HpaII CCGG 2 cut(s) 59, 462
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 5 cut(s) 45, 342, 428, 504, 740
Hpy188III TCNNGA 5 cut(s) 88, 94, 367, 447, 685
Hpy8I GTNNAC 1 cut(s) 10
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 4 cut(s) 239, 274, 363, 642
HpyCH4III ACNGT 3 cut(s) 114, 490, 721
HpyCH4V TGCA 3 cut(s) 181, 347, 436
HpyF10VI GCNNNNNNNGC 2 cut(s) 187, 358
HpyF3I CTNAG 2 cut(s) 289, 559
Hsp92II CATG 3 cut(s) 91, 418, 579
HspAI GCGC 1 cut(s) 407
KspI CCGCGG 1 cut(s) 620
Kzo9I GATC 6 cut(s) 90, 428, 464, 551, 650, 740
LguI GCTCTTC 1 cut(s) 119
LmnI GCTCC 1 cut(s) 475
LpnPI CCDG 7 cut(s) 66, 72, 189, 352, 475, 693, 698
Lsp1109I GCAGC 5 cut(s) 141, 387, 390, 520, 523
LweI GCATC 1 cut(s) 572
MaeIII GTNAC 3 cut(s) 490, 621, 715
MalI GATC 6 cut(s) 92, 430, 466, 553, 652, 742
MboI GATC 6 cut(s) 90, 428, 464, 551, 650, 740
MboII GAAGA 7 cut(s) 136, 164, 224, 320, 341, 561, 739
MflI RGATCY 2 cut(s) 650, 740
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 2 cut(s) 385, 538
MnlI CCTC 9 cut(s) 27, 249, 252, 348, 392, 404, 513, 568, 636
MroXI GAANNNNTTC 2 cut(s) 228, 284
MseI TTAA 3 cut(s) 422, 638, 764
MslI CAYNNNNRTG 2 cut(s) 34, 574
MspA1I CMGCKG 1 cut(s) 619
MspI CCGG 2 cut(s) 59, 462
MspR9I CCNGG 1 cut(s) 59
MvnI CGCG 2 cut(s) 409, 619
MwoI GCNNNNNNNGC 2 cut(s) 187, 358
NciI CCSGG 1 cut(s) 59
NdeII GATC 6 cut(s) 90, 428, 464, 551, 650, 740
NlaIII CATG 3 cut(s) 91, 418, 579
NlaIV GGNNCC 1 cut(s) 116
NmuCI GTSAC 1 cut(s) 621
NspV TTCGAA 1 cut(s) 710
PagI TCATGA 1 cut(s) 87
PciSI GCTCTTC 1 cut(s) 119
PdmI GAANNNNTTC 2 cut(s) 228, 284
PfeI GAWTC 3 cut(s) 169, 672, 688
PkrI GCNGC 5 cut(s) 131, 377, 380, 510, 513
PspN4I GGNNCC 1 cut(s) 116
PsuI RGATCY 2 cut(s) 650, 740
RsaI GTAC 2 cut(s) 11, 397
RsaNI GTAC 2 cut(s) 10, 396
RseI CAYNNNNRTG 2 cut(s) 34, 574
SacII CCGCGG 1 cut(s) 620
SapI GCTCTTC 1 cut(s) 119
SaqAI TTAA 3 cut(s) 422, 638, 764
SatI GCNGC 5 cut(s) 130, 376, 379, 509, 512
Sau3AI GATC 6 cut(s) 90, 428, 464, 551, 650, 740
ScaI AGTACT 1 cut(s) 397
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 1 cut(s) 43
SetI ASST 4 cut(s) 38, 153, 319, 472
SfaNI GCATC 1 cut(s) 572
Sfr303I CCGCGG 1 cut(s) 620
SfuI TTCGAA 1 cut(s) 710
SgrBI CCGCGG 1 cut(s) 620
SmiMI CAYNNNNRTG 2 cut(s) 34, 574
Sse9I AATT 2 cut(s) 385, 538
SsiI CCGC 4 cut(s) 249, 617, 619, 698
StyD4I CCNGG 1 cut(s) 57
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 3 cut(s) 114, 490, 721
TaqI TCGA 3 cut(s) 95, 446, 710
TasI AATT 2 cut(s) 385, 538
TatI WGTACW 2 cut(s) 9, 395
TfiI GAWTC 3 cut(s) 169, 672, 688
Tru1I TTAA 3 cut(s) 422, 638, 764
Tru9I TTAA 3 cut(s) 422, 638, 764
TscAI CASTG 1 cut(s) 438
TseFI GTSAC 1 cut(s) 621
TseI GCWGC 5 cut(s) 129, 375, 378, 508, 511
Tsp45I GTSAC 1 cut(s) 621
TspDTI ATGAA 5 cut(s) 17, 224, 327, 431, 624
TspRI CASTG 1 cut(s) 438
XmnI GAANNNNTTC 2 cut(s) 228, 284
ZrmI AGTACT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.